CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184152

Assay name 35S:ATR1_like_miR_rep2

GSE experiment GSE7570: ATR1_like_Clade_OE_and_miR

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
191.0 100.0 132.2 At5g59330 836052 lipid binding F:lipid binding;P:lipid transport;C:endomembrane system O.I. C.G. H.G.
79.5 99.9 49.3 At1g80080 844348 TMM (TOO MANY MOUTHS) Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development. O.I. C.G. H.G.
64.3 99.8 43.7 At2g14580 815945 ATPRB1 pathogenesis related protein, encodes a basic PR1-like protein. Expresses in flowers, roots, and not in leaves and responses to ethylene and methyl jasmonate. Salicylic acid represses gene expression. O.I. C.G. H.G.
58.6 99.8 26.9 At5g53210 835402 SPCH (SPEECHLESS) Encodes a basic helix-loop-helix (bHLH) transcription factor that is necessary and sufficient for the asymmetric divisions that establish the stomatal lineage in Arabidopsis thaliana. Expression of SPCH in young epidermal cells allows these cells to make asymmetric divisions. SPCH is a substrate of a kinase MPK3 and MPK6. O.I. C.G. H.G.
44.5 99.8 18.0 At4g31805 829309 WRKY family transcription factor F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:unknown;PMOB O.I. C.G. H.G.
33.4 99.7 16.2 At5g60780 836199 ATNRT2.3 member of High affinity nitrate transporter family O.I. C.G. H.G.
31.8 99.7 24.8 At1g34245 840324 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
28.3 99.7 16.6 At5g60880 836209 unknown protein F:unknown;P:unknown;C:cellular_component unknown;OPMF O.I. C.G. H.G.
27.4 99.7 39.9 At4g30720 829195 electron carrier/ oxidoreductase F:electron carrier activity, oxidoreductase activity;P:unknown;C:chloroplast;BOAPF O.I. C.G. H.G.
26.8 99.7 20.4 At1g72670 843599 iqd8 (IQ-domain 8) F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
22.2 99.6 32.3 At1g69160 843247 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMV O.I. C.G. H.G.
20.8 99.6 44.4 At4g14770 827132 TCX2 (TESMIN/TSO1-LIKE CXC 2) F:transcription factor activity;P:regulation of transcription;C:chloroplast;OMPFB O.I. C.G. H.G.
20.7 99.6 91.2 At1g02730 839467 ATCSLD5 Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems. O.I. C.G. H.G.
19.4 99.6 9.3 At4g03270 828000 CYCD6 F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:nucleus;MPOFV O.I. C.G. H.G.
19.2 99.6 45.4 At3g03710 821181 RIF10 (resistant to inhibition with FSM 10) Mutants impaired in the expression of this gene have been selected through their resistance to fosmidomycin, a strong inhibitor of DXR, an enzyme of the methylerythritol-dependent IPP biosynthesis pathway. The pathway enzymes were upregulated in the mutant seedlings. O.I. C.G. H.G.
18.5 99.5 48.0 At5g15360 831388 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
16.5 99.5 60.4 At1g12860 837843 SCRM2 (SCREAM 2) Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation. O.I. C.G. H.G.
15.6 99.5 46.8 At5g10690 830933 pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POMFBA O.I. C.G. H.G.
15.6 99.5 26.4 At1g06100 837119 fatty acid desaturase family protein F:oxidoreductase activity;P:lipid metabolic process;C:unknown;BOMFPV O.I. C.G. H.G.
15.4 99.5 27.2 At5g57590 835863 BIO1 (biotin auxotroph 1) Mutant complemented by E coli Bio A gene encoding 7,8-diaminopelargonic acid aminotransferase. O.I. C.G. H.G.
15.0 99.4 116.5 At5g47500 834800 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM O.I. C.G. H.G.
15.0 99.4 12.6 At4g21270 827876 ATK1 (ARABIDOPSIS THALIANA KINESIN 1) Encodes a kinesin-like motor protein heavy chain. Loss of function mutations have reduced fertility and are defective in spindle formation in male meiosis. O.I. C.G. H.G.
14.3 99.4 42.4 At3g49260 824087 iqd21 (IQ-domain 21) F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOFB O.I. C.G. H.G.
14.1 99.4 40.4 At3g17680 821035 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF O.I. C.G. H.G.
14.0 99.4 19.8 At1g76310 843964 CYCB2 core cell cycle genes O.I. C.G. H.G.
13.9 99.4 46.0 At1g60590 842353 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBMOVA O.I. C.G. H.G.
13.6 99.4 22.4 At4g00480 827965 myc-related transcription factor (MYC1) MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminus O.I. C.G. H.G.
13.2 99.4 60.4 At3g04260 819581 PTAC3 (PLASTID TRANSCRIPTIONALLY ACTIVE3) F:DNA binding, nucleic acid binding;P:unknown;C:plastid chromosome, nucleus, chloroplast, nucleoid, membrane;MOPFBVA O.I. C.G. H.G.
12.9 99.3 36.9 At5g18570 831975 GTP1/OBG family protein F:GTP binding, nucleotide binding;P:unknown;C:intracellular, chloroplast;BOMFAPV O.I. C.G. H.G.
12.8 99.3 39.8 At4g34250 829574 KCS16 (3-KETOACYL-COA SYNTHASE 16) Encodes KCS16, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
12.5 99.3 206.9 At5g48490 834905 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
12.0 99.3 26.8 At1g11600 837704 CYP77B1 member of CYP77B O.I. C.G. H.G.
12.0 99.3 20.3 At5g60930 836214 chromosome-associated kinesin, putative F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFBPAV O.I. C.G. H.G.
11.9 99.3 57.6 At1g15290 838097 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MBOFPAV O.I. C.G. H.G.
11.8 99.3 94.0 At3g14110 820628 FLU (FLUORESCENT IN BLUE LIGHT) Encodes a novel coiled-coil, TPR domain containing protein that is localized to the chloroplast membrane and is involved in chlorophyll biosynthesis. Mutants accumulate protochlorophyllide, an intermediate in the chlorophyll biosynthesis pathway, in dark and release singlet oxygen in plastids in a controlled and non-invasive manner upon a dark/light shift. O.I. C.G. H.G.
11.8 99.3 33.4 At4g33000 829437 CBL10 (CALCINEURIN B-LIKE 10) Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis. O.I. C.G. H.G.
11.7 99.3 22.0 At1g03780 839140 targeting protein-related Homolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting, one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase. O.I. C.G. H.G.
11.6 99.3 18.7 At5g51910 835266 TCP family transcription factor, putative F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
11.5 99.3 34.6 At2g30695 817620 - F:molecular_function unknown;P:protein folding, protein transport;C:chloroplast stroma, chloroplast;BOP O.I. C.G. H.G.
11.4 99.3 12.5 At3g20150 821558 kinesin motor family protein F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOFPBAV O.I. C.G. H.G.
11.3 99.3 21.9 At4g19240 827664 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
11.3 99.3 18.5 At3g57830 824952 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
11.2 99.2 17.2 At5g55580 835652 mitochondrial transcription termination factor family protein / mTERF family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOFVB O.I. C.G. H.G.
10.8 99.2 48.2 At1g30520 839932 AAE14 (Acyl-Activating Enzyme 14) Encodes a chloroplast O-succinylbenzoyl-CoA ligase. Involved in phylloquinone biosynthesis. Knock mutant is seedling lethal. O.I. C.G. H.G.
10.7 99.2 56.9 At1g14410 838003 WHY1 (WHIRLY 1) Encodes a homolog of the potato p24 protein. Binds single strand telomeric repeats. Negatively regulates telomerase activity and telomere length. O.I. C.G. H.G.
10.7 99.2 50.5 At3g01550 821114 PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2) F:antiporter activity, triose-phosphate transmembrane transporter activity;P:triose phosphate transport, transport;C:integral to membrane, chloroplast, membrane;PMFOBA O.I. C.G. H.G.
10.6 99.2 44.1 At4g39510 830105 CYP96A12 member of CYP96A O.I. C.G. H.G.
10.6 99.2 20.3 At5g46740 834717 UBP21 (UBIQUITIN-SPECIFIC PROTEASE 21) Encodes a ubiquitin-specific protease. O.I. C.G. H.G.
10.6 99.2 17.1 At4g01730 826911 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:unknown;MOFP O.I. C.G. H.G.
10.5 99.2 82.8 At3g26744 822287 ICE1 (INDUCER OF CBF EXPRESSION 1) Encodes a MYC-like bHLH transcriptional activator that binds specifically to the MYC recognition sequences in the CBF3 promoter. Mutants are defective in cold-regulated gene expression. Cold stress triggers protein degradation of nuclear GFPICE1 protein, and the RING finger protein HOS1 is required. Sumoylation of ICE1 controls CBF3/DREB1A expression and freezing tolerance. O.I. C.G. H.G.
10.5 99.2 30.1 At3g13180 820508 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein F:RNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;BOMFAP O.I. C.G. H.G.
10.5 99.2 14.4 At4g14200 827060 unknown protein F:unknown;P:biological_process unknown;C:unknown;MBOFPA O.I. C.G. H.G.
10.4 99.2 100.5 At5g03940 830273 CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) mutant has Yellow first leaves; Chloroplast Signal Recognition Particle Subunit O.I. C.G. H.G.
10.4 99.2 28.3 At2g40960 818696 nucleic acid binding F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
10.3 99.2 203.4 At5g58250 835937 unknown protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast;OBP O.I. C.G. H.G.
10.3 99.2 11.2 At4g34650 829617 SQS2 (SQUALENE SYNTHASE 2) Encodes a protein with similarity to squalene synthase which catalyzes the first committed step in sterol biosynthesis. To date no experimental evidence exists that SQS2 functions as a squalene synthase and some experiments indicate it does not have this function. O.I. C.G. H.G.
10.2 99.2 138.8 At1g01060 839341 LHY (LATE ELONGATED HYPOCOTYL) LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 O.I. C.G. H.G.
10.1 99.2 99.8 At1g06950 837205 TIC110 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110) Encodes a protein thought to be a part of the translocon at the chloroplast inner envelope. Involved in protein import into the chloroplast and chloroplast biogenesis. O.I. C.G. H.G.
9.9 99.1 59.6 At2g23000 816831 scpl10 (serine carboxypeptidase-like 10) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
9.7 99.1 291.7 At2g42840 818884 PDF1 (PROTODERMAL FACTOR 1) Encodes a putative extracellular proline-rich protein is exclusively expressed in the L1 layer of vegetative, inflorescence and floral meristems and the protoderm of organ primordia. O.I. C.G. H.G.
9.7 99.1 43.1 At1g69200 843251 kinase F:kinase activity;P:acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:nucleoid;BOPAMF O.I. C.G. H.G.
9.7 99.1 14.4 At5g46880 834733 HB-7 (HOMEOBOX-7) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MPFOB O.I. C.G. H.G.
9.6 99.1 23.4 At1g05230 839256 HDG2 (HOMEODOMAIN GLABROUS 2) Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. O.I. C.G. H.G.
9.5 99.1 83.8 At1g08560 837378 SYP111 (SYNTAXIN OF PLANTS 111) member of SYP11 Gene Family O.I. C.G. H.G.
9.4 99.1 106.4 At5g64940 836618 ATATH13 Encodes a member of ATH subfamily of ATP-binding cassette (ABC) proteins. O.I. C.G. H.G.
9.4 99.1 49.4 At3g10690 820238 DNA gyrase subunit A family protein F:DNA topoisomerase activity, DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, catalytic activity, ATP binding;P:DNA topological change, DNA metabolic process;C:mitochondrion, chloroplast, nucleoid;OBMFVPA O.I. C.G. H.G.
9.3 99.1 42.0 At2g34640 818029 PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12) Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression. O.I. C.G. H.G.
9.3 99.1 6.4 At3g15550 820794 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
9.2 99.1 72.6 At3g56370 824804 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
9.2 99.1 35.9 At5g57180 835824 CIA2 (CHLOROPLAST IMPORT APPARATUS 2) Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast. O.I. C.G. H.G.
9.2 99.1 27.0 At3g16260 820872 TRZ4 (TRNASE Z 4) Encodes a tRNase Z. O.I. C.G. H.G.
9.2 99.1 14.7 At1g15570 838127 CYCA2 A2-type cyclin. Negatively regulates endocycles and acts as a key regulator of ploidy levels in Arabidopsis endoreduplication. Interacts physically with CDKA;1. Expressed preferentially in trichomes and young developing tissues. O.I. C.G. H.G.
9.1 99.1 17.5 At5g07180 830609 ERL2 (ERECTA-LIKE 2) Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments. O.I. C.G. H.G.
8.9 99.0 46.5 At4g26370 828743 antitermination NusB domain-containing protein F:RNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;BOP O.I. C.G. H.G.
8.9 99.0 31.4 At5g05670 830451 signal recognition particle binding F:signal recognition particle binding;P:unknown;C:endoplasmic reticulum, plasma membrane;MOFPBA O.I. C.G. H.G.
8.9 99.0 25.1 At3g13490 820551 OVA5 (OVULE ABORTION 5) Encodes a dual targeted lysyl-tRNA ligase that is found both in the mitochondrion and the chloroplast. Plants mutated in this gene exhibit an ovule abortion phenotype. O.I. C.G. H.G.
8.8 99.0 96.8 At1g47530 841162 ripening-responsive protein, putative F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport, ripening;C:plasma membrane, membrane;BOPFMA O.I. C.G. H.G.
8.8 99.0 30.2 At3g49140 824075 - F:unknown;P:unknown;C:unknown;PBMOFVA O.I. C.G. H.G.
8.7 99.0 45.2 At3g62910 825466 APG3 (ALBINO AND PALE GREEN) Isolated in a screen for chloroplast development mutants. Pale green, albino seedlings arrest early in seedling development. O.I. C.G. H.G.
8.7 99.0 33.2 At4g34220 829571 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
191.0	100.0	132.2	At5g59330	836052	lipid binding	F:lipid binding;P:lipid transport;C:endomembrane system	O.I.	C.G.	H.G.
79.5	99.9	49.3	At1g80080	844348	TMM (TOO MANY MOUTHS)	Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development.	O.I.	C.G.	H.G.
64.3	99.8	43.7	At2g14580	815945	ATPRB1	pathogenesis related protein, encodes a basic PR1-like protein. Expresses in flowers, roots, and not in leaves and responses to ethylene and methyl jasmonate. Salicylic acid represses gene expression.	O.I.	C.G.	H.G.
58.6	99.8	26.9	At5g53210	835402	SPCH (SPEECHLESS)	Encodes a basic helix-loop-helix (bHLH) transcription factor that is necessary and sufficient for the asymmetric divisions that establish the stomatal lineage in Arabidopsis thaliana. Expression of SPCH in young epidermal cells allows these cells to make asymmetric divisions. SPCH is a substrate of a kinase MPK3 and MPK6.	O.I.	C.G.	H.G.
44.5	99.8	18.0	At4g31805	829309	WRKY family transcription factor	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:unknown;PMOB	O.I.	C.G.	H.G.
33.4	99.7	16.2	At5g60780	836199	ATNRT2.3	member of High affinity nitrate transporter family	O.I.	C.G.	H.G.
31.8	99.7	24.8	At1g34245	840324	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
28.3	99.7	16.6	At5g60880	836209	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;OPMF	O.I.	C.G.	H.G.
27.4	99.7	39.9	At4g30720	829195	electron carrier/ oxidoreductase	F:electron carrier activity, oxidoreductase activity;P:unknown;C:chloroplast;BOAPF	O.I.	C.G.	H.G.
26.8	99.7	20.4	At1g72670	843599	iqd8 (IQ-domain 8)	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
22.2	99.6	32.3	At1g69160	843247	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMV	O.I.	C.G.	H.G.
20.8	99.6	44.4	At4g14770	827132	TCX2 (TESMIN/TSO1-LIKE CXC 2)	F:transcription factor activity;P:regulation of transcription;C:chloroplast;OMPFB	O.I.	C.G.	H.G.
20.7	99.6	91.2	At1g02730	839467	ATCSLD5	Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems.	O.I.	C.G.	H.G.
19.4	99.6	9.3	At4g03270	828000	CYCD6	F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:nucleus;MPOFV	O.I.	C.G.	H.G.
19.2	99.6	45.4	At3g03710	821181	RIF10 (resistant to inhibition with FSM 10)	Mutants impaired in the expression of this gene have been selected through their resistance to fosmidomycin, a strong inhibitor of DXR, an enzyme of the methylerythritol-dependent IPP biosynthesis pathway. The pathway enzymes were upregulated in the mutant seedlings.	O.I.	C.G.	H.G.
18.5	99.5	48.0	At5g15360	831388	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.5	99.5	60.4	At1g12860	837843	SCRM2 (SCREAM 2)	Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation.	O.I.	C.G.	H.G.
15.6	99.5	46.8	At5g10690	830933	pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein	F:unknown;P:biological_process unknown;C:chloroplast;POMFBA	O.I.	C.G.	H.G.
15.6	99.5	26.4	At1g06100	837119	fatty acid desaturase family protein	F:oxidoreductase activity;P:lipid metabolic process;C:unknown;BOMFPV	O.I.	C.G.	H.G.
15.4	99.5	27.2	At5g57590	835863	BIO1 (biotin auxotroph 1)	Mutant complemented by E coli Bio A gene encoding 7,8-diaminopelargonic acid aminotransferase.	O.I.	C.G.	H.G.
15.0	99.4	116.5	At5g47500	834800	pectinesterase family protein	F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
15.0	99.4	12.6	At4g21270	827876	ATK1 (ARABIDOPSIS THALIANA KINESIN 1)	Encodes a kinesin-like motor protein heavy chain. Loss of function mutations have reduced fertility and are defective in spindle formation in male meiosis.	O.I.	C.G.	H.G.
14.3	99.4	42.4	At3g49260	824087	iqd21 (IQ-domain 21)	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOFB	O.I.	C.G.	H.G.
14.1	99.4	40.4	At3g17680	821035	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF	O.I.	C.G.	H.G.
14.0	99.4	19.8	At1g76310	843964	CYCB2	core cell cycle genes	O.I.	C.G.	H.G.
13.9	99.4	46.0	At1g60590	842353	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBMOVA	O.I.	C.G.	H.G.
13.6	99.4	22.4	At4g00480	827965	myc-related transcription factor (MYC1)	MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminus	O.I.	C.G.	H.G.
13.2	99.4	60.4	At3g04260	819581	PTAC3 (PLASTID TRANSCRIPTIONALLY ACTIVE3)	F:DNA binding, nucleic acid binding;P:unknown;C:plastid chromosome, nucleus, chloroplast, nucleoid, membrane;MOPFBVA	O.I.	C.G.	H.G.
12.9	99.3	36.9	At5g18570	831975	GTP1/OBG family protein	F:GTP binding, nucleotide binding;P:unknown;C:intracellular, chloroplast;BOMFAPV	O.I.	C.G.	H.G.
12.8	99.3	39.8	At4g34250	829574	KCS16 (3-KETOACYL-COA SYNTHASE 16)	Encodes KCS16, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
12.5	99.3	206.9	At5g48490	834905	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
12.0	99.3	26.8	At1g11600	837704	CYP77B1	member of CYP77B	O.I.	C.G.	H.G.
12.0	99.3	20.3	At5g60930	836214	chromosome-associated kinesin, putative	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFBPAV	O.I.	C.G.	H.G.
11.9	99.3	57.6	At1g15290	838097	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;MBOFPAV	O.I.	C.G.	H.G.
11.8	99.3	94.0	At3g14110	820628	FLU (FLUORESCENT IN BLUE LIGHT)	Encodes a novel coiled-coil, TPR domain containing protein that is localized to the chloroplast membrane and is involved in chlorophyll biosynthesis. Mutants accumulate protochlorophyllide, an intermediate in the chlorophyll biosynthesis pathway, in dark and release singlet oxygen in plastids in a controlled and non-invasive manner upon a dark/light shift.	O.I.	C.G.	H.G.
11.8	99.3	33.4	At4g33000	829437	CBL10 (CALCINEURIN B-LIKE 10)	Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis.	O.I.	C.G.	H.G.
11.7	99.3	22.0	At1g03780	839140	targeting protein-related	Homolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting, one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase.	O.I.	C.G.	H.G.
11.6	99.3	18.7	At5g51910	835266	TCP family transcription factor, putative	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.5	99.3	34.6	At2g30695	817620	-	F:molecular_function unknown;P:protein folding, protein transport;C:chloroplast stroma, chloroplast;BOP	O.I.	C.G.	H.G.
11.4	99.3	12.5	At3g20150	821558	kinesin motor family protein	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOFPBAV	O.I.	C.G.	H.G.
11.3	99.3	21.9	At4g19240	827664	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.3	99.3	18.5	At3g57830	824952	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
11.2	99.2	17.2	At5g55580	835652	mitochondrial transcription termination factor family protein / mTERF family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
10.8	99.2	48.2	At1g30520	839932	AAE14 (Acyl-Activating Enzyme 14)	Encodes a chloroplast O-succinylbenzoyl-CoA ligase. Involved in phylloquinone biosynthesis. Knock mutant is seedling lethal.	O.I.	C.G.	H.G.
10.7	99.2	56.9	At1g14410	838003	WHY1 (WHIRLY 1)	Encodes a homolog of the potato p24 protein. Binds single strand telomeric repeats. Negatively regulates telomerase activity and telomere length.	O.I.	C.G.	H.G.
10.7	99.2	50.5	At3g01550	821114	PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2)	F:antiporter activity, triose-phosphate transmembrane transporter activity;P:triose phosphate transport, transport;C:integral to membrane, chloroplast, membrane;PMFOBA	O.I.	C.G.	H.G.
10.6	99.2	44.1	At4g39510	830105	CYP96A12	member of CYP96A	O.I.	C.G.	H.G.
10.6	99.2	20.3	At5g46740	834717	UBP21 (UBIQUITIN-SPECIFIC PROTEASE 21)	Encodes a ubiquitin-specific protease.	O.I.	C.G.	H.G.
10.6	99.2	17.1	At4g01730	826911	zinc ion binding	F:zinc ion binding;P:biological_process unknown;C:unknown;MOFP	O.I.	C.G.	H.G.
10.5	99.2	82.8	At3g26744	822287	ICE1 (INDUCER OF CBF EXPRESSION 1)	Encodes a MYC-like bHLH transcriptional activator that binds specifically to the MYC recognition sequences in the CBF3 promoter. Mutants are defective in cold-regulated gene expression. Cold stress triggers protein degradation of nuclear GFPICE1 protein, and the RING finger protein HOS1 is required. Sumoylation of ICE1 controls CBF3/DREB1A expression and freezing tolerance.	O.I.	C.G.	H.G.
10.5	99.2	30.1	At3g13180	820508	NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein	F:RNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;BOMFAP	O.I.	C.G.	H.G.
10.5	99.2	14.4	At4g14200	827060	unknown protein	F:unknown;P:biological_process unknown;C:unknown;MBOFPA	O.I.	C.G.	H.G.
10.4	99.2	100.5	At5g03940	830273	CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT)	mutant has Yellow first leaves; Chloroplast Signal Recognition Particle Subunit	O.I.	C.G.	H.G.
10.4	99.2	28.3	At2g40960	818696	nucleic acid binding	F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
10.3	99.2	203.4	At5g58250	835937	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast;OBP	O.I.	C.G.	H.G.
10.3	99.2	11.2	At4g34650	829617	SQS2 (SQUALENE SYNTHASE 2)	Encodes a protein with similarity to squalene synthase which catalyzes the first committed step in sterol biosynthesis. To date no experimental evidence exists that SQS2 functions as a squalene synthase and some experiments indicate it does not have this function.	O.I.	C.G.	H.G.
10.2	99.2	138.8	At1g01060	839341	LHY (LATE ELONGATED HYPOCOTYL)	LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1	O.I.	C.G.	H.G.
10.1	99.2	99.8	At1g06950	837205	TIC110 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110)	Encodes a protein thought to be a part of the translocon at the chloroplast inner envelope. Involved in protein import into the chloroplast and chloroplast biogenesis.	O.I.	C.G.	H.G.
9.9	99.1	59.6	At2g23000	816831	scpl10 (serine carboxypeptidase-like 10)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
9.7	99.1	291.7	At2g42840	818884	PDF1 (PROTODERMAL FACTOR 1)	Encodes a putative extracellular proline-rich protein is exclusively expressed in the L1 layer of vegetative, inflorescence and floral meristems and the protoderm of organ primordia.	O.I.	C.G.	H.G.
9.7	99.1	43.1	At1g69200	843251	kinase	F:kinase activity;P:acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:nucleoid;BOPAMF	O.I.	C.G.	H.G.
9.7	99.1	14.4	At5g46880	834733	HB-7 (HOMEOBOX-7)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MPFOB	O.I.	C.G.	H.G.
9.6	99.1	23.4	At1g05230	839256	HDG2 (HOMEODOMAIN GLABROUS 2)	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.	O.I.	C.G.	H.G.
9.5	99.1	83.8	At1g08560	837378	SYP111 (SYNTAXIN OF PLANTS 111)	member of SYP11 Gene Family	O.I.	C.G.	H.G.
9.4	99.1	106.4	At5g64940	836618	ATATH13	Encodes a member of ATH subfamily of ATP-binding cassette (ABC) proteins.	O.I.	C.G.	H.G.
9.4	99.1	49.4	At3g10690	820238	DNA gyrase subunit A family protein	F:DNA topoisomerase activity, DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, catalytic activity, ATP binding;P:DNA topological change, DNA metabolic process;C:mitochondrion, chloroplast, nucleoid;OBMFVPA	O.I.	C.G.	H.G.
9.3	99.1	42.0	At2g34640	818029	PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12)	Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.	O.I.	C.G.	H.G.
9.3	99.1	6.4	At3g15550	820794	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
9.2	99.1	72.6	At3g56370	824804	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
9.2	99.1	35.9	At5g57180	835824	CIA2 (CHLOROPLAST IMPORT APPARATUS 2)	Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast.	O.I.	C.G.	H.G.
9.2	99.1	27.0	At3g16260	820872	TRZ4 (TRNASE Z 4)	Encodes a tRNase Z.	O.I.	C.G.	H.G.
9.2	99.1	14.7	At1g15570	838127	CYCA2	A2-type cyclin. Negatively regulates endocycles and acts as a key regulator of ploidy levels in Arabidopsis endoreduplication. Interacts physically with CDKA;1. Expressed preferentially in trichomes and young developing tissues.	O.I.	C.G.	H.G.
9.1	99.1	17.5	At5g07180	830609	ERL2 (ERECTA-LIKE 2)	Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments.	O.I.	C.G.	H.G.
8.9	99.0	46.5	At4g26370	828743	antitermination NusB domain-containing protein	F:RNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;BOP	O.I.	C.G.	H.G.
8.9	99.0	31.4	At5g05670	830451	signal recognition particle binding	F:signal recognition particle binding;P:unknown;C:endoplasmic reticulum, plasma membrane;MOFPBA	O.I.	C.G.	H.G.
8.9	99.0	25.1	At3g13490	820551	OVA5 (OVULE ABORTION 5)	Encodes a dual targeted lysyl-tRNA ligase that is found both in the mitochondrion and the chloroplast. Plants mutated in this gene exhibit an ovule abortion phenotype.	O.I.	C.G.	H.G.
8.8	99.0	96.8	At1g47530	841162	ripening-responsive protein, putative	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport, ripening;C:plasma membrane, membrane;BOPFMA	O.I.	C.G.	H.G.
8.8	99.0	30.2	At3g49140	824075	-	F:unknown;P:unknown;C:unknown;PBMOFVA	O.I.	C.G.	H.G.
8.7	99.0	45.2	At3g62910	825466	APG3 (ALBINO AND PALE GREEN)	Isolated in a screen for chloroplast development mutants. Pale green, albino seedlings arrest early in seedling development.	O.I.	C.G.	H.G.
8.7	99.0	33.2	At4g34220	829571	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM184152
Assay name	35S:ATR1_like_miR_rep2
GSE experiment	GSE7570: ATR1_like_Clade_OE_and_miR

Microarray experiments to specifically-expressed genes

GSM ID GSM184152 Assay name 35S:ATR1_like_miR_rep2 GSE experiment GSE7570: ATR1_like_Clade_OE_and_miR

GSM ID GSM184152

Assay name 35S:ATR1_like_miR_rep2

GSE experiment GSE7570: ATR1_like_Clade_OE_and_miR