Microarray experiments to specifically-expressed genes

GSM ID GSM183515
Assay name ATR1_OE_rep1
GSE experiment GSE7570: ATR1_like_Clade_OE_and_miR

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
359.0100.073.5At1g12030837755unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
257.1100.0222.1At5g60890836210MYB34 (MYB DOMAIN PROTEIN 34)Myb-like transcription factor that modulates expression of ASA1, a key point of control in the tryptophan pathway; mutant has deregulated expression of ASA1 in dominant allele. Loss of function allele suggests ATR1 also functions at a control point for regulating indole glucosinolate homeostasis.O.I.C.G.H.G.
199.2100.0234.3At5g26220832691ChaC-like family proteinF:molecular_function unknown;P:response to lead ion, response to cadmium ion;C:cellular_component unknown;BMOFPO.I.C.G.H.G.
93.099.9182.3At4g14680827118APS3ATP sulfurylaseO.I.C.G.H.G.
67.299.8192.1At2g22330816765CYP79B3Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.O.I.C.G.H.G.
47.099.8283.2At4g39940830153AKN2 (APS-kinase 2)adenosine-5'-phosphosulfate-kinase (akn2) mRNA, completeO.I.C.G.H.G.
46.699.891.3At5g01500831861mitochondrial substrate carrier family proteinencodes an ATP/ADP carrier that is located to the thylakoid membrane involved in providing ATP during thylakoid biogenesis and turnoverO.I.C.G.H.G.
42.799.8141.5At5g48850834943ATSDI1 (SULPHUR DEFICIENCY-INDUCED 1)homologous to the wheat sulphate deficiency-induced gene sdi1. Expression in root and leaf is induced by sulfur starvation. Knockout mutants retained higher root and leaf sulfate concentrations, indicating a role in regulation of stored sulfate pools.O.I.C.G.H.G.
38.899.8119.8At1g36370840543SHM7 (serine hydroxymethyltransferase 7)Encodes a putative serine hydroxymethyltransferase.O.I.C.G.H.G.
37.599.7254.8At5g17990831666TRP1 (tryptophan biosynthesis 1)Encodes the tryptophan biosynthetic enzyme phosphoribosylanthranilate transferase (PAT1, called trpD in bacteria). Converts anthranilate and phosphoribosylpyrophosphate into phosphoribosylanthranilate and inorganic pyrophosphate.O.I.C.G.H.G.
31.899.7160.2At3g23570821936dienelactone hydrolase family proteinF:hydrolase activity;P:response to salt stress;C:cellular_component unknown;BFPOMAO.I.C.G.H.G.
31.099.773.8At5g24760832545alcohol dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:chloroplast;BOPFMAVO.I.C.G.H.G. transcription factor family proteinEncodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP61. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.O.I.C.G.H.G.
23.599.6183.6At5g63980836519SAL1Encodes a bifunctional protein that has 3'(2'),5'-bisphosphate nucleotidase and inositol polyphosphate 1-phosphatase activities and rescues sulfur assimilation mutants in yeast. It is involved in the response to cold, drought (negative regulator of drought tolerance), and ABA. Mutants in this gene exhibit enhanced induction of stress genes in response to cold, ABA, salt and dehydration due to higher accumulation of the second messenger, inositol (1,4,5)- triphosphate (IP(3)). Involved in degradation of small mRNAs. Mutants also affect the accumulation of miRNA target cleavage products. Regulates light-dependent repression of hypocotyl elongation and flowering time via its 3'(2'),5'-bisphosphate nucleotidase activity.O.I.C.G.H.G.
22.599.6210.0At2g04400814980indole-3-glycerol phosphate synthase (IGPS)F:indole-3-glycerol-phosphate synthase activity;P:tryptophan biosynthetic process;C:chloroplast;BOAFPO.I.C.G.H.G.
19.699.624.5At1g80080844348TMM (TOO MANY MOUTHS)Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development.O.I.C.G.H.G.
19.299.653.8At3g49580824120LSU1 (RESPONSE TO LOW SULFUR 1)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
17.199.5165.1At5g05730830457ASA1 (ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1)ASA1 encodes the alpha subunit of anthranilate synthase, which catalyzes the rate-limiting step of tryptophan synthesis. ASA1 is induced by ethylene, and forms a link between ethylene signalling and auxin synthesis in roots.O.I.C.G.H.G.
16.799.599.4At2g01420814670PIN4 (PIN-FORMED 4)Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452).O.I.C.G.H.G.
16.299.5158.2At4g39950830154CYP79B2Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.O.I.C.G.H.G.
16.099.560.6At5g47870834838unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOO.I.C.G.H.G.
15.899.5232.6At5g48490834905protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
15.899.566.7At2g44460819053BGLU28 (BETA GLUCOSIDASE 28)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:membrane;BOPMFAO.I.C.G.H.G.
15.899.525.2At5g55570835651unknown proteinF:unknown;P:unknown;C:chloroplast;PMO.I.C.G.H.G.
15.799.5146.1At2g40610818656ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
15.799.592.6At1g70940843432PIN3 (PIN-FORMED 3)A regulator of auxin efflux and involved in differential growth. PIN3 is expressed in gravity-sensing tissues, with PIN3 protein accumulating predominantly at the lateral cell surface. PIN3 localizes to the plasma membrane and to vesicles. In roots, PIN3 is expressed without pronounced polarity in tiers two and three of the columella cells, at the basal side of vascular cells, and to the lateral side of pericycle cells of the elongation zone. PIN3 overexpression inhibits root cell growth. Protein phosphorylation plays a role in PIN3 trafficking to the plasma membrane.O.I.C.G.H.G.
15.799.532.5At3g05400819704sugar transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOAO.I.C.G.H.G.
15.799.525.3At3g12520820431SULTR4Encodes a sulfate transporter that in induced under sulfate limitation.O.I.C.G.H.G.
15.399.427.0At5g57590835863BIO1 (biotin auxotroph 1)Mutant complemented by E coli Bio A gene encoding 7,8-diaminopelargonic acid aminotransferase.O.I.C.G.H.G.
15.199.421.2At5g18290831947SIP1Belongs to a family of plant aquaporins.Similar to yeast and radish aquaporins. Located on ERO.I.C.G.H.G.
15.099.489.7At1g12250837778thylakoid lumenal protein-relatedF:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOAPVO.I.C.G.H.G.
15.099.450.1At3g58010824970unknown proteinF:unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast, plastoglobule;PFOO.I.C.G.H.G.
14.899.451.8At4g32770829413VTE1 (VITAMIN E DEFICIENT 1)Tocopherol cyclase involved in tocopherol (vitamin E)synthesis. VTE1 over-expressing plants have increased tocopherol indicating VTE1 is a major limiting factor in tocopherol synthesis. Mutants defective in this gene accumulate high amounts of zeaxanthin in conditions of high light or low temperature. Plays a role in the adaptation to low temperature stress, notably phloem loading.O.I.C.G.H.G.
14.899.421.1At2g29300817479tropinone reductase, putative / tropine dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
14.599.452.8At4g03400827938DFL2 (DWARF IN LIGHT 2)Encodes a GH3-related gene involved in red light-specific hypocotyl elongation. Analysis of sense and antisense transgenic plants suggests that DFL2 is located downstream of red light signal transduction and determines the degree of hypocotyl elongation.O.I.C.G.H.G.
14.499.4101.3At1g01790837332KEA1 (K EFFLUX ANTIPORTER 1)K efflux antiporter KEA1O.I.C.G.H.G.
14.199.4271.5At4g27070828815TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2)Tryptophan synthase beta. Expressed at low levels in all tissues.O.I.C.G.H.G.
14.099.436.3At4g33000829437CBL10 (CALCINEURIN B-LIKE 10)Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis.O.I.C.G.H.G.
13.899.431.4At2g38780818460unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBMO.I.C.G.H.G.
13.599.416.6At1g77990844134AST56cDNA encoding a sulfate transporter.O.I.C.G.H.G.
13.499.440.0At1g70610843398ATTAP1member of TAP subfamilyO.I.C.G.H.G.
13.299.460.2At1g62250842522unknown proteinF:unknown;P:unknown;C:chloroplast;PO.I.C.G.H.G.
13.199.4135.9At2g14750815963APK (APS KINASE)Encodes a functional APS kinaseO.I.C.G.H.G.
12.999.397.6At5g44720834501molybdenum cofactor sulfurase family proteinF:molybdenum ion binding, Mo-molybdopterin cofactor sulfurase activity, pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:cellular_component unknown;BMFOPAO.I.C.G.H.G.
12.899.3127.6At5g24420832513glucosamine/galactosamine-6-phosphate isomerase-relatedF:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFPO.I.C.G.H.G.
12.699.338.5At1g64150842719unknown proteinF:unknown;P:unknown;C:chloroplast, membrane;BOMFPAO.I.C.G.H.G.
12.499.3118.8At2g46650819277CB5-C (CYTOCHROME B5 ISOFORM C)member of Cytochromes b5O.I.C.G.H.G.
12.499.332.7At1g76110843943high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:intracellular, nucleus;MOFPO.I.C.G.H.G.
12.399.3119.0At4g37760829932SQE3 (squalene epoxidase 3)F:squalene monooxygenase activity;P:response to jasmonic acid stimulus, sterol biosynthetic process, response to wounding;C:endomembrane system, integral to membrane;BOFMPAO.I.C.G.H.G.
12.299.378.0At3g47295823883unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
11.899.348.9At5g45040834535cytochrome c6 (ATC6)F:electron carrier activity, iron ion binding, heme binding;P:unknown;C:unknown;BOPO.I.C.G.H.G.
11.699.3184.3At5g65730836702xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:response to water deprivation;C:endomembrane system, cell wall, apoplast;PFBOO.I.C.G.H.G.
11.599.317.0At3g06100819783NIP7F:water channel activity;P:transport;C:membrane;BPMOFAVO.I.C.G.H.G.
11.499.375.8At3g59760825145OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C)Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasCO.I.C.G.H.G.
11.399.350.0At1g12860837843SCRM2 (SCREAM 2)Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation.O.I.C.G.H.G. proteinF:unknown;P:unknown;C:apoplast, chloroplast stroma, chloroplast, chloroplast envelope;POBO.I.C.G.H.G. (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2)F:antiporter activity, triose-phosphate transmembrane transporter activity;P:triose phosphate transport, transport;C:integral to membrane, chloroplast, membrane;PMFOBAO.I.C.G.H.G.
10.999.222.6At1g69160843247unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMVO.I.C.G.H.G.
10.799.2103.8At4g25700828675BETA-OHASE 1 (BETA-HYDROXYLASE 1)Converts beta-carotene to zeaxanthin via cryptoxanthin.O.I.C.G.H.G.
10.699.2326.1At3g22890821861APS1 (ATP SULFURYLASE 1)encodes ATP sulfurylase, the first enzyme in the sulfate assimilation pathway of Arabidopsis.O.I.C.G.H.G.
10.599.2180.4At5g48180834871NSP5 (NITRILE SPECIFIER PROTEIN 5)Encodes a nitrile-specifier protein NSP5. NSP5 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.O.I.C.G.H.G.
10.499.210.9At2g45870819195unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;BFPOO.I.C.G.H.G.
10.299.2197.4At1g75280843865isoflavone reductase, putativeisoflavone reductase, putative, identical to SP:P52577 Isoflavone reductase homolog P3 (EC 1.3.1.-) {Arabidopsis thaliana}; contains Pfam profile PF02716: isoflavone reductase. Involved in response to oxidative stress.O.I.C.G.H.G.
10.299.2174.1At4g35250829678vestitone reductase-relatedF:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:chloroplast;BOPFMAO.I.C.G.H.G.
9.999.1113.5At4g08870826458arginase, putativeEncodes one of the two arginase in the genome. Gene expression is enhanced by methyl jasmonate treatment.O.I.C.G.H.G.
9.999.16.0At2g37030818278auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POO.I.C.G.H.G.
9.899.1107.2At1g32220840114binding / catalytic/ coenzyme bindingF:coenzyme binding, binding, catalytic activity;P:response to oxidative stress;C:thylakoid, chloroplast, plastoglobule;BOFPMAO.I.C.G.H.G.
9.899.177.3At5g02760831234protein phosphatase 2C family protein / PP2C family proteinF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;PMOFBAVO.I.C.G.H.G.
9.899.176.6At2g40300818622ATFER4 (ferritin 4)Encodes FERRITIN 4, AtFER4. Ferritins are a class of 24-mer multi-meric proteins found in all kingdoms of life. Function as the main iron store in mammals. Evidence suggests that Arabidopsis ferritins are essential to protect cells against oxidative damage, but they do not constitute the major iron pool.O.I.C.G.H.G.
9.799.1105.6At2g20610816585SUR1 (SUPERROOT 1)Confers auxin overproduction. Mutants have an over-proliferation of lateral roots. Encodes a C-S lyase involved in converting S-alkylthiohydroximate to thiohydroximate in glucosinolate biosynthesis.O.I.C.G.H.G.
9.799.182.8At3g28270822453-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMPOAFVO.I.C.G.H.G.
9.799.171.6At1g12520837808ATCCS (COPPER CHAPERONE FOR SOD1)Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta.O.I.C.G.H.G.
9.699.1132.5At1g48850841307EMB1144 (embryo defective 1144)F:chorismate synthase activity;P:embryonic development ending in seed dormancy, aromatic amino acid family biosynthetic process;C:nucleolus, chloroplast;OBAFPMO.I.C.G.H.G.
9.699.145.6At5g52570835334BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)Converts β-carotene to zeaxanthin via cryptoxanthin.O.I.C.G.H.G.
9.599.165.5At4g39970830158haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast, chloroplast stroma, chloroplast envelope;BOPMFAVO.I.C.G.H.G.
9.499.1217.1At5g67030836838ABA1 (ABA DEFICIENT 1)Encodes a single copy zeaxanthin epoxidase gene that functions in first step of the biosynthesis of the abiotic stress hormone abscisic acid (ABA). Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do.O.I.C.G.H.G.
9.499.159.7At1g52510841682hydrolase, alpha/beta fold family proteinF:hydrolase activity, catalytic activity;P:unknown;C:chloroplast, chloroplast envelope;BOPMFAO.I.C.G.H.G.
9.399.151.5At4g12980826910auxin-responsive protein, putativeF:unknown;P:multicellular organismal development;C:membrane;PMFOBO.I.C.G.H.G.
9.399.140.9At1g62800842579ASP4 (ASPARTATE AMINOTRANSFERASE 4)Encodes aspartate aminotransferase (Asp4).O.I.C.G.H.G. / catalytic/ transcription repressorF:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:chloroplast, vacuole;BOPFAMO.I.C.G.H.G. (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1)Contains a J-domain at the C-terminus which is similar to the J-domain of auxilin, a clathrin-uncoating factor in cow, yeast and worm. Arabidopsis contains 6 other proteins similar to auxilin. Expressed in leaves and stems, but not in roots. Localized in the cytoplasm. Required for the chloroplast accumulation response, but not for the avoidance response. No molecular function known.O.I.C.G.H.G.
9.099.1124.0At2g39470818532PPL2 (PsbP-like protein 2)F:calcium ion binding;P:photosynthesis;C:in 6 components;PBOO.I.C.G.H.G.
8.999.036.8At1g10700837613ribose-phosphate pyrophosphokinase 3 / phosphoribosyl diphosphate synthetase 3 (PRS3)F:magnesium ion binding, ribose phosphate diphosphokinase activity;P:cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process;C:chloroplast;BOMFAPVO.I.C.G.H.G.
8.999.017.7At4g38950830050kinesin motor family proteinF:microtubule motor activity, ATP binding;P:microtubule-based process, microtubule-based movement;C:microtubule associated complex;MOPFO.I.C.G.H.G.
8.899.0300.2At4g31500829277CYP83B1 (CYTOCHROME P450 MONOOXYGENASE 83B1)Encodes an oxime-metabolizing enzyme in the biosynthetic pathway of glucosinolates. Is required for phytochrome signal transduction in red light. Mutation confers auxin overproduction.O.I.C.G.H.G.
8.899.036.5At1g77060844041mutase family proteinF:catalytic activity;P:metabolic process;C:chloroplast, chloroplast stroma;OBFPAMO.I.C.G.H.G.
8.799.0228.0At2g24270816962ALDH11A3Encodes a protein with non-phosphorylating NADP-dependent glyceraldehyde-3-phosphate dehydrogenase activity. The activity of the enzyme was determined from leaf extracts; the enzyme has not been purified to confirm activity.O.I.C.G.H.G.
8.799.031.7At4g14560827103IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE)auxin (indole-3-acetic acid) induced gene (IAA1) encoding a short-lived nuclear-localized transcriptional regulator protein.O.I.C.G.H.G.
8.799.017.0At3g50240824186KICP-02Encodes a kinesin-related protein.O.I.C.G.H.G.
8.699.0115.0At2g29650817515PHT4Encodes an inorganic phosphate transporter (PHT4;1) that is localized to the thylakoid membrane.O.I.C.G.H.G.
8.699.044.1At4g37310829886CYP81H1member of CYP81HO.I.C.G.H.G.
8.699.018.0At2g32640817824unknown proteinF:unknown;P:unknown;C:chloroplast;BPOO.I.C.G.H.G.

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