CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM183512

Assay name MYB76_OE_rep2

GSE experiment GSE7570: ATR1_like_Clade_OE_and_miR

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
213.2 100.0 90.0 At5g07700 830663 MYB76 (myb domain protein 76) Encodes a putative transcription factor (MYB76). O.I. C.G. H.G.
181.7 100.0 365.9 At4g03050 828104 AOP3 Transcriptional silent in leaf tissues of ecotype Col. The transcribed allele in ecotype Ler encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of hydroxyalkyl glucosinolates among different ecotypes of Arabidopsis. O.I. C.G. H.G.
127.6 99.9 187.5 At5g26220 832691 ChaC-like family protein F:molecular_function unknown;P:response to lead ion, response to cadmium ion;C:cellular_component unknown;BMOFP O.I. C.G. H.G.
80.5 99.9 97.7 At3g03190 821227 ATGSTF11 (GLUTATHIONE S-TRANSFERASE F11) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
75.5 99.9 79.6 At1g65860 842897 FMO GS-OX1 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1) belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates O.I. C.G. H.G.
75.3 99.9 248.4 At2g43100 818912 aconitase C-terminal domain-containing protein F:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOAFPM O.I. C.G. H.G.
67.8 99.9 93.6 At3g22740 821845 HMT3 homocysteine S-methyltransferase (HMT3) O.I. C.G. H.G.
64.7 99.8 174.4 At4g12030 826811 bile acid:sodium symporter family protein F:transporter activity, bile acid:sodium symporter activity;P:sodium ion transport;C:membrane;OBMPA O.I. C.G. H.G.
48.7 99.8 218.9 At3g58990 825068 aconitase C-terminal domain-containing protein F:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOFAPM O.I. C.G. H.G.
44.5 99.8 226.6 At2g20610 816585 SUR1 (SUPERROOT 1) Confers auxin overproduction. Mutants have an over-proliferation of lateral roots. Encodes a C-S lyase involved in converting S-alkylthiohydroximate to thiohydroximate in glucosinolate biosynthesis. O.I. C.G. H.G.
41.1 99.8 96.1 At1g62560 842553 FMO GS-OX3 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 3) belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates O.I. C.G. H.G.
37.1 99.7 235.7 At1g21440 838742 mutase family protein F:isocitrate lyase activity, catalytic activity;P:metabolic process;C:chloroplast, chloroplast stroma;OBFPAM O.I. C.G. H.G.
35.3 99.7 42.6 At1g16060 838176 ovule development protein, putative F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBV O.I. C.G. H.G.
34.3 99.7 44.7 At4g30720 829195 electron carrier/ oxidoreductase F:electron carrier activity, oxidoreductase activity;P:unknown;C:chloroplast;BOAPF O.I. C.G. H.G.
31.0 99.7 187.7 At2g46650 819277 CB5-C (CYTOCHROME B5 ISOFORM C) member of Cytochromes b5 O.I. C.G. H.G.
30.9 99.7 35.5 At3g12520 820431 SULTR4 Encodes a sulfate transporter that in induced under sulfate limitation. O.I. C.G. H.G.
29.5 99.7 46.3 At1g16400 838210 CYP79F2 Encodes cytochrome P450 CYP79F2. O.I. C.G. H.G.
29.4 99.7 90.8 At1g31230 840011 AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I) Encodes a bifunctional aspartate kinase/homoserine dehydrogenase. These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, isoleucine and methionine. O.I. C.G. H.G.
29.3 99.7 18.8 At4g34650 829617 SQS2 (SQUALENE SYNTHASE 2) Encodes a protein with similarity to squalene synthase which catalyzes the first committed step in sterol biosynthesis. To date no experimental evidence exists that SQS2 functions as a squalene synthase and some experiments indicate it does not have this function. O.I. C.G. H.G.
26.5 99.7 20.0 At1g12030 837755 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
26.0 99.7 108.3 At1g18590 838440 SOT17 (SULFOTRANSFERASE 17) encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates. O.I. C.G. H.G.
25.9 99.7 125.0 At2g31790 817736 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
25.3 99.6 59.6 At5g10690 830933 pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POMFBA O.I. C.G. H.G.
24.5 99.6 60.6 At5g16715 831533 EMB2247 (embryo defective 2247) F:valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:chloroplast stroma, chloroplast;OBMAFP O.I. C.G. H.G.
23.7 99.6 201.8 At3g16670 820919 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;P O.I. C.G. H.G.
23.6 99.6 172.5 At3g02020 821287 AK3 (ASPARTATE KINASE 3) encodes a monofunctional aspartate kinase O.I. C.G. H.G.
23.1 99.6 104.0 At5g48850 834943 ATSDI1 (SULPHUR DEFICIENCY-INDUCED 1) homologous to the wheat sulphate deficiency-induced gene sdi1. Expression in root and leaf is induced by sulfur starvation. Knockout mutants retained higher root and leaf sulfate concentrations, indicating a role in regulation of stored sulfate pools. O.I. C.G. H.G.
22.8 99.6 40.4 At2g38780 818460 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBM O.I. C.G. H.G.
22.3 99.6 89.2 At4g14680 827118 APS3 ATP sulfurylase O.I. C.G. H.G.
22.0 99.6 68.7 At1g30520 839932 AAE14 (Acyl-Activating Enzyme 14) Encodes a chloroplast O-succinylbenzoyl-CoA ligase. Involved in phylloquinone biosynthesis. Knock mutant is seedling lethal. O.I. C.G. H.G.
22.0 99.6 28.7 At2g32640 817824 unknown protein F:unknown;P:unknown;C:chloroplast;BPO O.I. C.G. H.G.
21.9 99.6 43.4 At1g76110 843943 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein F:transcription factor activity;P:regulation of transcription;C:intracellular, nucleus;MOFP O.I. C.G. H.G.
21.4 99.6 190.9 At4g39940 830153 AKN2 (APS-kinase 2) adenosine-5'-phosphosulfate-kinase (akn2) mRNA, complete O.I. C.G. H.G.
21.3 99.6 21.6 At5g37130 833685 binding F:binding;P:biological_process unknown;C:apoplast;OBAMFP O.I. C.G. H.G.
21.1 99.6 216.6 At3g49680 824130 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. O.I. C.G. H.G.
21.0 99.6 76.7 At2g44460 819053 BGLU28 (BETA GLUCOSIDASE 28) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:membrane;BOPMFA O.I. C.G. H.G.
20.4 99.6 67.1 At1g12860 837843 SCRM2 (SCREAM 2) Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation. O.I. C.G. H.G.
19.3 99.6 166.2 At5g63980 836519 SAL1 Encodes a bifunctional protein that has 3'(2'),5'-bisphosphate nucleotidase and inositol polyphosphate 1-phosphatase activities and rescues sulfur assimilation mutants in yeast. It is involved in the response to cold, drought (negative regulator of drought tolerance), and ABA. Mutants in this gene exhibit enhanced induction of stress genes in response to cold, ABA, salt and dehydration due to higher accumulation of the second messenger, inositol (1,4,5)- triphosphate (IP(3)). Involved in degradation of small mRNAs. Mutants also affect the accumulation of miRNA target cleavage products. Regulates light-dependent repression of hypocotyl elongation and flowering time via its 3'(2'),5'-bisphosphate nucleotidase activity. O.I. C.G. H.G.
19.1 99.6 160.1 At3g57050 824872 CBL (cystathionine beta-lyase) Encodes second enzyme in the methionine biosynthetic pathway O.I. C.G. H.G.
18.3 99.5 57.2 At5g01500 831861 mitochondrial substrate carrier family protein encodes an ATP/ADP carrier that is located to the thylakoid membrane involved in providing ATP during thylakoid biogenesis and turnover O.I. C.G. H.G.
18.3 99.5 39.8 At3g13180 820508 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein F:RNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;BOMFAP O.I. C.G. H.G.
18.2 99.5 25.7 At3g63510 825526 FAD binding / catalytic/ tRNA dihydrouridine synthase F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
17.8 99.5 180.3 At1g31180 840006 3-isopropylmalate dehydrogenase, chloroplast, putative The AtIMD3 is one out of 3 genes encoding the enzyme 3-isopropylmalate dehydrogenase involved in leucine biosynthesis in Arabidopsis. Its subcellular location has been targeted to plastids. O.I. C.G. H.G.
17.6 99.5 180.3 At1g74090 843749 SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18) encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates. O.I. C.G. H.G.
16.6 99.5 152.8 At2g14750 815963 APK (APS KINASE) Encodes a functional APS kinase O.I. C.G. H.G.
16.5 99.5 78.6 At3g59780 825147 - F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPV O.I. C.G. H.G.
16.4 99.5 110.3 At3g54500 824615 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB O.I. C.G. H.G.
16.4 99.5 39.3 At4g33000 829437 CBL10 (CALCINEURIN B-LIKE 10) Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis. O.I. C.G. H.G.
16.3 99.5 67.5 At1g15290 838097 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MBOFPAV O.I. C.G. H.G.
15.2 99.4 117.9 At5g07460 830637 PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2) ubiquitous enzyme that repairs oxidatively damaged proteins. Methionine sulfoxide reductase activity. Mutant lacking reductase activity showed increased protein oxidation, nitration and glycation of specific amino acid residues during darkness. O.I. C.G. H.G.
15.2 99.4 22.8 At1g60270 3767579 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
15.1 99.4 156.3 At2g47940 819406 DEGP2 Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product. O.I. C.G. H.G.
15.1 99.4 53.6 At3g02830 821230 ZFN1 (ZINC FINGER PROTEIN 1) Encodes a zinc finger protein. O.I. C.G. H.G.
15.1 99.4 39.5 At2g30695 817620 - F:molecular_function unknown;P:protein folding, protein transport;C:chloroplast stroma, chloroplast;BOP O.I. C.G. H.G.
15.1 99.4 32.2 At4g34830 829635 - F:unknown;P:unknown;C:chloroplast;POMFBA O.I. C.G. H.G.
15.0 99.4 36.3 At3g04340 819589 emb2458 (embryo defective 2458) F:nucleoside-triphosphatase activity, ATPase activity, metalloendopeptidase activity, nucleotide binding, ATP binding;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAV O.I. C.G. H.G.
14.8 99.4 133.3 At5g64940 836618 ATATH13 Encodes a member of ATH subfamily of ATP-binding cassette (ABC) proteins. O.I. C.G. H.G.
14.7 99.4 19.7 At1g60990 842391 aminomethyltransferase F:aminomethyltransferase activity;P:glycine catabolic process, glycine decarboxylation via glycine cleavage system;C:chloroplast;OBMAFP O.I. C.G. H.G.
14.3 99.4 23.8 At3g56160 824782 bile acid:sodium symporter F:bile acid:sodium symporter activity;P:sodium ion transport;C:chloroplast, chloroplast envelope;BOMPFA O.I. C.G. H.G.
14.1 99.4 37.5 At5g64050 836526 ERS (GLUTAMATE TRNA SYNTHETASE) Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana. O.I. C.G. H.G.
14.0 99.4 80.0 At5g10180 830882 AST68 Encodes a low-affinity sulfate transporter expressed in the root cap and central cylinder, where it is induced by sulfur starvation. Expression in the shoot vascular system is not induced by sulfur starvation. O.I. C.G. H.G.
13.9 99.4 40.6 At1g64150 842719 unknown protein F:unknown;P:unknown;C:chloroplast, membrane;BOMFPA O.I. C.G. H.G.
13.8 99.4 45.6 At1g77060 844041 mutase family protein F:catalytic activity;P:metabolic process;C:chloroplast, chloroplast stroma;OBFPAM O.I. C.G. H.G.
13.8 99.4 30.8 At4g20130 827759 PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14) F:unknown;P:unknown;C:plastid chromosome, chloroplast, nucleoid;PFMO O.I. C.G. H.G.
13.6 99.4 43.5 At4g04850 825822 KEA3 member of Putative potassium transporter family O.I. C.G. H.G.
13.5 99.4 41.2 At1g14030 837964 ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative F:[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity;P:unknown;C:chloroplast, chloroplast stroma;MPFO O.I. C.G. H.G.
13.4 99.4 49.0 At1g62800 842579 ASP4 (ASPARTATE AMINOTRANSFERASE 4) Encodes aspartate aminotransferase (Asp4). O.I. C.G. H.G.
13.1 99.4 51.6 At3g60370 825208 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein Encodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx. Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined. O.I. C.G. H.G.
12.9 99.3 109.9 At3g14930 820722 HEME1 F:uroporphyrinogen decarboxylase activity;P:porphyrin biosynthetic process;C:chloroplast stroma, chloroplast;OBMFAP O.I. C.G. H.G.
12.9 99.3 55.1 At3g62910 825466 APG3 (ALBINO AND PALE GREEN) Isolated in a screen for chloroplast development mutants. Pale green, albino seedlings arrest early in seedling development. O.I. C.G. H.G.
12.8 99.3 59.7 At3g15520 820791 peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase F:peptidyl-prolyl cis-trans isomerase activity;P:unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOPA O.I. C.G. H.G.
12.5 99.3 279.6 At3g05730 819742 - Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
12.5 99.3 36.0 At3g49140 824075 - F:unknown;P:unknown;C:unknown;PBMOFVA O.I. C.G. H.G.
12.4 99.3 87.8 At2g34620 818027 mitochondrial transcription termination factor-related / mTERF-related F:molecular_function unknown;P:biological_process unknown;C:unknown;POM O.I. C.G. H.G.
12.4 99.3 56.4 At1g72810 843612 threonine synthase, putative F:pyridoxal phosphate binding, catalytic activity, threonine synthase activity;P:amino acid metabolic process, threonine biosynthetic process, metabolic process;C:chloroplast;BOAMPF O.I. C.G. H.G.
12.3 99.3 28.5 At5g57960 835907 GTP-binding family protein F:GTP binding;P:unknown;C:chloroplast;BOMAPF O.I. C.G. H.G.
12.2 99.3 52.0 At2g25840 817126 OVA4 (ovule abortion 4) F:nucleotide binding, aminoacyl-tRNA ligase activity, tryptophan-tRNA ligase activity, ATP binding;P:N-terminal protein myristoylation, ovule development, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBMFAP O.I. C.G. H.G.
11.9 99.3 27.7 At2g39190 818504 ATATH8 member of ATH subfamily O.I. C.G. H.G.
11.8 99.3 261.0 At4g13770 827011 CYP83A1 (CYTOCHROME P450 83A1) Encodes a cytochrome p450 enzyme that catalyzes the initial conversion of aldoximes to thiohydroximates in the synthesis of glucosinolates not derived from tryptophan. Also has a role in auxin homeostasis. O.I. C.G. H.G.
11.8 99.3 104.9 At5g54390 835527 AHL (ARABIDOPSIS HAL2-LIKE) Encodes a 3'-phosphoadenosine-5'-phosphate (PAP) phosphatase that is sensitive to physiological concentrations of Na+. It does not also act as inositol polyphosphate 1-phosphatases, which other members of the HAL2-like family do. It is proposed that AHL acts in concert with sulphotransferases to prevent both the toxicity of PAP on RNA processing enzymes as well as the product inhibition of PAP on sulphate conjugation. O.I. C.G. H.G.
11.4 99.3 104.6 At3g63190 825494 RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR) F:molecular_function unknown;P:defense response to bacterium, translation;C:thylakoid, chloroplast stroma, chloroplast;BOMPF O.I. C.G. H.G.
11.2 99.2 280.6 At3g19710 821508 BCAT4 (BRANCHED-CHAIN AMINOTRANSFERASE4) Belongs to the branched-chain amino acid aminotransferase gene family. Encodes a methionine-oxo-acid transaminase. Involved in the methionine chain elongation pathway that leads to the ultimate biosynthesis of methionine-derived glucosinolates. O.I. C.G. H.G.
11.2 99.2 195.3 At5g48490 834905 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
11.2 99.2 45.8 At1g71720 843502 S1 RNA-binding domain-containing protein F:RNA binding;P:unknown;C:chloroplast;BOPMAF O.I. C.G. H.G.
10.9 99.2 30.5 At4g23940 828494 FtsH protease, putative F:in 7 functions;P:proteolysis;C:chloroplast;OBMFPAV O.I. C.G. H.G.
10.9 99.2 27.2 At3g05400 819704 sugar transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOA O.I. C.G. H.G.
10.8 99.2 33.9 At5g18570 831975 GTP1/OBG family protein F:GTP binding, nucleotide binding;P:unknown;C:intracellular, chloroplast;BOMFAPV O.I. C.G. H.G.
10.7 99.2 16.4 At5g28030 832873 cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative F:pyridoxal phosphate binding, cysteine synthase activity, catalytic activity;P:cysteine biosynthetic process from serine, cysteine biosynthetic process, metabolic process;C:unknown;BOFPMA O.I. C.G. H.G.
10.6 99.2 53.7 At3g10270 820189 ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) Protein targeting to mitochondria is influenced by UTR sequences. O.I. C.G. H.G.
10.6 99.2 49.7 At1g79560 844294 FTSH12 (FTSH PROTEASE 12) encodes an FtsH protease that is localized to the chloroplast O.I. C.G. H.G.
10.6 99.2 13.2 At4g19020 827640 CMT2 (chromomethylase 2) F:chromatin binding, DNA binding;P:chromatin assembly or disassembly, DNA methylation;C:chromatin, nucleus;BOMPFAV O.I. C.G. H.G.
10.5 99.2 134.3 At1g10370 837576 ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9) F:glutathione transferase activity;P:response to water deprivation, toxin catabolic process;C:chloroplast, cytoplasm;BPOMF O.I. C.G. H.G.
10.5 99.2 46.0 At5g66470 836779 GTP binding / RNA binding F:RNA binding, GTP binding;P:unknown;C:chloroplast;BOMAPF O.I. C.G. H.G.
10.5 99.2 37.1 At3g16290 820876 EMB2083 (embryo defective 2083) F:in 8 functions;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAV O.I. C.G. H.G.
10.4 99.2 115.9 At1g12800 837836 S1 RNA-binding domain-containing protein F:RNA binding;P:unknown;C:chloroplast;BOMFPAV O.I. C.G. H.G.
10.4 99.2 80.0 At1g32200 840112 ATS1 Encodes a chloroplast glycerol-3-phosphate acyltransferase.Involved in the biosynthesis of chloroplast phosphatidylglycerol. O.I. C.G. H.G.
10.3 99.2 209.8 At5g23010 832365 MAM1 (METHYLTHIOALKYLMALATE SYNTHASE 1) Encodes a methylthioalkylmalate synthase, catalyzes the condensation reactions of the first two rounds of methionine chain elongation in the biosynthesis of methionine-derived glucosinolates. O.I. C.G. H.G.
10.3 99.2 73.3 At3g58140 824983 phenylalanyl-tRNA synthetase class IIc family protein F:in 6 functions;P:tRNA processing, phenylalanyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast, membrane;BOMFAP O.I. C.G. H.G.
10.3 99.2 36.0 At3g49260 824087 iqd21 (IQ-domain 21) F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOFB O.I. C.G. H.G.
10.2 99.2 41.2 At1g21350 838734 antioxidant/ oxidoreductase F:oxidoreductase activity, antioxidant activity;P:unknown;C:chloroplast;OBPAM O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
213.2	100.0	90.0	At5g07700	830663	MYB76 (myb domain protein 76)	Encodes a putative transcription factor (MYB76).	O.I.	C.G.	H.G.
181.7	100.0	365.9	At4g03050	828104	AOP3	Transcriptional silent in leaf tissues of ecotype Col. The transcribed allele in ecotype Ler encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of hydroxyalkyl glucosinolates among different ecotypes of Arabidopsis.	O.I.	C.G.	H.G.
127.6	99.9	187.5	At5g26220	832691	ChaC-like family protein	F:molecular_function unknown;P:response to lead ion, response to cadmium ion;C:cellular_component unknown;BMOFP	O.I.	C.G.	H.G.
80.5	99.9	97.7	At3g03190	821227	ATGSTF11 (GLUTATHIONE S-TRANSFERASE F11)	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
75.5	99.9	79.6	At1g65860	842897	FMO GS-OX1 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1)	belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates	O.I.	C.G.	H.G.
75.3	99.9	248.4	At2g43100	818912	aconitase C-terminal domain-containing protein	F:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOAFPM	O.I.	C.G.	H.G.
67.8	99.9	93.6	At3g22740	821845	HMT3	homocysteine S-methyltransferase (HMT3)	O.I.	C.G.	H.G.
64.7	99.8	174.4	At4g12030	826811	bile acid:sodium symporter family protein	F:transporter activity, bile acid:sodium symporter activity;P:sodium ion transport;C:membrane;OBMPA	O.I.	C.G.	H.G.
48.7	99.8	218.9	At3g58990	825068	aconitase C-terminal domain-containing protein	F:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOFAPM	O.I.	C.G.	H.G.
44.5	99.8	226.6	At2g20610	816585	SUR1 (SUPERROOT 1)	Confers auxin overproduction. Mutants have an over-proliferation of lateral roots. Encodes a C-S lyase involved in converting S-alkylthiohydroximate to thiohydroximate in glucosinolate biosynthesis.	O.I.	C.G.	H.G.
41.1	99.8	96.1	At1g62560	842553	FMO GS-OX3 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 3)	belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates	O.I.	C.G.	H.G.
37.1	99.7	235.7	At1g21440	838742	mutase family protein	F:isocitrate lyase activity, catalytic activity;P:metabolic process;C:chloroplast, chloroplast stroma;OBFPAM	O.I.	C.G.	H.G.
35.3	99.7	42.6	At1g16060	838176	ovule development protein, putative	F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBV	O.I.	C.G.	H.G.
34.3	99.7	44.7	At4g30720	829195	electron carrier/ oxidoreductase	F:electron carrier activity, oxidoreductase activity;P:unknown;C:chloroplast;BOAPF	O.I.	C.G.	H.G.
31.0	99.7	187.7	At2g46650	819277	CB5-C (CYTOCHROME B5 ISOFORM C)	member of Cytochromes b5	O.I.	C.G.	H.G.
30.9	99.7	35.5	At3g12520	820431	SULTR4	Encodes a sulfate transporter that in induced under sulfate limitation.	O.I.	C.G.	H.G.
29.5	99.7	46.3	At1g16400	838210	CYP79F2	Encodes cytochrome P450 CYP79F2.	O.I.	C.G.	H.G.
29.4	99.7	90.8	At1g31230	840011	AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I)	Encodes a bifunctional aspartate kinase/homoserine dehydrogenase. These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, isoleucine and methionine.	O.I.	C.G.	H.G.
29.3	99.7	18.8	At4g34650	829617	SQS2 (SQUALENE SYNTHASE 2)	Encodes a protein with similarity to squalene synthase which catalyzes the first committed step in sterol biosynthesis. To date no experimental evidence exists that SQS2 functions as a squalene synthase and some experiments indicate it does not have this function.	O.I.	C.G.	H.G.
26.5	99.7	20.0	At1g12030	837755	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
26.0	99.7	108.3	At1g18590	838440	SOT17 (SULFOTRANSFERASE 17)	encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates.	O.I.	C.G.	H.G.
25.9	99.7	125.0	At2g31790	817736	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
25.3	99.6	59.6	At5g10690	830933	pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein	F:unknown;P:biological_process unknown;C:chloroplast;POMFBA	O.I.	C.G.	H.G.
24.5	99.6	60.6	At5g16715	831533	EMB2247 (embryo defective 2247)	F:valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:chloroplast stroma, chloroplast;OBMAFP	O.I.	C.G.	H.G.
23.7	99.6	201.8	At3g16670	820919	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;P	O.I.	C.G.	H.G.
23.6	99.6	172.5	At3g02020	821287	AK3 (ASPARTATE KINASE 3)	encodes a monofunctional aspartate kinase	O.I.	C.G.	H.G.
23.1	99.6	104.0	At5g48850	834943	ATSDI1 (SULPHUR DEFICIENCY-INDUCED 1)	homologous to the wheat sulphate deficiency-induced gene sdi1. Expression in root and leaf is induced by sulfur starvation. Knockout mutants retained higher root and leaf sulfate concentrations, indicating a role in regulation of stored sulfate pools.	O.I.	C.G.	H.G.
22.8	99.6	40.4	At2g38780	818460	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBM	O.I.	C.G.	H.G.
22.3	99.6	89.2	At4g14680	827118	APS3	ATP sulfurylase	O.I.	C.G.	H.G.
22.0	99.6	68.7	At1g30520	839932	AAE14 (Acyl-Activating Enzyme 14)	Encodes a chloroplast O-succinylbenzoyl-CoA ligase. Involved in phylloquinone biosynthesis. Knock mutant is seedling lethal.	O.I.	C.G.	H.G.
22.0	99.6	28.7	At2g32640	817824	unknown protein	F:unknown;P:unknown;C:chloroplast;BPO	O.I.	C.G.	H.G.
21.9	99.6	43.4	At1g76110	843943	high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein	F:transcription factor activity;P:regulation of transcription;C:intracellular, nucleus;MOFP	O.I.	C.G.	H.G.
21.4	99.6	190.9	At4g39940	830153	AKN2 (APS-kinase 2)	adenosine-5'-phosphosulfate-kinase (akn2) mRNA, complete	O.I.	C.G.	H.G.
21.3	99.6	21.6	At5g37130	833685	binding	F:binding;P:biological_process unknown;C:apoplast;OBAMFP	O.I.	C.G.	H.G.
21.1	99.6	216.6	At3g49680	824130	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.	O.I.	C.G.	H.G.
21.0	99.6	76.7	At2g44460	819053	BGLU28 (BETA GLUCOSIDASE 28)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:membrane;BOPMFA	O.I.	C.G.	H.G.
20.4	99.6	67.1	At1g12860	837843	SCRM2 (SCREAM 2)	Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation.	O.I.	C.G.	H.G.
19.3	99.6	166.2	At5g63980	836519	SAL1	Encodes a bifunctional protein that has 3'(2'),5'-bisphosphate nucleotidase and inositol polyphosphate 1-phosphatase activities and rescues sulfur assimilation mutants in yeast. It is involved in the response to cold, drought (negative regulator of drought tolerance), and ABA. Mutants in this gene exhibit enhanced induction of stress genes in response to cold, ABA, salt and dehydration due to higher accumulation of the second messenger, inositol (1,4,5)- triphosphate (IP(3)). Involved in degradation of small mRNAs. Mutants also affect the accumulation of miRNA target cleavage products. Regulates light-dependent repression of hypocotyl elongation and flowering time via its 3'(2'),5'-bisphosphate nucleotidase activity.	O.I.	C.G.	H.G.
19.1	99.6	160.1	At3g57050	824872	CBL (cystathionine beta-lyase)	Encodes second enzyme in the methionine biosynthetic pathway	O.I.	C.G.	H.G.
18.3	99.5	57.2	At5g01500	831861	mitochondrial substrate carrier family protein	encodes an ATP/ADP carrier that is located to the thylakoid membrane involved in providing ATP during thylakoid biogenesis and turnover	O.I.	C.G.	H.G.
18.3	99.5	39.8	At3g13180	820508	NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein	F:RNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;BOMFAP	O.I.	C.G.	H.G.
18.2	99.5	25.7	At3g63510	825526	FAD binding / catalytic/ tRNA dihydrouridine synthase	F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
17.8	99.5	180.3	At1g31180	840006	3-isopropylmalate dehydrogenase, chloroplast, putative	The AtIMD3 is one out of 3 genes encoding the enzyme 3-isopropylmalate dehydrogenase involved in leucine biosynthesis in Arabidopsis. Its subcellular location has been targeted to plastids.	O.I.	C.G.	H.G.
17.6	99.5	180.3	At1g74090	843749	SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)	encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates.	O.I.	C.G.	H.G.
16.6	99.5	152.8	At2g14750	815963	APK (APS KINASE)	Encodes a functional APS kinase	O.I.	C.G.	H.G.
16.5	99.5	78.6	At3g59780	825147	-	F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPV	O.I.	C.G.	H.G.
16.4	99.5	110.3	At3g54500	824615	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB	O.I.	C.G.	H.G.
16.4	99.5	39.3	At4g33000	829437	CBL10 (CALCINEURIN B-LIKE 10)	Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis.	O.I.	C.G.	H.G.
16.3	99.5	67.5	At1g15290	838097	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;MBOFPAV	O.I.	C.G.	H.G.
15.2	99.4	117.9	At5g07460	830637	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	ubiquitous enzyme that repairs oxidatively damaged proteins. Methionine sulfoxide reductase activity. Mutant lacking reductase activity showed increased protein oxidation, nitration and glycation of specific amino acid residues during darkness.	O.I.	C.G.	H.G.
15.2	99.4	22.8	At1g60270	3767579	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
15.1	99.4	156.3	At2g47940	819406	DEGP2	Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product.	O.I.	C.G.	H.G.
15.1	99.4	53.6	At3g02830	821230	ZFN1 (ZINC FINGER PROTEIN 1)	Encodes a zinc finger protein.	O.I.	C.G.	H.G.
15.1	99.4	39.5	At2g30695	817620	-	F:molecular_function unknown;P:protein folding, protein transport;C:chloroplast stroma, chloroplast;BOP	O.I.	C.G.	H.G.
15.1	99.4	32.2	At4g34830	829635	-	F:unknown;P:unknown;C:chloroplast;POMFBA	O.I.	C.G.	H.G.
15.0	99.4	36.3	At3g04340	819589	emb2458 (embryo defective 2458)	F:nucleoside-triphosphatase activity, ATPase activity, metalloendopeptidase activity, nucleotide binding, ATP binding;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAV	O.I.	C.G.	H.G.
14.8	99.4	133.3	At5g64940	836618	ATATH13	Encodes a member of ATH subfamily of ATP-binding cassette (ABC) proteins.	O.I.	C.G.	H.G.
14.7	99.4	19.7	At1g60990	842391	aminomethyltransferase	F:aminomethyltransferase activity;P:glycine catabolic process, glycine decarboxylation via glycine cleavage system;C:chloroplast;OBMAFP	O.I.	C.G.	H.G.
14.3	99.4	23.8	At3g56160	824782	bile acid:sodium symporter	F:bile acid:sodium symporter activity;P:sodium ion transport;C:chloroplast, chloroplast envelope;BOMPFA	O.I.	C.G.	H.G.
14.1	99.4	37.5	At5g64050	836526	ERS (GLUTAMATE TRNA SYNTHETASE)	Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.	O.I.	C.G.	H.G.
14.0	99.4	80.0	At5g10180	830882	AST68	Encodes a low-affinity sulfate transporter expressed in the root cap and central cylinder, where it is induced by sulfur starvation. Expression in the shoot vascular system is not induced by sulfur starvation.	O.I.	C.G.	H.G.
13.9	99.4	40.6	At1g64150	842719	unknown protein	F:unknown;P:unknown;C:chloroplast, membrane;BOMFPA	O.I.	C.G.	H.G.
13.8	99.4	45.6	At1g77060	844041	mutase family protein	F:catalytic activity;P:metabolic process;C:chloroplast, chloroplast stroma;OBFPAM	O.I.	C.G.	H.G.
13.8	99.4	30.8	At4g20130	827759	PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14)	F:unknown;P:unknown;C:plastid chromosome, chloroplast, nucleoid;PFMO	O.I.	C.G.	H.G.
13.6	99.4	43.5	At4g04850	825822	KEA3	member of Putative potassium transporter family	O.I.	C.G.	H.G.
13.5	99.4	41.2	At1g14030	837964	ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative	F:[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity;P:unknown;C:chloroplast, chloroplast stroma;MPFO	O.I.	C.G.	H.G.
13.4	99.4	49.0	At1g62800	842579	ASP4 (ASPARTATE AMINOTRANSFERASE 4)	Encodes aspartate aminotransferase (Asp4).	O.I.	C.G.	H.G.
13.1	99.4	51.6	At3g60370	825208	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	Encodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx. Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined.	O.I.	C.G.	H.G.
12.9	99.3	109.9	At3g14930	820722	HEME1	F:uroporphyrinogen decarboxylase activity;P:porphyrin biosynthetic process;C:chloroplast stroma, chloroplast;OBMFAP	O.I.	C.G.	H.G.
12.9	99.3	55.1	At3g62910	825466	APG3 (ALBINO AND PALE GREEN)	Isolated in a screen for chloroplast development mutants. Pale green, albino seedlings arrest early in seedling development.	O.I.	C.G.	H.G.
12.8	99.3	59.7	At3g15520	820791	peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase	F:peptidyl-prolyl cis-trans isomerase activity;P:unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOPA	O.I.	C.G.	H.G.
12.5	99.3	279.6	At3g05730	819742	-	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
12.5	99.3	36.0	At3g49140	824075	-	F:unknown;P:unknown;C:unknown;PBMOFVA	O.I.	C.G.	H.G.
12.4	99.3	87.8	At2g34620	818027	mitochondrial transcription termination factor-related / mTERF-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;POM	O.I.	C.G.	H.G.
12.4	99.3	56.4	At1g72810	843612	threonine synthase, putative	F:pyridoxal phosphate binding, catalytic activity, threonine synthase activity;P:amino acid metabolic process, threonine biosynthetic process, metabolic process;C:chloroplast;BOAMPF	O.I.	C.G.	H.G.
12.3	99.3	28.5	At5g57960	835907	GTP-binding family protein	F:GTP binding;P:unknown;C:chloroplast;BOMAPF	O.I.	C.G.	H.G.
12.2	99.3	52.0	At2g25840	817126	OVA4 (ovule abortion 4)	F:nucleotide binding, aminoacyl-tRNA ligase activity, tryptophan-tRNA ligase activity, ATP binding;P:N-terminal protein myristoylation, ovule development, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBMFAP	O.I.	C.G.	H.G.
11.9	99.3	27.7	At2g39190	818504	ATATH8	member of ATH subfamily	O.I.	C.G.	H.G.
11.8	99.3	261.0	At4g13770	827011	CYP83A1 (CYTOCHROME P450 83A1)	Encodes a cytochrome p450 enzyme that catalyzes the initial conversion of aldoximes to thiohydroximates in the synthesis of glucosinolates not derived from tryptophan. Also has a role in auxin homeostasis.	O.I.	C.G.	H.G.
11.8	99.3	104.9	At5g54390	835527	AHL (ARABIDOPSIS HAL2-LIKE)	Encodes a 3'-phosphoadenosine-5'-phosphate (PAP) phosphatase that is sensitive to physiological concentrations of Na+. It does not also act as inositol polyphosphate 1-phosphatases, which other members of the HAL2-like family do. It is proposed that AHL acts in concert with sulphotransferases to prevent both the toxicity of PAP on RNA processing enzymes as well as the product inhibition of PAP on sulphate conjugation.	O.I.	C.G.	H.G.
11.4	99.3	104.6	At3g63190	825494	RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)	F:molecular_function unknown;P:defense response to bacterium, translation;C:thylakoid, chloroplast stroma, chloroplast;BOMPF	O.I.	C.G.	H.G.
11.2	99.2	280.6	At3g19710	821508	BCAT4 (BRANCHED-CHAIN AMINOTRANSFERASE4)	Belongs to the branched-chain amino acid aminotransferase gene family. Encodes a methionine-oxo-acid transaminase. Involved in the methionine chain elongation pathway that leads to the ultimate biosynthesis of methionine-derived glucosinolates.	O.I.	C.G.	H.G.
11.2	99.2	195.3	At5g48490	834905	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
11.2	99.2	45.8	At1g71720	843502	S1 RNA-binding domain-containing protein	F:RNA binding;P:unknown;C:chloroplast;BOPMAF	O.I.	C.G.	H.G.
10.9	99.2	30.5	At4g23940	828494	FtsH protease, putative	F:in 7 functions;P:proteolysis;C:chloroplast;OBMFPAV	O.I.	C.G.	H.G.
10.9	99.2	27.2	At3g05400	819704	sugar transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOA	O.I.	C.G.	H.G.
10.8	99.2	33.9	At5g18570	831975	GTP1/OBG family protein	F:GTP binding, nucleotide binding;P:unknown;C:intracellular, chloroplast;BOMFAPV	O.I.	C.G.	H.G.
10.7	99.2	16.4	At5g28030	832873	cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative	F:pyridoxal phosphate binding, cysteine synthase activity, catalytic activity;P:cysteine biosynthetic process from serine, cysteine biosynthetic process, metabolic process;C:unknown;BOFPMA	O.I.	C.G.	H.G.
10.6	99.2	53.7	At3g10270	820189	ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)	Protein targeting to mitochondria is influenced by UTR sequences.	O.I.	C.G.	H.G.
10.6	99.2	49.7	At1g79560	844294	FTSH12 (FTSH PROTEASE 12)	encodes an FtsH protease that is localized to the chloroplast	O.I.	C.G.	H.G.
10.6	99.2	13.2	At4g19020	827640	CMT2 (chromomethylase 2)	F:chromatin binding, DNA binding;P:chromatin assembly or disassembly, DNA methylation;C:chromatin, nucleus;BOMPFAV	O.I.	C.G.	H.G.
10.5	99.2	134.3	At1g10370	837576	ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9)	F:glutathione transferase activity;P:response to water deprivation, toxin catabolic process;C:chloroplast, cytoplasm;BPOMF	O.I.	C.G.	H.G.
10.5	99.2	46.0	At5g66470	836779	GTP binding / RNA binding	F:RNA binding, GTP binding;P:unknown;C:chloroplast;BOMAPF	O.I.	C.G.	H.G.
10.5	99.2	37.1	At3g16290	820876	EMB2083 (embryo defective 2083)	F:in 8 functions;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAV	O.I.	C.G.	H.G.
10.4	99.2	115.9	At1g12800	837836	S1 RNA-binding domain-containing protein	F:RNA binding;P:unknown;C:chloroplast;BOMFPAV	O.I.	C.G.	H.G.
10.4	99.2	80.0	At1g32200	840112	ATS1	Encodes a chloroplast glycerol-3-phosphate acyltransferase.Involved in the biosynthesis of chloroplast phosphatidylglycerol.	O.I.	C.G.	H.G.
10.3	99.2	209.8	At5g23010	832365	MAM1 (METHYLTHIOALKYLMALATE SYNTHASE 1)	Encodes a methylthioalkylmalate synthase, catalyzes the condensation reactions of the first two rounds of methionine chain elongation in the biosynthesis of methionine-derived glucosinolates.	O.I.	C.G.	H.G.
10.3	99.2	73.3	At3g58140	824983	phenylalanyl-tRNA synthetase class IIc family protein	F:in 6 functions;P:tRNA processing, phenylalanyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast, membrane;BOMFAP	O.I.	C.G.	H.G.
10.3	99.2	36.0	At3g49260	824087	iqd21 (IQ-domain 21)	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOFB	O.I.	C.G.	H.G.
10.2	99.2	41.2	At1g21350	838734	antioxidant/ oxidoreductase	F:oxidoreductase activity, antioxidant activity;P:unknown;C:chloroplast;OBPAM	O.I.	C.G.	H.G.

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GSM ID	GSM183512
Assay name	MYB76_OE_rep2
GSE experiment	GSE7570: ATR1_like_Clade_OE_and_miR

Microarray experiments to specifically-expressed genes

GSM ID GSM183512 Assay name MYB76_OE_rep2 GSE experiment GSE7570: ATR1_like_Clade_OE_and_miR

GSM ID GSM183512

Assay name MYB76_OE_rep2

GSE experiment GSE7570: ATR1_like_Clade_OE_and_miR