Microarray experiments to specifically-expressed genes

GSM ID GSM183513
Assay name MYB29_OE_rep1
GSE experiment GSE7570: ATR1_like_Clade_OE_and_miR

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
147.999.9330.2At4g03050828104AOP3Transcriptional silent in leaf tissues of ecotype Col. The transcribed allele in ecotype Ler encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of hydroxyalkyl glucosinolates among different ecotypes of Arabidopsis.O.I.C.G.H.G.
88.099.9155.7At5g26220832691ChaC-like family proteinF:molecular_function unknown;P:response to lead ion, response to cadmium ion;C:cellular_component unknown;BMOFPO.I.C.G.H.G.
83.099.966.0At5g07690830662ATMYB29 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 29)Encodes a putative transcription factor (MYB29).O.I.C.G.H.G.
80.599.997.7At3g03190821227ATGSTF11 (GLUTATHIONE S-TRANSFERASE F11)Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
62.399.8225.9At2g43100818912aconitase C-terminal domain-containing proteinF:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOAFPMO.I.C.G.H.G.
40.499.858.2At1g65860842897FMO GS-OX1 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1)belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolatesO.I.C.G.H.G.
36.799.723.5At1g12030837755unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
35.399.7146.0At2g31790817736UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
30.699.742.1At4g30720829195electron carrier/ oxidoreductaseF:electron carrier activity, oxidoreductase activity;P:unknown;C:chloroplast;BOAPFO.I.C.G.H.G.
29.199.7169.3At3g58990825068aconitase C-terminal domain-containing proteinF:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOFAPMO.I.C.G.H.G.
28.899.765.8At5g16715831533EMB2247 (embryo defective 2247)F:valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:chloroplast stroma, chloroplast;OBMAFPO.I.C.G.H.G.
27.099.761.6At5g10690830933pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBAO.I.C.G.H.G.
26.299.770.5At3g02830821230ZFN1 (ZINC FINGER PROTEIN 1)Encodes a zinc finger protein.O.I.C.G.H.G.
25.499.6109.2At4g12030826811bile acid:sodium symporter family proteinF:transporter activity, bile acid:sodium symporter activity;P:sodium ion transport;C:membrane;OBMPAO.I.C.G.H.G.
23.799.6165.3At2g20610816585SUR1 (SUPERROOT 1)Confers auxin overproduction. Mutants have an over-proliferation of lateral roots. Encodes a C-S lyase involved in converting S-alkylthiohydroximate to thiohydroximate in glucosinolate biosynthesis.O.I.C.G.H.G.
23.499.654.9At3g22740821845HMT3homocysteine S-methyltransferase (HMT3)O.I.C.G.H.G.
23.199.629.4At2g32640817824unknown proteinF:unknown;P:unknown;C:chloroplast;BPOO.I.C.G.H.G.
22.699.630.1At5g55570835651unknown proteinF:unknown;P:unknown;C:chloroplast;PMO.I.C.G.H.G.
22.299.689.1At4g14680827118APS3ATP sulfurylaseO.I.C.G.H.G.
21.299.643.1At3g04340819589emb2458 (embryo defective 2458)F:nucleoside-triphosphatase activity, ATPase activity, metalloendopeptidase activity, nucleotide binding, ATP binding;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAVO.I.C.G.H.G.
21.199.616.0At4g34650829617SQS2 (SQUALENE SYNTHASE 2)Encodes a protein with similarity to squalene synthase which catalyzes the first committed step in sterol biosynthesis. To date no experimental evidence exists that SQS2 functions as a squalene synthase and some experiments indicate it does not have this function.O.I.C.G.H.G.
20.899.6153.8At2g46650819277CB5-C (CYTOCHROME B5 ISOFORM C)member of Cytochromes b5O.I.C.G.H.G.
20.599.642.1At3g13180820508NOL1/NOP2/sun family protein / antitermination NusB domain-containing proteinF:RNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;BOMFAPO.I.C.G.H.G.
20.299.638.0At2g38780818460unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBMO.I.C.G.H.G.
19.899.666.1At1g12860837843SCRM2 (SCREAM 2)Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation.O.I.C.G.H.G.
19.499.664.5At1g30520839932AAE14 (Acyl-Activating Enzyme 14)Encodes a chloroplast O-succinylbenzoyl-CoA ligase. Involved in phylloquinone biosynthesis. Knock mutant is seedling lethal.O.I.C.G.H.G.
19.399.636.4At4g34830829635-F:unknown;P:unknown;C:chloroplast;POMFBAO.I.C.G.H.G.
19.099.56.3At2g42380818839bZIP transcription factor family proteinEncodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP61. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.O.I.C.G.H.G.
18.599.5166.5At1g21440838742mutase family proteinF:isocitrate lyase activity, catalytic activity;P:metabolic process;C:chloroplast, chloroplast stroma;OBFPAMO.I.C.G.H.G.
18.599.529.8At5g57590835863BIO1 (biotin auxotroph 1)Mutant complemented by E coli Bio A gene encoding 7,8-diaminopelargonic acid aminotransferase.O.I.C.G.H.G.
18.399.565.4At1g79560844294FTSH12 (FTSH PROTEASE 12)encodes an FtsH protease that is localized to the chloroplastO.I.C.G.H.G.
18.199.539.5At1g76110843943high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:intracellular, nucleus;MOFPO.I.C.G.H.G.
17.699.570.2At1g15290838097bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MBOFPAVO.I.C.G.H.G.
17.299.524.9At3g63510825526FAD binding / catalytic/ tRNA dihydrouridine synthaseF:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
16.999.587.5At1g18590838440SOT17 (SULFOTRANSFERASE 17)encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates.O.I.C.G.H.G.
16.799.5164.2At2g47940819406DEGP2Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product.O.I.C.G.H.G.
16.799.540.8At5g64050836526ERS (GLUTAMATE TRNA SYNTHETASE)Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.O.I.C.G.H.G.
16.799.521.0At5g55580835652mitochondrial transcription termination factor family protein / mTERF family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMOFVBO.I.C.G.H.G.
16.599.5168.0At4g39940830153AKN2 (APS-kinase 2)adenosine-5'-phosphosulfate-kinase (akn2) mRNA, completeO.I.C.G.H.G.
16.599.537.6At4g23940828494FtsH protease, putativeF:in 7 functions;P:proteolysis;C:chloroplast;OBMFPAVO.I.C.G.H.G.
16.199.512.5At5g60880836209unknown proteinF:unknown;P:unknown;C:cellular_component unknown;OPMFO.I.C.G.H.G.
16.099.518.7At5g37130833685bindingF:binding;P:biological_process unknown;C:apoplast;OBAMFPO.I.C.G.H.G.
15.799.543.0At1g64150842719unknown proteinF:unknown;P:unknown;C:chloroplast, membrane;BOMFPAO.I.C.G.H.G.
15.699.515.8At2g39250818510SNZ (SCHNARCHZAPFEN)Encodes a AP2 domain transcription factor that can repress flowering. SNZ and its paralogous gene, SCHLAFMUTZE (SMZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.O.I.C.G.H.G.
15.399.455.5At5g66470836779GTP binding / RNA bindingF:RNA binding, GTP binding;P:unknown;C:chloroplast;BOMAPFO.I.C.G.H.G.
15.399.452.4At5g01500831861mitochondrial substrate carrier family proteinencodes an ATP/ADP carrier that is located to the thylakoid membrane involved in providing ATP during thylakoid biogenesis and turnoverO.I.C.G.H.G.
15.399.432.4At4g20130827759PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14)F:unknown;P:unknown;C:plastid chromosome, chloroplast, nucleoid;PFMOO.I.C.G.H.G.
15.399.425.0At3g12520820431SULTR4Encodes a sulfate transporter that in induced under sulfate limitation.O.I.C.G.H.G.
15.399.421.6At1g80080844348TMM (TOO MANY MOUTHS)Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development.O.I.C.G.H.G.
15.099.413.6At5g53210835402SPCH (SPEECHLESS)Encodes a basic helix-loop-helix (bHLH) transcription factor that is necessary and sufficient for the asymmetric divisions that establish the stomatal lineage in Arabidopsis thaliana. Expression of SPCH in young epidermal cells allows these cells to make asymmetric divisions. SPCH is a substrate of a kinase MPK3 and MPK6.O.I.C.G.H.G.
14.999.483.6At5g48850834943ATSDI1 (SULPHUR DEFICIENCY-INDUCED 1)homologous to the wheat sulphate deficiency-induced gene sdi1. Expression in root and leaf is induced by sulfur starvation. Knockout mutants retained higher root and leaf sulfate concentrations, indicating a role in regulation of stored sulfate pools.O.I.C.G.H.G.
14.799.447.1At1g77060844041mutase family proteinF:catalytic activity;P:metabolic process;C:chloroplast, chloroplast stroma;OBFPAMO.I.C.G.H.G.
14.699.432.6At1g16400838210CYP79F2Encodes cytochrome P450 CYP79F2.O.I.C.G.H.G.
14.499.481.2At5g10180830882AST68Encodes a low-affinity sulfate transporter expressed in the root cap and central cylinder, where it is induced by sulfur starvation. Expression in the shoot vascular system is not induced by sulfur starvation.O.I.C.G.H.G.
14.499.460.8At1g72810843612threonine synthase, putativeF:pyridoxal phosphate binding, catalytic activity, threonine synthase activity;P:amino acid metabolic process, threonine biosynthetic process, metabolic process;C:chloroplast;BOAMPFO.I.C.G.H.G.
14.499.442.6At3g49260824087iqd21 (IQ-domain 21)F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOFBO.I.C.G.H.G.
14.399.4157.0At1g10370837576ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9)F:glutathione transferase activity;P:response to water deprivation, toxin catabolic process;C:chloroplast, cytoplasm;BPOMFO.I.C.G.H.G.
14.399.415.4At5g44660834495unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBOFPVO.I.C.G.H.G.
14.299.4177.4At3g49680824130BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.O.I.C.G.H.G.
14.299.440.7At1g48650841287helicase domain-containing proteinF:in 6 functions;P:unknown;C:intracellular;BMOFPVAO.I.C.G.H.G.
14.199.456.4At1g62560842553FMO GS-OX3 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 3)belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolatesO.I.C.G.H.G.
14.099.430.5At5g57960835907GTP-binding family proteinF:GTP binding;P:unknown;C:chloroplast;BOMAPFO.I.C.G.H.G.
13.899.456.9At3g62910825466APG3 (ALBINO AND PALE GREEN)Isolated in a screen for chloroplast development mutants. Pale green, albino seedlings arrest early in seedling development.O.I.C.G.H.G.
13.699.437.5At3g49140824075-F:unknown;P:unknown;C:unknown;PBMOFVAO.I.C.G.H.G.
13.499.4278.8At4g13770827011CYP83A1 (CYTOCHROME P450 83A1)Encodes a cytochrome p450 enzyme that catalyzes the initial conversion of aldoximes to thiohydroximates in the synthesis of glucosinolates not derived from tryptophan. Also has a role in auxin homeostasis.O.I.C.G.H.G.
13.299.437.6At3g03710821181RIF10 (resistant to inhibition with FSM 10)Mutants impaired in the expression of this gene have been selected through their resistance to fosmidomycin, a strong inhibitor of DXR, an enzyme of the methylerythritol-dependent IPP biosynthesis pathway. The pathway enzymes were upregulated in the mutant seedlings.O.I.C.G.H.G.
13.299.49.8At2g39690818552unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBMOO.I.C.G.H.G.
13.299.47.6At3g15550820794unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
13.199.430.4At3g13490820551OVA5 (OVULE ABORTION 5)Encodes a dual targeted lysyl-tRNA ligase that is found both in the mitochondrion and the chloroplast. Plants mutated in this gene exhibit an ovule abortion phenotype.O.I.C.G.H.G.
13.099.460.5At2g44460819053BGLU28 (BETA GLUCOSIDASE 28)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:membrane;BOPMFAO.I.C.G.H.G.
12.899.36.5At5g57600--O.I.C.G.H.G.
12.799.336.9At3g10160820179DFC (DHFS-FPGS HOMOLOG C)Encodes a protein with tetrahydrofolylpolyglutamate synthase activity that is located in the mitochondrial matrix.O.I.C.G.H.G.
12.699.341.8At4g04850825822KEA3member of Putative potassium transporter familyO.I.C.G.H.G.
12.699.341.0At3g19000821433oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:biological_process unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
12.599.3206.5At5g48490834905protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
12.499.348.5At1g11790837725ADT1 (arogenate dehydratase 1)Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identified in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].O.I.C.G.H.G.
12.299.3128.1At3g57050824872CBL (cystathionine beta-lyase)Encodes second enzyme in the methionine biosynthetic pathwayO.I.C.G.H.G.
12.199.394.9At3g54500824615-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBO.I.C.G.H.G.
12.099.3290.2At3g19710821508BCAT4 (BRANCHED-CHAIN AMINOTRANSFERASE4)Belongs to the branched-chain amino acid aminotransferase gene family. Encodes a methionine-oxo-acid transaminase. Involved in the methionine chain elongation pathway that leads to the ultimate biosynthesis of methionine-derived glucosinolates.O.I.C.G.H.G.
12.099.3149.0At1g74090843749SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates.O.I.C.G.H.G.
11.999.328.6At4g37080829862unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBFO.I.C.G.H.G.
11.999.324.7At1g16060838176ovule development protein, putativeF:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBVO.I.C.G.H.G.
11.899.3129.9At5g63980836519SAL1Encodes a bifunctional protein that has 3'(2'),5'-bisphosphate nucleotidase and inositol polyphosphate 1-phosphatase activities and rescues sulfur assimilation mutants in yeast. It is involved in the response to cold, drought (negative regulator of drought tolerance), and ABA. Mutants in this gene exhibit enhanced induction of stress genes in response to cold, ABA, salt and dehydration due to higher accumulation of the second messenger, inositol (1,4,5)- triphosphate (IP(3)). Involved in degradation of small mRNAs. Mutants also affect the accumulation of miRNA target cleavage products. Regulates light-dependent repression of hypocotyl elongation and flowering time via its 3'(2'),5'-bisphosphate nucleotidase activity.O.I.C.G.H.G.
11.899.376.5At2g21280816667SULAA nuclear-encoded, plastid-targeted protein (AtSulA) whose overexpression causes severe yet stochastic plastid (shown in chloroplasts and leucoplasts) division defects. The protein does not appear to interact with either AtFtsZ proteins when studied in a yeast two-hybrid system.O.I.C.G.H.G.
11.899.339.4At3g16290820876EMB2083 (embryo defective 2083)F:in 8 functions;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAVO.I.C.G.H.G.
11.799.3121.7At3g02020821287AK3 (ASPARTATE KINASE 3)encodes a monofunctional aspartate kinaseO.I.C.G.H.G.
11.799.3104.7At3g14930820722HEME1F:uroporphyrinogen decarboxylase activity;P:porphyrin biosynthetic process;C:chloroplast stroma, chloroplast;OBMFAPO.I.C.G.H.G.
11.799.324.6At2g45270819135glycoprotease M22 family proteinF:endopeptidase activity, metalloendopeptidase activity, zinc ion binding;P:proteolysis;C:unknown;OBMFAPO.I.C.G.H.G.
11.599.3141.2At1g08520837374CHLDF:magnesium chelatase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:chlorophyll biosynthetic process;C:magnesium chelatase complex, chloroplast;MOBFPVAO.I.C.G.H.G.
11.499.325.5At3g03770821164leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
11.499.320.0At4g38950830050kinesin motor family proteinF:microtubule motor activity, ATP binding;P:microtubule-based process, microtubule-based movement;C:microtubule associated complex;MOPFO.I.C.G.H.G.
11.499.317.3At1g60990842391aminomethyltransferaseF:aminomethyltransferase activity;P:glycine catabolic process, glycine decarboxylation via glycine cleavage system;C:chloroplast;OBMAFPO.I.C.G.H.G.
11.399.3116.3At5g64940836618ATATH13Encodes a member of ATH subfamily of ATP-binding cassette (ABC) proteins.O.I.C.G.H.G.
11.399.333.4At1g11870837734SRS (SERYL-TRNA SYNTHETASE)Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.O.I.C.G.H.G.
11.299.2102.1At5g54390835527AHL (ARABIDOPSIS HAL2-LIKE)Encodes a 3'-phosphoadenosine-5'-phosphate (PAP) phosphatase that is sensitive to physiological concentrations of Na+. It does not also act as inositol polyphosphate 1-phosphatases, which other members of the HAL2-like family do. It is proposed that AHL acts in concert with sulphotransferases to prevent both the toxicity of PAP on RNA processing enzymes as well as the product inhibition of PAP on sulphate conjugation.O.I.C.G.H.G.
11.299.290.9At5g44720834501molybdenum cofactor sulfurase family proteinF:molybdenum ion binding, Mo-molybdopterin cofactor sulfurase activity, pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:cellular_component unknown;BMFOPAO.I.C.G.H.G.
11.299.277.1At1g12520837808ATCCS (COPPER CHAPERONE FOR SOD1)Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta.O.I.C.G.H.G.
11.199.278.5At1g60550842350ECHID (ENOYL-COA HYDRATASE/ISOMERASE D)F:naphthoate synthase activity, catalytic activity;P:vitamin K biosynthetic process, metabolic process, menaquinone biosynthetic process;C:peroxisome;BOMFPAO.I.C.G.H.G.
11.199.248.4At1g56050842056GTP-binding protein-relatedF:GTP binding;P:biological_process unknown;C:chloroplast, chloroplast stroma;OBMFAPO.I.C.G.H.G.
11.099.226.5At1g50840841506POLGAMMA2 (polymerase gamma 2)DNA Polymerase gamma2. Dual targeting to mitochondria and plastids due to alternative translation initiation.O.I.C.G.H.G.



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