Microarray experiments to specifically-expressed genes

GSM ID GSM183512
Assay name MYB76_OE_rep2
GSE experiment GSE7570: ATR1_like_Clade_OE_and_miR

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
213.2100.090.0At5g07700830663MYB76 (myb domain protein 76)Encodes a putative transcription factor (MYB76).O.I.C.G.H.G.
181.7100.0365.9At4g03050828104AOP3Transcriptional silent in leaf tissues of ecotype Col. The transcribed allele in ecotype Ler encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of hydroxyalkyl glucosinolates among different ecotypes of Arabidopsis.O.I.C.G.H.G.
127.699.9187.5At5g26220832691ChaC-like family proteinF:molecular_function unknown;P:response to lead ion, response to cadmium ion;C:cellular_component unknown;BMOFPO.I.C.G.H.G.
80.599.997.7At3g03190821227ATGSTF11 (GLUTATHIONE S-TRANSFERASE F11)Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
75.599.979.6At1g65860842897FMO GS-OX1 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1)belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolatesO.I.C.G.H.G.
75.399.9248.4At2g43100818912aconitase C-terminal domain-containing proteinF:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOAFPMO.I.C.G.H.G.
67.899.993.6At3g22740821845HMT3homocysteine S-methyltransferase (HMT3)O.I.C.G.H.G.
64.799.8174.4At4g12030826811bile acid:sodium symporter family proteinF:transporter activity, bile acid:sodium symporter activity;P:sodium ion transport;C:membrane;OBMPAO.I.C.G.H.G.
48.799.8218.9At3g58990825068aconitase C-terminal domain-containing proteinF:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOFAPMO.I.C.G.H.G.
44.599.8226.6At2g20610816585SUR1 (SUPERROOT 1)Confers auxin overproduction. Mutants have an over-proliferation of lateral roots. Encodes a C-S lyase involved in converting S-alkylthiohydroximate to thiohydroximate in glucosinolate biosynthesis.O.I.C.G.H.G.
41.199.896.1At1g62560842553FMO GS-OX3 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 3)belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolatesO.I.C.G.H.G.
37.199.7235.7At1g21440838742mutase family proteinF:isocitrate lyase activity, catalytic activity;P:metabolic process;C:chloroplast, chloroplast stroma;OBFPAMO.I.C.G.H.G.
35.399.742.6At1g16060838176ovule development protein, putativeF:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBVO.I.C.G.H.G.
34.399.744.7At4g30720829195electron carrier/ oxidoreductaseF:electron carrier activity, oxidoreductase activity;P:unknown;C:chloroplast;BOAPFO.I.C.G.H.G.
31.099.7187.7At2g46650819277CB5-C (CYTOCHROME B5 ISOFORM C)member of Cytochromes b5O.I.C.G.H.G.
30.999.735.5At3g12520820431SULTR4Encodes a sulfate transporter that in induced under sulfate limitation.O.I.C.G.H.G.
29.599.746.3At1g16400838210CYP79F2Encodes cytochrome P450 CYP79F2.O.I.C.G.H.G.
29.499.790.8At1g31230840011AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I)Encodes a bifunctional aspartate kinase/homoserine dehydrogenase. These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, isoleucine and methionine.O.I.C.G.H.G.
29.399.718.8At4g34650829617SQS2 (SQUALENE SYNTHASE 2)Encodes a protein with similarity to squalene synthase which catalyzes the first committed step in sterol biosynthesis. To date no experimental evidence exists that SQS2 functions as a squalene synthase and some experiments indicate it does not have this function.O.I.C.G.H.G.
26.599.720.0At1g12030837755unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
26.099.7108.3At1g18590838440SOT17 (SULFOTRANSFERASE 17)encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates.O.I.C.G.H.G.
25.999.7125.0At2g31790817736UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
25.399.659.6At5g10690830933pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBAO.I.C.G.H.G.
24.599.660.6At5g16715831533EMB2247 (embryo defective 2247)F:valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:chloroplast stroma, chloroplast;OBMAFPO.I.C.G.H.G.
23.799.6201.8At3g16670820919unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;PO.I.C.G.H.G.
23.699.6172.5At3g02020821287AK3 (ASPARTATE KINASE 3)encodes a monofunctional aspartate kinaseO.I.C.G.H.G.
23.199.6104.0At5g48850834943ATSDI1 (SULPHUR DEFICIENCY-INDUCED 1)homologous to the wheat sulphate deficiency-induced gene sdi1. Expression in root and leaf is induced by sulfur starvation. Knockout mutants retained higher root and leaf sulfate concentrations, indicating a role in regulation of stored sulfate pools.O.I.C.G.H.G.
22.899.640.4At2g38780818460unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBMO.I.C.G.H.G.
22.399.689.2At4g14680827118APS3ATP sulfurylaseO.I.C.G.H.G.
22.099.668.7At1g30520839932AAE14 (Acyl-Activating Enzyme 14)Encodes a chloroplast O-succinylbenzoyl-CoA ligase. Involved in phylloquinone biosynthesis. Knock mutant is seedling lethal.O.I.C.G.H.G.
22.099.628.7At2g32640817824unknown proteinF:unknown;P:unknown;C:chloroplast;BPOO.I.C.G.H.G.
21.999.643.4At1g76110843943high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:intracellular, nucleus;MOFPO.I.C.G.H.G.
21.499.6190.9At4g39940830153AKN2 (APS-kinase 2)adenosine-5'-phosphosulfate-kinase (akn2) mRNA, completeO.I.C.G.H.G.
21.399.621.6At5g37130833685bindingF:binding;P:biological_process unknown;C:apoplast;OBAMFPO.I.C.G.H.G.
21.199.6216.6At3g49680824130BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.O.I.C.G.H.G.
21.099.676.7At2g44460819053BGLU28 (BETA GLUCOSIDASE 28)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:membrane;BOPMFAO.I.C.G.H.G.
20.499.667.1At1g12860837843SCRM2 (SCREAM 2)Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation.O.I.C.G.H.G.
19.399.6166.2At5g63980836519SAL1Encodes a bifunctional protein that has 3'(2'),5'-bisphosphate nucleotidase and inositol polyphosphate 1-phosphatase activities and rescues sulfur assimilation mutants in yeast. It is involved in the response to cold, drought (negative regulator of drought tolerance), and ABA. Mutants in this gene exhibit enhanced induction of stress genes in response to cold, ABA, salt and dehydration due to higher accumulation of the second messenger, inositol (1,4,5)- triphosphate (IP(3)). Involved in degradation of small mRNAs. Mutants also affect the accumulation of miRNA target cleavage products. Regulates light-dependent repression of hypocotyl elongation and flowering time via its 3'(2'),5'-bisphosphate nucleotidase activity.O.I.C.G.H.G.
19.199.6160.1At3g57050824872CBL (cystathionine beta-lyase)Encodes second enzyme in the methionine biosynthetic pathwayO.I.C.G.H.G.
18.399.557.2At5g01500831861mitochondrial substrate carrier family proteinencodes an ATP/ADP carrier that is located to the thylakoid membrane involved in providing ATP during thylakoid biogenesis and turnoverO.I.C.G.H.G.
18.399.539.8At3g13180820508NOL1/NOP2/sun family protein / antitermination NusB domain-containing proteinF:RNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;BOMFAPO.I.C.G.H.G.
18.299.525.7At3g63510825526FAD binding / catalytic/ tRNA dihydrouridine synthaseF:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
17.899.5180.3At1g311808400063-isopropylmalate dehydrogenase, chloroplast, putativeThe AtIMD3 is one out of 3 genes encoding the enzyme 3-isopropylmalate dehydrogenase involved in leucine biosynthesis in Arabidopsis. Its subcellular location has been targeted to plastids.O.I.C.G.H.G.
17.699.5180.3At1g74090843749SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates.O.I.C.G.H.G.
16.699.5152.8At2g14750815963APK (APS KINASE)Encodes a functional APS kinaseO.I.C.G.H.G.
16.599.578.6At3g59780825147-F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPVO.I.C.G.H.G.
16.499.5110.3At3g54500824615-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBO.I.C.G.H.G.
16.499.539.3At4g33000829437CBL10 (CALCINEURIN B-LIKE 10)Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis.O.I.C.G.H.G.
16.399.567.5At1g15290838097bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MBOFPAVO.I.C.G.H.G.
15.299.4117.9At5g07460830637PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)ubiquitous enzyme that repairs oxidatively damaged proteins. Methionine sulfoxide reductase activity. Mutant lacking reductase activity showed increased protein oxidation, nitration and glycation of specific amino acid residues during darkness.O.I.C.G.H.G.
15.299.422.8At1g602703767579-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
15.199.4156.3At2g47940819406DEGP2Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product.O.I.C.G.H.G.
15.199.453.6At3g02830821230ZFN1 (ZINC FINGER PROTEIN 1)Encodes a zinc finger protein.O.I.C.G.H.G.
15.199.439.5At2g30695817620-F:molecular_function unknown;P:protein folding, protein transport;C:chloroplast stroma, chloroplast;BOPO.I.C.G.H.G.
15.199.432.2At4g34830829635-F:unknown;P:unknown;C:chloroplast;POMFBAO.I.C.G.H.G.
15.099.436.3At3g04340819589emb2458 (embryo defective 2458)F:nucleoside-triphosphatase activity, ATPase activity, metalloendopeptidase activity, nucleotide binding, ATP binding;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAVO.I.C.G.H.G.
14.899.4133.3At5g64940836618ATATH13Encodes a member of ATH subfamily of ATP-binding cassette (ABC) proteins.O.I.C.G.H.G.
14.799.419.7At1g60990842391aminomethyltransferaseF:aminomethyltransferase activity;P:glycine catabolic process, glycine decarboxylation via glycine cleavage system;C:chloroplast;OBMAFPO.I.C.G.H.G.
14.399.423.8At3g56160824782bile acid:sodium symporterF:bile acid:sodium symporter activity;P:sodium ion transport;C:chloroplast, chloroplast envelope;BOMPFAO.I.C.G.H.G.
14.199.437.5At5g64050836526ERS (GLUTAMATE TRNA SYNTHETASE)Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.O.I.C.G.H.G.
14.099.480.0At5g10180830882AST68Encodes a low-affinity sulfate transporter expressed in the root cap and central cylinder, where it is induced by sulfur starvation. Expression in the shoot vascular system is not induced by sulfur starvation.O.I.C.G.H.G.
13.999.440.6At1g64150842719unknown proteinF:unknown;P:unknown;C:chloroplast, membrane;BOMFPAO.I.C.G.H.G.
13.899.445.6At1g77060844041mutase family proteinF:catalytic activity;P:metabolic process;C:chloroplast, chloroplast stroma;OBFPAMO.I.C.G.H.G.
13.899.430.8At4g20130827759PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14)F:unknown;P:unknown;C:plastid chromosome, chloroplast, nucleoid;PFMOO.I.C.G.H.G.
13.699.443.5At4g04850825822KEA3member of Putative potassium transporter familyO.I.C.G.H.G.
13.599.441.2At1g14030837964ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putativeF:[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity;P:unknown;C:chloroplast, chloroplast stroma;MPFOO.I.C.G.H.G.
13.499.449.0At1g62800842579ASP4 (ASPARTATE AMINOTRANSFERASE 4)Encodes aspartate aminotransferase (Asp4).O.I.C.G.H.G.
13.199.451.6At3g60370825208immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinEncodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx. Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined.O.I.C.G.H.G.
12.999.3109.9At3g14930820722HEME1F:uroporphyrinogen decarboxylase activity;P:porphyrin biosynthetic process;C:chloroplast stroma, chloroplast;OBMFAPO.I.C.G.H.G.
12.999.355.1At3g62910825466APG3 (ALBINO AND PALE GREEN)Isolated in a screen for chloroplast development mutants. Pale green, albino seedlings arrest early in seedling development.O.I.C.G.H.G.
12.899.359.7At3g15520820791peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamaseF:peptidyl-prolyl cis-trans isomerase activity;P:unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOPAO.I.C.G.H.G.
12.599.3279.6At3g05730819742-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
12.599.336.0At3g49140824075-F:unknown;P:unknown;C:unknown;PBMOFVAO.I.C.G.H.G.
12.499.387.8At2g34620818027mitochondrial transcription termination factor-related / mTERF-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;POMO.I.C.G.H.G.
12.499.356.4At1g72810843612threonine synthase, putativeF:pyridoxal phosphate binding, catalytic activity, threonine synthase activity;P:amino acid metabolic process, threonine biosynthetic process, metabolic process;C:chloroplast;BOAMPFO.I.C.G.H.G.
12.399.328.5At5g57960835907GTP-binding family proteinF:GTP binding;P:unknown;C:chloroplast;BOMAPFO.I.C.G.H.G.
12.299.352.0At2g25840817126OVA4 (ovule abortion 4)F:nucleotide binding, aminoacyl-tRNA ligase activity, tryptophan-tRNA ligase activity, ATP binding;P:N-terminal protein myristoylation, ovule development, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBMFAPO.I.C.G.H.G.
11.999.327.7At2g39190818504ATATH8member of ATH subfamilyO.I.C.G.H.G.
11.899.3261.0At4g13770827011CYP83A1 (CYTOCHROME P450 83A1)Encodes a cytochrome p450 enzyme that catalyzes the initial conversion of aldoximes to thiohydroximates in the synthesis of glucosinolates not derived from tryptophan. Also has a role in auxin homeostasis.O.I.C.G.H.G.
11.899.3104.9At5g54390835527AHL (ARABIDOPSIS HAL2-LIKE)Encodes a 3'-phosphoadenosine-5'-phosphate (PAP) phosphatase that is sensitive to physiological concentrations of Na+. It does not also act as inositol polyphosphate 1-phosphatases, which other members of the HAL2-like family do. It is proposed that AHL acts in concert with sulphotransferases to prevent both the toxicity of PAP on RNA processing enzymes as well as the product inhibition of PAP on sulphate conjugation.O.I.C.G.H.G.
11.499.3104.6At3g63190825494RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)F:molecular_function unknown;P:defense response to bacterium, translation;C:thylakoid, chloroplast stroma, chloroplast;BOMPFO.I.C.G.H.G.
11.299.2280.6At3g19710821508BCAT4 (BRANCHED-CHAIN AMINOTRANSFERASE4)Belongs to the branched-chain amino acid aminotransferase gene family. Encodes a methionine-oxo-acid transaminase. Involved in the methionine chain elongation pathway that leads to the ultimate biosynthesis of methionine-derived glucosinolates.O.I.C.G.H.G.
11.299.2195.3At5g48490834905protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
11.299.245.8At1g71720843502S1 RNA-binding domain-containing proteinF:RNA binding;P:unknown;C:chloroplast;BOPMAFO.I.C.G.H.G.
10.999.230.5At4g23940828494FtsH protease, putativeF:in 7 functions;P:proteolysis;C:chloroplast;OBMFPAVO.I.C.G.H.G.
10.999.227.2At3g05400819704sugar transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOAO.I.C.G.H.G.
10.899.233.9At5g18570831975GTP1/OBG family proteinF:GTP binding, nucleotide binding;P:unknown;C:intracellular, chloroplast;BOMFAPVO.I.C.G.H.G.
10.799.216.4At5g28030832873cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putativeF:pyridoxal phosphate binding, cysteine synthase activity, catalytic activity;P:cysteine biosynthetic process from serine, cysteine biosynthetic process, metabolic process;C:unknown;BOFPMAO.I.C.G.H.G.
10.699.253.7At3g10270820189ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)Protein targeting to mitochondria is influenced by UTR sequences.O.I.C.G.H.G.
10.699.249.7At1g79560844294FTSH12 (FTSH PROTEASE 12)encodes an FtsH protease that is localized to the chloroplastO.I.C.G.H.G.
10.699.213.2At4g19020827640CMT2 (chromomethylase 2)F:chromatin binding, DNA binding;P:chromatin assembly or disassembly, DNA methylation;C:chromatin, nucleus;BOMPFAVO.I.C.G.H.G.
10.599.2134.3At1g10370837576ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9)F:glutathione transferase activity;P:response to water deprivation, toxin catabolic process;C:chloroplast, cytoplasm;BPOMFO.I.C.G.H.G.
10.599.246.0At5g66470836779GTP binding / RNA bindingF:RNA binding, GTP binding;P:unknown;C:chloroplast;BOMAPFO.I.C.G.H.G.
10.599.237.1At3g16290820876EMB2083 (embryo defective 2083)F:in 8 functions;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAVO.I.C.G.H.G.
10.499.2115.9At1g12800837836S1 RNA-binding domain-containing proteinF:RNA binding;P:unknown;C:chloroplast;BOMFPAVO.I.C.G.H.G.
10.499.280.0At1g32200840112ATS1Encodes a chloroplast glycerol-3-phosphate acyltransferase.Involved in the biosynthesis of chloroplast phosphatidylglycerol.O.I.C.G.H.G.
10.399.2209.8At5g23010832365MAM1 (METHYLTHIOALKYLMALATE SYNTHASE 1)Encodes a methylthioalkylmalate synthase, catalyzes the condensation reactions of the first two rounds of methionine chain elongation in the biosynthesis of methionine-derived glucosinolates.O.I.C.G.H.G.
10.399.273.3At3g58140824983phenylalanyl-tRNA synthetase class IIc family proteinF:in 6 functions;P:tRNA processing, phenylalanyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast, membrane;BOMFAPO.I.C.G.H.G.
10.399.236.0At3g49260824087iqd21 (IQ-domain 21)F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOFBO.I.C.G.H.G.
10.299.241.2At1g21350838734antioxidant/ oxidoreductaseF:oxidoreductase activity, antioxidant activity;P:unknown;C:chloroplast;OBPAMO.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage