CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184151

Assay name ATR1_OE_rep2

GSE experiment GSE7570: ATR1_like_Clade_OE_and_miR

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
293.8 100.0 237.5 At5g60890 836210 MYB34 (MYB DOMAIN PROTEIN 34) Myb-like transcription factor that modulates expression of ASA1, a key point of control in the tryptophan pathway; mutant has deregulated expression of ASA1 in dominant allele. Loss of function allele suggests ATR1 also functions at a control point for regulating indole glucosinolate homeostasis. O.I. C.G. H.G.
103.5 99.9 238.6 At2g22330 816765 CYP79B3 Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates. O.I. C.G. H.G.
80.0 99.9 148.5 At5g26220 832691 ChaC-like family protein F:molecular_function unknown;P:response to lead ion, response to cadmium ion;C:cellular_component unknown;BMOFP O.I. C.G. H.G.
75.2 99.9 24.4 At4g16920 827400 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFVA O.I. C.G. H.G.
64.1 99.8 151.3 At4g14680 827118 APS3 ATP sulfurylase O.I. C.G. H.G.
57.8 99.8 73.9 At4g33000 829437 CBL10 (CALCINEURIN B-LIKE 10) Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis. O.I. C.G. H.G.
56.0 99.8 100.2 At5g01500 831861 mitochondrial substrate carrier family protein encodes an ATP/ADP carrier that is located to the thylakoid membrane involved in providing ATP during thylakoid biogenesis and turnover O.I. C.G. H.G.
51.1 99.8 27.7 At1g12030 837755 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
46.8 99.8 282.6 At4g39940 830153 AKN2 (APS-kinase 2) adenosine-5'-phosphosulfate-kinase (akn2) mRNA, complete O.I. C.G. H.G.
43.3 99.8 87.2 At5g24760 832545 alcohol dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:chloroplast;BOPFMAV O.I. C.G. H.G.
43.1 99.8 258.5 At4g39950 830154 CYP79B2 Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates. O.I. C.G. H.G.
41.5 99.8 59.8 At1g76110 843943 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein F:transcription factor activity;P:regulation of transcription;C:intracellular, nucleus;MOFP O.I. C.G. H.G.
40.1 99.8 172.6 At3g54500 824615 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB O.I. C.G. H.G.
40.0 99.8 53.5 At2g38780 818460 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBM O.I. C.G. H.G.
39.2 99.8 93.1 At1g12860 837843 SCRM2 (SCREAM 2) Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation. O.I. C.G. H.G.
38.7 99.8 176.7 At3g23570 821936 dienelactone hydrolase family protein F:hydrolase activity;P:response to salt stress;C:cellular_component unknown;BFPOMA O.I. C.G. H.G.
35.9 99.7 249.2 At5g17990 831666 TRP1 (tryptophan biosynthesis 1) Encodes the tryptophan biosynthetic enzyme phosphoribosylanthranilate transferase (PAT1, called trpD in bacteria). Converts anthranilate and phosphoribosylpyrophosphate into phosphoribosylanthranilate and inorganic pyrophosphate. O.I. C.G. H.G.
35.9 99.7 41.5 At5g57590 835863 BIO1 (biotin auxotroph 1) Mutant complemented by E coli Bio A gene encoding 7,8-diaminopelargonic acid aminotransferase. O.I. C.G. H.G.
30.3 99.7 208.6 At5g63980 836519 SAL1 Encodes a bifunctional protein that has 3'(2'),5'-bisphosphate nucleotidase and inositol polyphosphate 1-phosphatase activities and rescues sulfur assimilation mutants in yeast. It is involved in the response to cold, drought (negative regulator of drought tolerance), and ABA. Mutants in this gene exhibit enhanced induction of stress genes in response to cold, ABA, salt and dehydration due to higher accumulation of the second messenger, inositol (1,4,5)- triphosphate (IP(3)). Involved in degradation of small mRNAs. Mutants also affect the accumulation of miRNA target cleavage products. Regulates light-dependent repression of hypocotyl elongation and flowering time via its 3'(2'),5'-bisphosphate nucleotidase activity. O.I. C.G. H.G.
30.2 99.7 8.0 At2g42380 818839 bZIP transcription factor family protein Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP61. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells. O.I. C.G. H.G.
29.1 99.7 66.1 At1g75100 843847 JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1) Contains a J-domain at the C-terminus which is similar to the J-domain of auxilin, a clathrin-uncoating factor in cow, yeast and worm. Arabidopsis contains 6 other proteins similar to auxilin. Expressed in leaves and stems, but not in roots. Localized in the cytoplasm. Required for the chloroplast accumulation response, but not for the avoidance response. No molecular function known. O.I. C.G. H.G.
28.9 99.7 124.4 At1g12250 837778 thylakoid lumenal protein-related F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOAPV O.I. C.G. H.G.
28.5 99.7 29.4 At2g29300 817479 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
28.0 99.7 29.2 At1g80080 844348 TMM (TOO MANY MOUTHS) Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development. O.I. C.G. H.G.
26.9 99.7 32.9 At5g55570 835651 unknown protein F:unknown;P:unknown;C:chloroplast;PM O.I. C.G. H.G.
26.6 99.7 85.4 At1g62250 842522 unknown protein F:unknown;P:unknown;C:chloroplast;P O.I. C.G. H.G.
26.5 99.7 137.6 At1g01790 837332 KEA1 (K EFFLUX ANTIPORTER 1) K efflux antiporter KEA1 O.I. C.G. H.G.
26.4 99.7 66.5 At3g58010 824970 unknown protein F:unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast, plastoglobule;PFO O.I. C.G. H.G.
25.7 99.7 70.2 At4g03400 827938 DFL2 (DWARF IN LIGHT 2) Encodes a GH3-related gene involved in red light-specific hypocotyl elongation. Analysis of sense and antisense transgenic plants suggests that DFL2 is located downstream of red light signal transduction and determines the degree of hypocotyl elongation. O.I. C.G. H.G.
25.6 99.7 51.2 At5g27730 832835 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMP O.I. C.G. H.G.
25.4 99.6 22.1 At1g34245 840324 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
25.1 99.6 184.5 At2g40610 818656 ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. O.I. C.G. H.G.
24.8 99.6 30.5 At2g32640 817824 unknown protein F:unknown;P:unknown;C:chloroplast;BPO O.I. C.G. H.G.
24.1 99.6 34.5 At3g01490 821136 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
23.4 99.6 64.8 At1g62800 842579 ASP4 (ASPARTATE AMINOTRANSFERASE 4) Encodes aspartate aminotransferase (Asp4). O.I. C.G. H.G.
23.2 99.6 8.7 At4g26540 828760 kinase F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
23.1 99.6 8.8 At5g57600 - - O.I. C.G. H.G.
23.0 99.6 32.5 At3g05340 819698 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF O.I. C.G. H.G.
22.7 99.6 92.0 At3g59780 825147 - F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPV O.I. C.G. H.G.
22.4 99.6 110.6 At1g70940 843432 PIN3 (PIN-FORMED 3) A regulator of auxin efflux and involved in differential growth. PIN3 is expressed in gravity-sensing tissues, with PIN3 protein accumulating predominantly at the lateral cell surface. PIN3 localizes to the plasma membrane and to vesicles. In roots, PIN3 is expressed without pronounced polarity in tiers two and three of the columella cells, at the basal side of vascular cells, and to the lateral side of pericycle cells of the elongation zone. PIN3 overexpression inhibits root cell growth. Protein phosphorylation plays a role in PIN3 trafficking to the plasma membrane. O.I. C.G. H.G.
22.4 99.6 71.7 At5g47870 834838 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO O.I. C.G. H.G.
22.1 99.6 39.5 At4g25280 828631 adenylate kinase family protein F:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, phosphotransferase activity, phosphate group as acceptor, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
21.7 99.6 113.3 At2g01420 814670 PIN4 (PIN-FORMED 4) Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452). O.I. C.G. H.G.
21.5 99.6 68.3 At5g52570 835334 BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) Converts β-carotene to zeaxanthin via cryptoxanthin. O.I. C.G. H.G.
21.5 99.6 37.8 At5g57960 835907 GTP-binding family protein F:GTP binding;P:unknown;C:chloroplast;BOMAPF O.I. C.G. H.G.
21.0 99.6 28.8 At1g69523 843286 UbiE/COQ5 methyltransferase family protein F:methyltransferase activity;P:metabolic process;C:chloroplast;BOFAMP O.I. C.G. H.G.
20.8 99.6 48.9 At1g79700 844309 ovule development protein, putative F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POB O.I. C.G. H.G.
20.3 99.6 100.6 At3g47295 823883 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
20.3 99.6 97.5 At5g48850 834943 ATSDI1 (SULPHUR DEFICIENCY-INDUCED 1) homologous to the wheat sulphate deficiency-induced gene sdi1. Expression in root and leaf is induced by sulfur starvation. Knockout mutants retained higher root and leaf sulfate concentrations, indicating a role in regulation of stored sulfate pools. O.I. C.G. H.G.
19.2 99.6 21.9 At3g06100 819783 NIP7 F:water channel activity;P:transport;C:membrane;BPMOFAV O.I. C.G. H.G.
17.8 99.5 60.5 At1g29700 839847 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPF O.I. C.G. H.G.
17.5 99.5 17.3 At1g33080 840204 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
17.2 99.5 165.4 At5g05730 830457 ASA1 (ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1) ASA1 encodes the alpha subunit of anthranilate synthase, which catalyzes the rate-limiting step of tryptophan synthesis. ASA1 is induced by ethylene, and forms a link between ethylene signalling and auxin synthesis in roots. O.I. C.G. H.G.
17.2 99.5 29.9 At1g68190 843148 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM O.I. C.G. H.G.
17.2 99.5 16.6 At1g49730 841396 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
17.1 99.5 45.1 At1g70610 843398 ATTAP1 member of TAP subfamily O.I. C.G. H.G.
16.8 99.5 18.6 At1g77990 844134 AST56 cDNA encoding a sulfate transporter. O.I. C.G. H.G.
16.5 99.5 12.0 At3g09600 820117 myb family transcription factor F:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOF O.I. C.G. H.G.
16.4 99.5 24.0 At4g38950 830050 kinesin motor family protein F:microtubule motor activity, ATP binding;P:microtubule-based process, microtubule-based movement;C:microtubule associated complex;MOPF O.I. C.G. H.G.
16.2 99.5 45.1 At3g49260 824087 iqd21 (IQ-domain 21) F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOFB O.I. C.G. H.G.
16.2 99.5 38.8 At4g18810 827615 binding / catalytic/ transcription repressor F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:chloroplast, vacuole;BOPFAM O.I. C.G. H.G.
16.1 99.5 177.5 At2g04400 814980 indole-3-glycerol phosphate synthase (IGPS) F:indole-3-glycerol-phosphate synthase activity;P:tryptophan biosynthetic process;C:chloroplast;BOAFP O.I. C.G. H.G.
16.1 99.5 94.6 At1g60550 842350 ECHID (ENOYL-COA HYDRATASE/ISOMERASE D) F:naphthoate synthase activity, catalytic activity;P:vitamin K biosynthetic process, metabolic process, menaquinone biosynthetic process;C:peroxisome;BOMFPA O.I. C.G. H.G.
16.0 99.5 58.5 At1g30520 839932 AAE14 (Acyl-Activating Enzyme 14) Encodes a chloroplast O-succinylbenzoyl-CoA ligase. Involved in phylloquinone biosynthesis. Knock mutant is seedling lethal. O.I. C.G. H.G.
15.9 99.5 25.1 At3g56160 824782 bile acid:sodium symporter F:bile acid:sodium symporter activity;P:sodium ion transport;C:chloroplast, chloroplast envelope;BOMPFA O.I. C.G. H.G.
15.6 99.5 21.0 At1g34580 840362 monosaccharide transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA O.I. C.G. H.G.
15.6 99.5 20.1 At1g72640 843596 binding / catalytic F:binding, catalytic activity;P:metabolic process;C:chloroplast thylakoid membrane, chloroplast;BPOMA O.I. C.G. H.G.
15.3 99.4 99.0 At1g16080 838178 unknown protein F:unknown;P:unknown;C:apoplast, chloroplast stroma, chloroplast, chloroplast envelope;POB O.I. C.G. H.G.
15.2 99.4 83.0 At4g39970 830158 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast, chloroplast stroma, chloroplast envelope;BOPMFAV O.I. C.G. H.G.
15.1 99.4 209.8 At5g65730 836702 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:response to water deprivation;C:endomembrane system, cell wall, apoplast;PFBO O.I. C.G. H.G.
15.1 99.4 134.6 At5g64940 836618 ATATH13 Encodes a member of ATH subfamily of ATP-binding cassette (ABC) proteins. O.I. C.G. H.G.
15.0 99.4 160.5 At2g39470 818532 PPL2 (PsbP-like protein 2) F:calcium ion binding;P:photosynthesis;C:in 6 components;PBO O.I. C.G. H.G.
15.0 99.4 74.5 At1g36370 840543 SHM7 (serine hydroxymethyltransferase 7) Encodes a putative serine hydroxymethyltransferase. O.I. C.G. H.G.
14.9 99.4 59.5 At3g01550 821114 PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2) F:antiporter activity, triose-phosphate transmembrane transporter activity;P:triose phosphate transport, transport;C:integral to membrane, chloroplast, membrane;PMFOBA O.I. C.G. H.G.
14.9 99.4 26.5 At1g69160 843247 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMV O.I. C.G. H.G.
14.6 99.4 108.5 At2g29290 817478 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
14.5 99.4 19.6 At5g44510 834478 TAO1 (TARGET OF AVRB OPERATION1) Encodes TAO1 (Target of AvrB Operation), a TIR-NB-LRR protein that contributes to disease resistance induced by the Pseudomonas syringae effector AvrB. O.I. C.G. H.G.
14.4 99.4 103.1 At5g44720 834501 molybdenum cofactor sulfurase family protein F:molybdenum ion binding, Mo-molybdopterin cofactor sulfurase activity, pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:cellular_component unknown;BMFOPA O.I. C.G. H.G.
14.1 99.4 84.4 At3g59760 825145 OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C) Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasC O.I. C.G. H.G.
14.0 99.4 43.2 At2g26540 817195 HEMD F:uroporphyrinogen-III synthase activity;P:tetrapyrrole biosynthetic process, porphyrin biosynthetic process;C:chloroplast;BOPAF O.I. C.G. H.G.
13.9 99.4 79.3 At1g18590 838440 SOT17 (SULFOTRANSFERASE 17) encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates. O.I. C.G. H.G.
13.7 99.4 125.4 At4g37760 829932 SQE3 (squalene epoxidase 3) F:squalene monooxygenase activity;P:response to jasmonic acid stimulus, sterol biosynthetic process, response to wounding;C:endomembrane system, integral to membrane;BOFMPA O.I. C.G. H.G.
13.7 99.4 29.8 At2g39190 818504 ATATH8 member of ATH subfamily O.I. C.G. H.G.
13.7 99.4 21.4 At3g50240 824186 KICP-02 Encodes a kinesin-related protein. O.I. C.G. H.G.
13.6 99.4 373.0 At4g31500 829277 CYP83B1 (CYTOCHROME P450 MONOOXYGENASE 83B1) Encodes an oxime-metabolizing enzyme in the biosynthetic pathway of glucosinolates. Is required for phytochrome signal transduction in red light. Mutation confers auxin overproduction. O.I. C.G. H.G.
13.4 99.4 84.2 At1g12520 837808 ATCCS (COPPER CHAPERONE FOR SOD1) Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta. O.I. C.G. H.G.
13.3 99.4 52.2 At2g21340 816673 antiporter/ drug transporter F:drug transporter activity, antiporter activity;P:multidrug transport;C:chloroplast;BOPAFM O.I. C.G. H.G.
13.3 99.4 50.4 At3g02830 821230 ZFN1 (ZINC FINGER PROTEIN 1) Encodes a zinc finger protein. O.I. C.G. H.G.
13.2 99.4 142.4 At2g29650 817515 PHT4 Encodes an inorganic phosphate transporter (PHT4;1) that is localized to the thylakoid membrane. O.I. C.G. H.G.
13.2 99.4 65.5 At1g67840 843110 CSK (CHLOROPLAST SENSOR KINASE) Encodes a chloroplast sensor kinase (CSK) that shares common ancestors with cyanobacterial histidine sensor kinases. CSK is synthesised in the cytosol and imported into the chloroplast as a protein precusor. CSK is autophosphorylated and required for control of transcription of chloroplast genes by the redox state of an electron carrier connecting photosystems I and II. O.I. C.G. H.G.
13.1 99.4 194.2 At5g64840 836607 ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5) member of GCN subfamily O.I. C.G. H.G.
13.1 99.4 168.6 At3g54640 824629 TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN) Catalyzes the conversion of indole-3-glycerolphosphate to indole, the penultimate reaction in the biosynthesis of tryptophan. Functions as a heterocomplex with tryptophan synthase beta subunit (TSA2). O.I. C.G. H.G.
13.1 99.4 86.7 At5g08650 830766 GTP-binding protein LepA, putative F:GTP binding, translation elongation factor activity, GTPase activity;P:unknown;C:chloroplast;BOMFPA O.I. C.G. H.G.
13.1 99.4 67.3 At4g17245 827437 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
13.0 99.4 129.3 At1g44446 841029 CH1 (CHLORINA 1) Encodes chlorophyllide a oxygenase which converts chlorophyllide a to chlorophyllide b by catalyzing two successive hydroxylations at the 7-methyl group of chlorophyllide a . Mutants are deficient in pigments that associate with thylakoid membrane proteins, lacking chlorophyll b and light-harvesting proteins of photosystem II. The protein was shown through cross-linking experiments to interact with Toc75, Toc34, Tic40, Tic20 and Tic22. O.I. C.G. H.G.
12.9 99.3 70.1 At1g52510 841682 hydrolase, alpha/beta fold family protein F:hydrolase activity, catalytic activity;P:unknown;C:chloroplast, chloroplast envelope;BOPMFA O.I. C.G. H.G.
12.9 99.3 20.5 At5g02170 831896 amino acid transporter family protein F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPFOBAV O.I. C.G. H.G.
12.8 99.3 42.6 At5g20380 832160 PHT4 Encodes an inorganic phosphate transporter (PHT4;5). O.I. C.G. H.G.
12.7 99.3 137.6 At5g61670 836289 - Encodes a close homolog of the Cauliflower OR (Orange) protein. The function of OR is to induce the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation. Both proteins contain a Cysteine-rich zinc finger domain that is highly specific to DnaJ-like molecular chaperons. O.I. C.G. H.G.
12.7 99.3 54.4 At5g59750 836096 riboflavin biosynthesis protein, putative F:3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity;P:riboflavin biosynthetic process;C:chloroplast;BOFAP O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
293.8	100.0	237.5	At5g60890	836210	MYB34 (MYB DOMAIN PROTEIN 34)	Myb-like transcription factor that modulates expression of ASA1, a key point of control in the tryptophan pathway; mutant has deregulated expression of ASA1 in dominant allele. Loss of function allele suggests ATR1 also functions at a control point for regulating indole glucosinolate homeostasis.	O.I.	C.G.	H.G.
103.5	99.9	238.6	At2g22330	816765	CYP79B3	Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.	O.I.	C.G.	H.G.
80.0	99.9	148.5	At5g26220	832691	ChaC-like family protein	F:molecular_function unknown;P:response to lead ion, response to cadmium ion;C:cellular_component unknown;BMOFP	O.I.	C.G.	H.G.
75.2	99.9	24.4	At4g16920	827400	disease resistance protein (TIR-NBS-LRR class), putative	F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFVA	O.I.	C.G.	H.G.
64.1	99.8	151.3	At4g14680	827118	APS3	ATP sulfurylase	O.I.	C.G.	H.G.
57.8	99.8	73.9	At4g33000	829437	CBL10 (CALCINEURIN B-LIKE 10)	Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis.	O.I.	C.G.	H.G.
56.0	99.8	100.2	At5g01500	831861	mitochondrial substrate carrier family protein	encodes an ATP/ADP carrier that is located to the thylakoid membrane involved in providing ATP during thylakoid biogenesis and turnover	O.I.	C.G.	H.G.
51.1	99.8	27.7	At1g12030	837755	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
46.8	99.8	282.6	At4g39940	830153	AKN2 (APS-kinase 2)	adenosine-5'-phosphosulfate-kinase (akn2) mRNA, complete	O.I.	C.G.	H.G.
43.3	99.8	87.2	At5g24760	832545	alcohol dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:chloroplast;BOPFMAV	O.I.	C.G.	H.G.
43.1	99.8	258.5	At4g39950	830154	CYP79B2	Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.	O.I.	C.G.	H.G.
41.5	99.8	59.8	At1g76110	843943	high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein	F:transcription factor activity;P:regulation of transcription;C:intracellular, nucleus;MOFP	O.I.	C.G.	H.G.
40.1	99.8	172.6	At3g54500	824615	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB	O.I.	C.G.	H.G.
40.0	99.8	53.5	At2g38780	818460	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBM	O.I.	C.G.	H.G.
39.2	99.8	93.1	At1g12860	837843	SCRM2 (SCREAM 2)	Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation.	O.I.	C.G.	H.G.
38.7	99.8	176.7	At3g23570	821936	dienelactone hydrolase family protein	F:hydrolase activity;P:response to salt stress;C:cellular_component unknown;BFPOMA	O.I.	C.G.	H.G.
35.9	99.7	249.2	At5g17990	831666	TRP1 (tryptophan biosynthesis 1)	Encodes the tryptophan biosynthetic enzyme phosphoribosylanthranilate transferase (PAT1, called trpD in bacteria). Converts anthranilate and phosphoribosylpyrophosphate into phosphoribosylanthranilate and inorganic pyrophosphate.	O.I.	C.G.	H.G.
35.9	99.7	41.5	At5g57590	835863	BIO1 (biotin auxotroph 1)	Mutant complemented by E coli Bio A gene encoding 7,8-diaminopelargonic acid aminotransferase.	O.I.	C.G.	H.G.
30.3	99.7	208.6	At5g63980	836519	SAL1	Encodes a bifunctional protein that has 3'(2'),5'-bisphosphate nucleotidase and inositol polyphosphate 1-phosphatase activities and rescues sulfur assimilation mutants in yeast. It is involved in the response to cold, drought (negative regulator of drought tolerance), and ABA. Mutants in this gene exhibit enhanced induction of stress genes in response to cold, ABA, salt and dehydration due to higher accumulation of the second messenger, inositol (1,4,5)- triphosphate (IP(3)). Involved in degradation of small mRNAs. Mutants also affect the accumulation of miRNA target cleavage products. Regulates light-dependent repression of hypocotyl elongation and flowering time via its 3'(2'),5'-bisphosphate nucleotidase activity.	O.I.	C.G.	H.G.
30.2	99.7	8.0	At2g42380	818839	bZIP transcription factor family protein	Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP61. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.	O.I.	C.G.	H.G.
29.1	99.7	66.1	At1g75100	843847	JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1)	Contains a J-domain at the C-terminus which is similar to the J-domain of auxilin, a clathrin-uncoating factor in cow, yeast and worm. Arabidopsis contains 6 other proteins similar to auxilin. Expressed in leaves and stems, but not in roots. Localized in the cytoplasm. Required for the chloroplast accumulation response, but not for the avoidance response. No molecular function known.	O.I.	C.G.	H.G.
28.9	99.7	124.4	At1g12250	837778	thylakoid lumenal protein-related	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOAPV	O.I.	C.G.	H.G.
28.5	99.7	29.4	At2g29300	817479	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
28.0	99.7	29.2	At1g80080	844348	TMM (TOO MANY MOUTHS)	Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development.	O.I.	C.G.	H.G.
26.9	99.7	32.9	At5g55570	835651	unknown protein	F:unknown;P:unknown;C:chloroplast;PM	O.I.	C.G.	H.G.
26.6	99.7	85.4	At1g62250	842522	unknown protein	F:unknown;P:unknown;C:chloroplast;P	O.I.	C.G.	H.G.
26.5	99.7	137.6	At1g01790	837332	KEA1 (K EFFLUX ANTIPORTER 1)	K efflux antiporter KEA1	O.I.	C.G.	H.G.
26.4	99.7	66.5	At3g58010	824970	unknown protein	F:unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast, plastoglobule;PFO	O.I.	C.G.	H.G.
25.7	99.7	70.2	At4g03400	827938	DFL2 (DWARF IN LIGHT 2)	Encodes a GH3-related gene involved in red light-specific hypocotyl elongation. Analysis of sense and antisense transgenic plants suggests that DFL2 is located downstream of red light signal transduction and determines the degree of hypocotyl elongation.	O.I.	C.G.	H.G.
25.6	99.7	51.2	At5g27730	832835	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMP	O.I.	C.G.	H.G.
25.4	99.6	22.1	At1g34245	840324	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
25.1	99.6	184.5	At2g40610	818656	ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	O.I.	C.G.	H.G.
24.8	99.6	30.5	At2g32640	817824	unknown protein	F:unknown;P:unknown;C:chloroplast;BPO	O.I.	C.G.	H.G.
24.1	99.6	34.5	At3g01490	821136	protein kinase, putative	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
23.4	99.6	64.8	At1g62800	842579	ASP4 (ASPARTATE AMINOTRANSFERASE 4)	Encodes aspartate aminotransferase (Asp4).	O.I.	C.G.	H.G.
23.2	99.6	8.7	At4g26540	828760	kinase	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
23.1	99.6	8.8	At5g57600		-	-	O.I.	C.G.	H.G.
23.0	99.6	32.5	At3g05340	819698	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF	O.I.	C.G.	H.G.
22.7	99.6	92.0	At3g59780	825147	-	F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPV	O.I.	C.G.	H.G.
22.4	99.6	110.6	At1g70940	843432	PIN3 (PIN-FORMED 3)	A regulator of auxin efflux and involved in differential growth. PIN3 is expressed in gravity-sensing tissues, with PIN3 protein accumulating predominantly at the lateral cell surface. PIN3 localizes to the plasma membrane and to vesicles. In roots, PIN3 is expressed without pronounced polarity in tiers two and three of the columella cells, at the basal side of vascular cells, and to the lateral side of pericycle cells of the elongation zone. PIN3 overexpression inhibits root cell growth. Protein phosphorylation plays a role in PIN3 trafficking to the plasma membrane.	O.I.	C.G.	H.G.
22.4	99.6	71.7	At5g47870	834838	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO	O.I.	C.G.	H.G.
22.1	99.6	39.5	At4g25280	828631	adenylate kinase family protein	F:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, phosphotransferase activity, phosphate group as acceptor, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
21.7	99.6	113.3	At2g01420	814670	PIN4 (PIN-FORMED 4)	Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452).	O.I.	C.G.	H.G.
21.5	99.6	68.3	At5g52570	835334	BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)	Converts β-carotene to zeaxanthin via cryptoxanthin.	O.I.	C.G.	H.G.
21.5	99.6	37.8	At5g57960	835907	GTP-binding family protein	F:GTP binding;P:unknown;C:chloroplast;BOMAPF	O.I.	C.G.	H.G.
21.0	99.6	28.8	At1g69523	843286	UbiE/COQ5 methyltransferase family protein	F:methyltransferase activity;P:metabolic process;C:chloroplast;BOFAMP	O.I.	C.G.	H.G.
20.8	99.6	48.9	At1g79700	844309	ovule development protein, putative	F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POB	O.I.	C.G.	H.G.
20.3	99.6	100.6	At3g47295	823883	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
20.3	99.6	97.5	At5g48850	834943	ATSDI1 (SULPHUR DEFICIENCY-INDUCED 1)	homologous to the wheat sulphate deficiency-induced gene sdi1. Expression in root and leaf is induced by sulfur starvation. Knockout mutants retained higher root and leaf sulfate concentrations, indicating a role in regulation of stored sulfate pools.	O.I.	C.G.	H.G.
19.2	99.6	21.9	At3g06100	819783	NIP7	F:water channel activity;P:transport;C:membrane;BPMOFAV	O.I.	C.G.	H.G.
17.8	99.5	60.5	At1g29700	839847	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPF	O.I.	C.G.	H.G.
17.5	99.5	17.3	At1g33080	840204	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
17.2	99.5	165.4	At5g05730	830457	ASA1 (ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1)	ASA1 encodes the alpha subunit of anthranilate synthase, which catalyzes the rate-limiting step of tryptophan synthesis. ASA1 is induced by ethylene, and forms a link between ethylene signalling and auxin synthesis in roots.	O.I.	C.G.	H.G.
17.2	99.5	29.9	At1g68190	843148	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM	O.I.	C.G.	H.G.
17.2	99.5	16.6	At1g49730	841396	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
17.1	99.5	45.1	At1g70610	843398	ATTAP1	member of TAP subfamily	O.I.	C.G.	H.G.
16.8	99.5	18.6	At1g77990	844134	AST56	cDNA encoding a sulfate transporter.	O.I.	C.G.	H.G.
16.5	99.5	12.0	At3g09600	820117	myb family transcription factor	F:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOF	O.I.	C.G.	H.G.
16.4	99.5	24.0	At4g38950	830050	kinesin motor family protein	F:microtubule motor activity, ATP binding;P:microtubule-based process, microtubule-based movement;C:microtubule associated complex;MOPF	O.I.	C.G.	H.G.
16.2	99.5	45.1	At3g49260	824087	iqd21 (IQ-domain 21)	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOFB	O.I.	C.G.	H.G.
16.2	99.5	38.8	At4g18810	827615	binding / catalytic/ transcription repressor	F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:chloroplast, vacuole;BOPFAM	O.I.	C.G.	H.G.
16.1	99.5	177.5	At2g04400	814980	indole-3-glycerol phosphate synthase (IGPS)	F:indole-3-glycerol-phosphate synthase activity;P:tryptophan biosynthetic process;C:chloroplast;BOAFP	O.I.	C.G.	H.G.
16.1	99.5	94.6	At1g60550	842350	ECHID (ENOYL-COA HYDRATASE/ISOMERASE D)	F:naphthoate synthase activity, catalytic activity;P:vitamin K biosynthetic process, metabolic process, menaquinone biosynthetic process;C:peroxisome;BOMFPA	O.I.	C.G.	H.G.
16.0	99.5	58.5	At1g30520	839932	AAE14 (Acyl-Activating Enzyme 14)	Encodes a chloroplast O-succinylbenzoyl-CoA ligase. Involved in phylloquinone biosynthesis. Knock mutant is seedling lethal.	O.I.	C.G.	H.G.
15.9	99.5	25.1	At3g56160	824782	bile acid:sodium symporter	F:bile acid:sodium symporter activity;P:sodium ion transport;C:chloroplast, chloroplast envelope;BOMPFA	O.I.	C.G.	H.G.
15.6	99.5	21.0	At1g34580	840362	monosaccharide transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA	O.I.	C.G.	H.G.
15.6	99.5	20.1	At1g72640	843596	binding / catalytic	F:binding, catalytic activity;P:metabolic process;C:chloroplast thylakoid membrane, chloroplast;BPOMA	O.I.	C.G.	H.G.
15.3	99.4	99.0	At1g16080	838178	unknown protein	F:unknown;P:unknown;C:apoplast, chloroplast stroma, chloroplast, chloroplast envelope;POB	O.I.	C.G.	H.G.
15.2	99.4	83.0	At4g39970	830158	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast, chloroplast stroma, chloroplast envelope;BOPMFAV	O.I.	C.G.	H.G.
15.1	99.4	209.8	At5g65730	836702	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:response to water deprivation;C:endomembrane system, cell wall, apoplast;PFBO	O.I.	C.G.	H.G.
15.1	99.4	134.6	At5g64940	836618	ATATH13	Encodes a member of ATH subfamily of ATP-binding cassette (ABC) proteins.	O.I.	C.G.	H.G.
15.0	99.4	160.5	At2g39470	818532	PPL2 (PsbP-like protein 2)	F:calcium ion binding;P:photosynthesis;C:in 6 components;PBO	O.I.	C.G.	H.G.
15.0	99.4	74.5	At1g36370	840543	SHM7 (serine hydroxymethyltransferase 7)	Encodes a putative serine hydroxymethyltransferase.	O.I.	C.G.	H.G.
14.9	99.4	59.5	At3g01550	821114	PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2)	F:antiporter activity, triose-phosphate transmembrane transporter activity;P:triose phosphate transport, transport;C:integral to membrane, chloroplast, membrane;PMFOBA	O.I.	C.G.	H.G.
14.9	99.4	26.5	At1g69160	843247	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMV	O.I.	C.G.	H.G.
14.6	99.4	108.5	At2g29290	817478	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
14.5	99.4	19.6	At5g44510	834478	TAO1 (TARGET OF AVRB OPERATION1)	Encodes TAO1 (Target of AvrB Operation), a TIR-NB-LRR protein that contributes to disease resistance induced by the Pseudomonas syringae effector AvrB.	O.I.	C.G.	H.G.
14.4	99.4	103.1	At5g44720	834501	molybdenum cofactor sulfurase family protein	F:molybdenum ion binding, Mo-molybdopterin cofactor sulfurase activity, pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:cellular_component unknown;BMFOPA	O.I.	C.G.	H.G.
14.1	99.4	84.4	At3g59760	825145	OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C)	Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasC	O.I.	C.G.	H.G.
14.0	99.4	43.2	At2g26540	817195	HEMD	F:uroporphyrinogen-III synthase activity;P:tetrapyrrole biosynthetic process, porphyrin biosynthetic process;C:chloroplast;BOPAF	O.I.	C.G.	H.G.
13.9	99.4	79.3	At1g18590	838440	SOT17 (SULFOTRANSFERASE 17)	encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates.	O.I.	C.G.	H.G.
13.7	99.4	125.4	At4g37760	829932	SQE3 (squalene epoxidase 3)	F:squalene monooxygenase activity;P:response to jasmonic acid stimulus, sterol biosynthetic process, response to wounding;C:endomembrane system, integral to membrane;BOFMPA	O.I.	C.G.	H.G.
13.7	99.4	29.8	At2g39190	818504	ATATH8	member of ATH subfamily	O.I.	C.G.	H.G.
13.7	99.4	21.4	At3g50240	824186	KICP-02	Encodes a kinesin-related protein.	O.I.	C.G.	H.G.
13.6	99.4	373.0	At4g31500	829277	CYP83B1 (CYTOCHROME P450 MONOOXYGENASE 83B1)	Encodes an oxime-metabolizing enzyme in the biosynthetic pathway of glucosinolates. Is required for phytochrome signal transduction in red light. Mutation confers auxin overproduction.	O.I.	C.G.	H.G.
13.4	99.4	84.2	At1g12520	837808	ATCCS (COPPER CHAPERONE FOR SOD1)	Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta.	O.I.	C.G.	H.G.
13.3	99.4	52.2	At2g21340	816673	antiporter/ drug transporter	F:drug transporter activity, antiporter activity;P:multidrug transport;C:chloroplast;BOPAFM	O.I.	C.G.	H.G.
13.3	99.4	50.4	At3g02830	821230	ZFN1 (ZINC FINGER PROTEIN 1)	Encodes a zinc finger protein.	O.I.	C.G.	H.G.
13.2	99.4	142.4	At2g29650	817515	PHT4	Encodes an inorganic phosphate transporter (PHT4;1) that is localized to the thylakoid membrane.	O.I.	C.G.	H.G.
13.2	99.4	65.5	At1g67840	843110	CSK (CHLOROPLAST SENSOR KINASE)	Encodes a chloroplast sensor kinase (CSK) that shares common ancestors with cyanobacterial histidine sensor kinases. CSK is synthesised in the cytosol and imported into the chloroplast as a protein precusor. CSK is autophosphorylated and required for control of transcription of chloroplast genes by the redox state of an electron carrier connecting photosystems I and II.	O.I.	C.G.	H.G.
13.1	99.4	194.2	At5g64840	836607	ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5)	member of GCN subfamily	O.I.	C.G.	H.G.
13.1	99.4	168.6	At3g54640	824629	TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN)	Catalyzes the conversion of indole-3-glycerolphosphate to indole, the penultimate reaction in the biosynthesis of tryptophan. Functions as a heterocomplex with tryptophan synthase beta subunit (TSA2).	O.I.	C.G.	H.G.
13.1	99.4	86.7	At5g08650	830766	GTP-binding protein LepA, putative	F:GTP binding, translation elongation factor activity, GTPase activity;P:unknown;C:chloroplast;BOMFPA	O.I.	C.G.	H.G.
13.1	99.4	67.3	At4g17245	827437	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
13.0	99.4	129.3	At1g44446	841029	CH1 (CHLORINA 1)	Encodes chlorophyllide a oxygenase which converts chlorophyllide a to chlorophyllide b by catalyzing two successive hydroxylations at the 7-methyl group of chlorophyllide a . Mutants are deficient in pigments that associate with thylakoid membrane proteins, lacking chlorophyll b and light-harvesting proteins of photosystem II. The protein was shown through cross-linking experiments to interact with Toc75, Toc34, Tic40, Tic20 and Tic22.	O.I.	C.G.	H.G.
12.9	99.3	70.1	At1g52510	841682	hydrolase, alpha/beta fold family protein	F:hydrolase activity, catalytic activity;P:unknown;C:chloroplast, chloroplast envelope;BOPMFA	O.I.	C.G.	H.G.
12.9	99.3	20.5	At5g02170	831896	amino acid transporter family protein	F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPFOBAV	O.I.	C.G.	H.G.
12.8	99.3	42.6	At5g20380	832160	PHT4	Encodes an inorganic phosphate transporter (PHT4;5).	O.I.	C.G.	H.G.
12.7	99.3	137.6	At5g61670	836289	-	Encodes a close homolog of the Cauliflower OR (Orange) protein. The function of OR is to induce the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation. Both proteins contain a Cysteine-rich zinc finger domain that is highly specific to DnaJ-like molecular chaperons.	O.I.	C.G.	H.G.
12.7	99.3	54.4	At5g59750	836096	riboflavin biosynthesis protein, putative	F:3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity;P:riboflavin biosynthetic process;C:chloroplast;BOFAP	O.I.	C.G.	H.G.

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GSM ID	GSM184151
Assay name	ATR1_OE_rep2
GSE experiment	GSE7570: ATR1_like_Clade_OE_and_miR

Microarray experiments to specifically-expressed genes

GSM ID GSM184151 Assay name ATR1_OE_rep2 GSE experiment GSE7570: ATR1_like_Clade_OE_and_miR

GSM ID GSM184151

Assay name ATR1_OE_rep2

GSE experiment GSE7570: ATR1_like_Clade_OE_and_miR