Microarray experiments to specifically-expressed genes

GSM ID GSM183504
Assay name WT_for_MYB29/76_rep1
GSE experiment GSE7570: ATR1_like_Clade_OE_and_miR

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
28.299.7230.5At1g01060839341LHY (LATE ELONGATED HYPOCOTYL)LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1O.I.C.G.H.G.
27.799.729.1At1g80080844348TMM (TOO MANY MOUTHS)Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development.O.I.C.G.H.G.
21.699.657.5At1g60590842353polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBMOVAO.I.C.G.H.G.
18.399.573.9At1g11850837732unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFVAO.I.C.G.H.G.
18.299.5101.8At2g46830819296CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.O.I.C.G.H.G.
17.599.5244.7At5g48490834905protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
14.799.496.3At3g02380821298COL2 (constans-like 2)homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteinsO.I.C.G.H.G.
14.099.417.6At4g15430827214-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMOO.I.C.G.H.G.
13.499.412.8At5g53210835402SPCH (SPEECHLESS)Encodes a basic helix-loop-helix (bHLH) transcription factor that is necessary and sufficient for the asymmetric divisions that establish the stomatal lineage in Arabidopsis thaliana. Expression of SPCH in young epidermal cells allows these cells to make asymmetric divisions. SPCH is a substrate of a kinase MPK3 and MPK6.O.I.C.G.H.G.
12.699.310.0At4g16920827400disease resistance protein (TIR-NBS-LRR class), putativeF:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFVAO.I.C.G.H.G.
12.599.324.3At2g30540817603glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBOO.I.C.G.H.G.
12.399.3112.6At1g55960842047-F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOO.I.C.G.H.G.
11.899.381.6At2g31380817696STHa B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction.O.I.C.G.H.G.
11.799.342.8At5g17300831595myb family transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;PMOFVBO.I.C.G.H.G.
11.699.326.9At4g19830827727immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinF:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid lumen;BMOPFAO.I.C.G.H.G.
11.599.323.3At1g69160843247unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMVO.I.C.G.H.G.
11.499.317.0At5g28030832873cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putativeF:pyridoxal phosphate binding, cysteine synthase activity, catalytic activity;P:cysteine biosynthetic process from serine, cysteine biosynthetic process, metabolic process;C:unknown;BOFPMAO.I.C.G.H.G.
11.399.3181.6At5g65730836702xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:response to water deprivation;C:endomembrane system, cell wall, apoplast;PFBOO.I.C.G.H.G.
10.899.275.8At2g41250818724haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:mitochondrion;BOMAPFO.I.C.G.H.G.
10.899.231.4At5g59330836052lipid bindingF:lipid binding;P:lipid transport;C:endomembrane systemO.I.C.G.H.G.
10.799.296.6At5g15950831452adenosylmethionine decarboxylase family proteinF:adenosylmethionine decarboxylase activity;P:spermidine biosynthetic process, spermine biosynthetic process, polyamine biosynthetic process;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
10.699.220.9At2g44230819031unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:chloroplast;PFMBOO.I.C.G.H.G.
10.599.288.3At3g54500824615-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBO.I.C.G.H.G.
10.399.235.7At3g09580820115amine oxidase family proteinF:electron carrier activity, oxidoreductase activity;P:unknown;C:chloroplast, chloroplast envelope;BOMPFAO.I.C.G.H.G.
10.399.233.7At5g42760834285-F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMFO.I.C.G.H.G.
10.299.244.0At3g02830821230ZFN1 (ZINC FINGER PROTEIN 1)Encodes a zinc finger protein.O.I.C.G.H.G.
10.199.279.4At2g34620818027mitochondrial transcription termination factor-related / mTERF-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;POMO.I.C.G.H.G.
10.199.274.2At1g70940843432PIN3 (PIN-FORMED 3)A regulator of auxin efflux and involved in differential growth. PIN3 is expressed in gravity-sensing tissues, with PIN3 protein accumulating predominantly at the lateral cell surface. PIN3 localizes to the plasma membrane and to vesicles. In roots, PIN3 is expressed without pronounced polarity in tiers two and three of the columella cells, at the basal side of vascular cells, and to the lateral side of pericycle cells of the elongation zone. PIN3 overexpression inhibits root cell growth. Protein phosphorylation plays a role in PIN3 trafficking to the plasma membrane.O.I.C.G.H.G.
10.099.224.2At4g30720829195electron carrier/ oxidoreductaseF:electron carrier activity, oxidoreductase activity;P:unknown;C:chloroplast;BOAPFO.I.C.G.H.G.
9.999.152.6At1g15290838097bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MBOFPAVO.I.C.G.H.G.
9.799.173.3At5g18670831985BMY3putative beta-amylase BMY3 (BMY3)O.I.C.G.H.G.
9.799.145.7At1g30520839932AAE14 (Acyl-Activating Enzyme 14)Encodes a chloroplast O-succinylbenzoyl-CoA ligase. Involved in phylloquinone biosynthesis. Knock mutant is seedling lethal.O.I.C.G.H.G.
9.699.171.2At1g12520837808ATCCS (COPPER CHAPERONE FOR SOD1)Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta.O.I.C.G.H.G.
9.699.159.8At3g59780825147-F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPVO.I.C.G.H.G.
9.699.145.6At5g52570835334BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)Converts β-carotene to zeaxanthin via cryptoxanthin.O.I.C.G.H.G.
9.699.132.0At1g13650837926-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
9.599.1110.3At1g44446841029CH1 (CHLORINA 1)Encodes chlorophyllide a oxygenase which converts chlorophyllide a to chlorophyllide b by catalyzing two successive hydroxylations at the 7-methyl group of chlorophyllide a . Mutants are deficient in pigments that associate with thylakoid membrane proteins, lacking chlorophyll b and light-harvesting proteins of photosystem II. The protein was shown through cross-linking experiments to interact with Toc75, Toc34, Tic40, Tic20 and Tic22.O.I.C.G.H.G.
9.599.1106.5At1g64860842794SIGA (SIGMA FACTOR A)Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzymeO.I.C.G.H.G.
9.499.139.9At3g21870821742CYCP2F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;FOMPBO.I.C.G.H.G.
9.499.119.4At5g55570835651unknown proteinF:unknown;P:unknown;C:chloroplast;PMO.I.C.G.H.G.
9.399.113.1At4g01460828089basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMOO.I.C.G.H.G.
9.199.125.5At2g38780818460unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBMO.I.C.G.H.G.
9.099.167.5At1g62780842577unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;PMOBAFO.I.C.G.H.G.
9.099.133.5At5g15360831388unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
8.999.0137.6At4g28080828923bindingF:binding;P:unknown;C:unknown;MBFOPAVO.I.C.G.H.G.
8.999.06.2At3g15550820794unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
8.899.091.1At3g14930820722HEME1F:uroporphyrinogen decarboxylase activity;P:porphyrin biosynthetic process;C:chloroplast stroma, chloroplast;OBMFAPO.I.C.G.H.G.
8.799.0157.9At5g64840836607ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5)member of GCN subfamilyO.I.C.G.H.G.



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