CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM179961

Assay name Arabidopsis roots, ethylene treatment, replica 2

GSE experiment GSE7432: Ethylene and auxin interactions in the roots of Arabidopsis seedlings

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
302.8 100.0 45.3 At3g53200 824486 AtMYB27 (myb domain protein 27) Member of the R2R3 factor gene family. O.I. C.G. H.G.
201.3 100.0 62.9 At5g20820 832205 auxin-responsive protein-related F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
116.5 99.9 165.1 At1g49570 841381 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
106.7 99.9 72.6 At4g18510 827583 CLE2 (CLAVATA3/ESR-RELATED) CLE2, putative ligand, member of large gene family homologous to Clavata3 O.I. C.G. H.G.
98.5 99.9 197.2 At4g28040 828919 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;PBOAM O.I. C.G. H.G.
97.2 99.9 184.5 At2g39980 818586 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
96.2 99.9 118.1 At2g47160 819329 BOR1 (REQUIRES HIGH BORON 1) Boron transporter. Protein accumulates in shoots and roots under conditions of boron deficiency and is degraded within several hours of restoring boron supply. Localized to the plasma membrane under B limitation, and to the cytoplasm after B application before degradation. Protein is transferred via the endosomes to the vacuole for degradation. O.I. C.G. H.G.
93.1 99.9 261.3 At4g07820 826263 pathogenesis-related protein, putative F:molecular_function unknown;P:unknown;C:endomembrane system, extracellular region;PMFBO O.I. C.G. H.G.
88.9 99.9 41.0 At3g46270 823772 receptor protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPBOFVA O.I. C.G. H.G.
86.4 99.9 147.7 At1g20160 838606 ATSBT5.2 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOFMA O.I. C.G. H.G.
77.5 99.9 14.5 At1g61750 842472 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
68.9 99.9 30.3 At2g42850 818885 CYP718 member of CYP718 O.I. C.G. H.G.
68.8 99.9 94.7 At2g23620 816894 MES1 (METHYL ESTERASE 1) Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES1 appears to be involved in MeSA hydrolysis in planta. Expression of MES1 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
63.9 99.8 23.4 At4g23510 828451 disease resistance protein (TIR class), putative F:transmembrane receptor activity;P:defense response signaling pathway, resistance gene-dependent, signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBO O.I. C.G. H.G.
63.5 99.8 18.9 At4g28410 828958 aminotransferase-related F:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAF O.I. C.G. H.G.
62.2 99.8 67.8 At5g40590 834057 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;POF O.I. C.G. H.G.
61.9 99.8 175.5 At1g15040 838069 glutamine amidotransferase-related F:hydrolase activity;P:glutamine metabolic process;C:cellular_component unknown;BOPAFM O.I. C.G. H.G.
57.0 99.8 18.5 At1g48690 841291 auxin-responsive GH3 family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POBM O.I. C.G. H.G.
52.0 99.8 28.6 At2g26290 817169 ARSK1 (root-specific kinase 1) F:kinase activity;P:response to salt stress, response to water deprivation, response to abscisic acid stimulus;C:unknown;MPOBFVA O.I. C.G. H.G.
50.4 99.8 116.0 At2g44380 819045 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;PMO O.I. C.G. H.G.
48.9 99.8 96.8 At3g08040 819995 FRD3 (FERRIC REDUCTASE DEFECTIVE 3) Encodes a member of the MATE (multidrug and toxin efflux family), expressed in roots but not shoots. Mutants accumulate excess iron, manganese and zinc, and express root Fe(III) chelatase activity even under iron sufficiency conditions. FRD3 is likely to function in root xylem loading of an iron chelator or other factor necessary for efficient iron uptake out of the xylem or apoplastic space and into leaf cells. O.I. C.G. H.G.
45.2 99.8 212.8 At3g07720 819963 kelch repeat-containing protein F:molecular_function unknown;P:unknown;C:nucleus, cytoplasm;MOPFBVA O.I. C.G. H.G.
45.1 99.8 33.4 At1g51860 841613 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
44.1 99.8 20.6 At2g31085 817664 CLE6 (CLAVATA3/ESR-RELATED 6) Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can replace CLV3 function in vivo. O.I. C.G. H.G.
43.6 99.8 59.0 At5g55170 835610 SUMO3 (SMALL UBIQUITIN-LIKE MODIFIER 3) Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. O.I. C.G. H.G.
42.8 99.8 46.8 At4g30420 829165 nodulin MtN21 family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;BOPAM O.I. C.G. H.G.
40.9 99.8 135.2 At1g02360 837724 chitinase, putative F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV O.I. C.G. H.G.
40.8 99.8 109.7 At3g25930 822190 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P O.I. C.G. H.G.
40.2 99.8 85.0 At5g43520 834372 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;POMF O.I. C.G. H.G.
40.0 99.8 39.9 At2g28780 817427 unknown protein F:unknown;P:biological_process unknown;C:mitochondrion;BPO O.I. C.G. H.G.
38.9 99.8 178.6 At5g10580 830923 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO O.I. C.G. H.G.
38.5 99.8 95.1 At5g45070 834538 AtPP2-A8 (Phloem protein 2-A8) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P O.I. C.G. H.G.
38.0 99.8 92.1 At2g32270 817787 ZIP3 A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. also response to iron deficiency. O.I. C.G. H.G.
37.9 99.8 77.7 At1g72200 843552 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
37.3 99.7 46.9 At2g24260 816961 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.
36.6 99.7 290.0 At1g19530 838540 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
36.3 99.7 151.1 At5g19890 832111 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:nucleus, cytoplasm;PFOB O.I. C.G. H.G.
36.1 99.7 186.6 At5g59520 836071 ZIP2 encodes a metal ion transporter whose expression is regulated by copper. O.I. C.G. H.G.
35.0 99.7 25.8 At5g47740 834825 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
34.0 99.7 295.3 At5g47450 834794 AtTIP2 Tonoplast intrinsic protein, transports ammonium (NH3) and methylammonium across the tonoplast membrane, gene expression shows diurnal regulation and is upregulated by ammonium (NH3). O.I. C.G. H.G.
33.8 99.7 104.9 At4g23700 828470 ATCHX17 (CATION/H+ EXCHANGER 17) member of Putative Na+/H+ antiporter family O.I. C.G. H.G.
33.7 99.7 179.1 At3g11340 820307 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOF O.I. C.G. H.G.
33.5 99.7 54.7 At3g14680 820696 CYP72A14 putative cytochrome P450 O.I. C.G. H.G.
33.2 99.7 49.8 At1g30760 839958 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM O.I. C.G. H.G.
32.6 99.7 72.3 At5g24090 832474 acidic endochitinase (CHIB1) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBMO O.I. C.G. H.G.
32.2 99.7 137.6 At2g39530 818538 integral membrane protein, putative F:molecular_function unknown;P:biological_process unknown;C:membrane;P O.I. C.G. H.G.
32.2 99.7 11.7 At2g37820 818359 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
32.1 99.7 320.9 At5g63600 836480 FLS5 (FLAVONOL SYNTHASE 5) encodes a protein whose sequence is similar to flavonol synthase O.I. C.G. H.G.
32.0 99.7 196.7 At5g59090 836026 ATSBT4.12 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, nucleus, cytoplasm;BPOFAM O.I. C.G. H.G.
31.9 99.7 45.4 At2g39040 818490 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO O.I. C.G. H.G.
31.6 99.7 240.6 At4g39675 830122 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
31.5 99.7 106.4 At1g19900 838578 glyoxal oxidase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFPO O.I. C.G. H.G.
31.0 99.7 192.3 At4g30450 829168 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPFVA O.I. C.G. H.G.
30.7 99.7 34.1 At3g02610 820709 acyl-[acyl-carrier-protein] desaturase/ oxidoreductase/ transition metal ion binding F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOM O.I. C.G. H.G.
30.5 99.7 22.5 At2g19060 816423 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
30.4 99.7 84.4 At3g29035 822547 ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3) Encodes a protein with transcription factor activity. Note: this protein (AT3G29035) on occasion has also been referred to as AtNAC3, not to be confused with the AtNAC3 found at locus AT3G15500. O.I. C.G. H.G.
30.3 99.7 65.3 At1g13590 837920 ATPSK1 (PHYTOSULFOKINE 1 PRECURSOR) Encodes a phytosulfokine-alpha (PSK) precursor, a unique plant peptide growth factor first described in Asparagus. O.I. C.G. H.G.
30.1 99.7 25.7 At1g31120 839997 KUP10 potassium transporter O.I. C.G. H.G.
29.8 99.7 63.4 At3g18200 821347 nodulin MtN21 family protein F:molecular_function unknown;P:unknown;C:endomembrane system, membrane;BOPAMF O.I. C.G. H.G.
29.8 99.7 48.7 At1g31885 840079 transporter F:transporter activity;P:transport;C:integral to membrane, membrane;BPOMFAV O.I. C.G. H.G.
29.4 99.7 90.4 At2g39430 818528 disease resistance-responsive protein-related / dirigent protein-related F:molecular_function unknown;P:lignan biosynthetic process;C:endomembrane system;PABFO O.I. C.G. H.G.
28.9 99.7 46.8 At3g59900 825160 ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE) Encodes ARGOS (Auxin-Regulated Gene Involved in Organ Size). Inducible by auxin. Involved in lateral organ size control. Transgenic plants expressing sense or antisense ARGOS cDNA display enlarged or reduced aerial organs, respectively. The alteration in organ size is attributable mainly to changes in cell number and the duration of organ growth. O.I. C.G. H.G.
28.4 99.7 226.0 At2g37750 818352 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
28.4 99.7 110.2 At3g22570 821829 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
28.3 99.7 14.1 At1g08670 837389 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
27.8 99.7 61.2 At2g17440 816250 leucine-rich repeat family protein F:protein binding;P:unknown;C:plasma membrane;MPBOFVA O.I. C.G. H.G.
27.6 99.7 315.1 At1g17860 838365 trypsin and protease inhibitor family protein / Kunitz family protein F:endopeptidase inhibitor activity;P:biological_process unknown;C:apoplast, cell wall;PO O.I. C.G. H.G.
27.6 99.7 76.3 At1g61590 842455 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA O.I. C.G. H.G.
27.1 99.7 268.7 At2g36100 818183 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
27.1 99.7 29.2 At3g02240 820386 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
27.1 99.7 23.0 At5g52790 835356 CBS domain-containing protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPA O.I. C.G. H.G.
27.0 99.7 19.7 At4g12330 826842 CYP706A7 member of CYP706A O.I. C.G. H.G.
26.9 99.7 124.6 At1g22440 838850 alcohol dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV O.I. C.G. H.G.
26.6 99.7 99.8 At4g15550 827229 IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE) UDP-glucose:indole-3-acetate beta-D-glucosyltransferase O.I. C.G. H.G.
26.5 99.7 76.0 At3g46900 823843 COPT2 encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast O.I. C.G. H.G.
26.2 99.7 33.0 At5g19970 832119 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
26.0 99.7 264.7 At2g21045 816639 - F:unknown;P:aging;C:unknown;BOPAFM O.I. C.G. H.G.
26.0 99.7 92.3 At1g23800 838991 ALDH2B7 Encodes a mitochondrial aldehyde dehydrogenase; nuclear gene for mitochondrial product. O.I. C.G. H.G.
25.9 99.7 166.6 At3g28740 822506 CYP81D1 Encodes a member of the cytochrome p450 family. Expression is upregulated in response to cis-jasmonate treatment. Overexpression induces synthesis of volatile compounds that affect chemical ecology and insect interactions. O.I. C.G. H.G.
25.7 99.7 24.6 At4g25090 828612 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA O.I. C.G. H.G.
25.3 99.6 111.7 At2g40940 818693 ERS1 (ETHYLENE RESPONSE SENSOR 1) Ethylene receptor, subfamily 1. Has histidine kinase activity. O.I. C.G. H.G.
25.1 99.6 52.2 At1g21140 838710 nodulin, putative F:unknown;P:biological_process unknown;C:unknown;BOPFA O.I. C.G. H.G.
25.1 99.6 43.0 At4g26220 828728 caffeoyl-CoA 3-O-methyltransferase, putative F:O-methyltransferase activity;P:unknown;C:cytosol;BOPMFA O.I. C.G. H.G.
24.8 99.6 34.4 At3g50640 824227 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
24.8 99.6 28.1 At1g50560 841477 CYP705A25 member of CYP705A O.I. C.G. H.G.
24.4 99.6 47.8 At4g40010 830162 SNRK2.7 (SNF1-RELATED PROTEIN KINASE 2.7) encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. O.I. C.G. H.G.
24.1 99.6 46.3 At3g19660 821503 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
23.6 99.6 55.1 At1g69526 843287 UbiE/COQ5 methyltransferase family protein F:methyltransferase activity;P:unknown;C:chloroplast;PBO O.I. C.G. H.G.
23.5 99.6 98.2 At5g50760 835148 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
23.4 99.6 391.8 At4g12550 826868 AIR1 isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus. O.I. C.G. H.G.
23.3 99.6 16.1 At2g36090 818182 F-box family protein F:unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
23.1 99.6 45.8 At4g32650 829400 ATKC1 (ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1) A member of the Shaker family of voltage-gated potassium channel subunits. Does not form functional potassium channel on its own. Involved in down-regulating AKT1 and KAT1 channel activity by forming heteromers with AKT1 or KAT1. O.I. C.G. H.G.
23.0 99.6 121.3 At3g45300 823668 IVD (ISOVALERYL-COA-DEHYDROGENASE) Encodes isovaleryl-coenzyme a dehydrogenase. O.I. C.G. H.G.
22.7 99.6 80.8 At5g56080 835707 NAS2 (NICOTIANAMINE SYNTHASE 2) Encodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc. O.I. C.G. H.G.
22.6 99.6 40.4 At4g37010 829855 caltractin, putative / centrin, putative F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB O.I. C.G. H.G.
22.4 99.6 57.6 At3g51330 824296 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOBV O.I. C.G. H.G.
22.3 99.6 291.5 At3g53980 824565 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
22.3 99.6 10.4 At1g27620 839654 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
22.2 99.6 161.9 At1g02900 839389 RALF1 (RAPID ALKALINIZATION FACTOR 1) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. C.G. H.G.
22.2 99.6 30.0 At5g22890 832353 zinc finger (C2H2 type) family protein F:transcription factor activity;P:response to chitin, regulation of transcription;C:intracellular;MOPF O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
302.8	100.0	45.3	At3g53200	824486	AtMYB27 (myb domain protein 27)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
201.3	100.0	62.9	At5g20820	832205	auxin-responsive protein-related	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
116.5	99.9	165.1	At1g49570	841381	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
106.7	99.9	72.6	At4g18510	827583	CLE2 (CLAVATA3/ESR-RELATED)	CLE2, putative ligand, member of large gene family homologous to Clavata3	O.I.	C.G.	H.G.
98.5	99.9	197.2	At4g28040	828919	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;PBOAM	O.I.	C.G.	H.G.
97.2	99.9	184.5	At2g39980	818586	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
96.2	99.9	118.1	At2g47160	819329	BOR1 (REQUIRES HIGH BORON 1)	Boron transporter. Protein accumulates in shoots and roots under conditions of boron deficiency and is degraded within several hours of restoring boron supply. Localized to the plasma membrane under B limitation, and to the cytoplasm after B application before degradation. Protein is transferred via the endosomes to the vacuole for degradation.	O.I.	C.G.	H.G.
93.1	99.9	261.3	At4g07820	826263	pathogenesis-related protein, putative	F:molecular_function unknown;P:unknown;C:endomembrane system, extracellular region;PMFBO	O.I.	C.G.	H.G.
88.9	99.9	41.0	At3g46270	823772	receptor protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPBOFVA	O.I.	C.G.	H.G.
86.4	99.9	147.7	At1g20160	838606	ATSBT5.2	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOFMA	O.I.	C.G.	H.G.
77.5	99.9	14.5	At1g61750	842472	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
68.9	99.9	30.3	At2g42850	818885	CYP718	member of CYP718	O.I.	C.G.	H.G.
68.8	99.9	94.7	At2g23620	816894	MES1 (METHYL ESTERASE 1)	Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES1 appears to be involved in MeSA hydrolysis in planta. Expression of MES1 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
63.9	99.8	23.4	At4g23510	828451	disease resistance protein (TIR class), putative	F:transmembrane receptor activity;P:defense response signaling pathway, resistance gene-dependent, signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBO	O.I.	C.G.	H.G.
63.5	99.8	18.9	At4g28410	828958	aminotransferase-related	F:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAF	O.I.	C.G.	H.G.
62.2	99.8	67.8	At5g40590	834057	DC1 domain-containing protein	F:unknown;P:unknown;C:cellular_component unknown;POF	O.I.	C.G.	H.G.
61.9	99.8	175.5	At1g15040	838069	glutamine amidotransferase-related	F:hydrolase activity;P:glutamine metabolic process;C:cellular_component unknown;BOPAFM	O.I.	C.G.	H.G.
57.0	99.8	18.5	At1g48690	841291	auxin-responsive GH3 family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POBM	O.I.	C.G.	H.G.
52.0	99.8	28.6	At2g26290	817169	ARSK1 (root-specific kinase 1)	F:kinase activity;P:response to salt stress, response to water deprivation, response to abscisic acid stimulus;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
50.4	99.8	116.0	At2g44380	819045	DC1 domain-containing protein	F:unknown;P:unknown;C:unknown;PMO	O.I.	C.G.	H.G.
48.9	99.8	96.8	At3g08040	819995	FRD3 (FERRIC REDUCTASE DEFECTIVE 3)	Encodes a member of the MATE (multidrug and toxin efflux family), expressed in roots but not shoots. Mutants accumulate excess iron, manganese and zinc, and express root Fe(III) chelatase activity even under iron sufficiency conditions. FRD3 is likely to function in root xylem loading of an iron chelator or other factor necessary for efficient iron uptake out of the xylem or apoplastic space and into leaf cells.	O.I.	C.G.	H.G.
45.2	99.8	212.8	At3g07720	819963	kelch repeat-containing protein	F:molecular_function unknown;P:unknown;C:nucleus, cytoplasm;MOPFBVA	O.I.	C.G.	H.G.
45.1	99.8	33.4	At1g51860	841613	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
44.1	99.8	20.6	At2g31085	817664	CLE6 (CLAVATA3/ESR-RELATED 6)	Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can replace CLV3 function in vivo.	O.I.	C.G.	H.G.
43.6	99.8	59.0	At5g55170	835610	SUMO3 (SMALL UBIQUITIN-LIKE MODIFIER 3)	Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets.	O.I.	C.G.	H.G.
42.8	99.8	46.8	At4g30420	829165	nodulin MtN21 family protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;BOPAM	O.I.	C.G.	H.G.
40.9	99.8	135.2	At1g02360	837724	chitinase, putative	F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV	O.I.	C.G.	H.G.
40.8	99.8	109.7	At3g25930	822190	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
40.2	99.8	85.0	At5g43520	834372	DC1 domain-containing protein	F:unknown;P:unknown;C:unknown;POMF	O.I.	C.G.	H.G.
40.0	99.8	39.9	At2g28780	817427	unknown protein	F:unknown;P:biological_process unknown;C:mitochondrion;BPO	O.I.	C.G.	H.G.
38.9	99.8	178.6	At5g10580	830923	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO	O.I.	C.G.	H.G.
38.5	99.8	95.1	At5g45070	834538	AtPP2-A8 (Phloem protein 2-A8)	F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P	O.I.	C.G.	H.G.
38.0	99.8	92.1	At2g32270	817787	ZIP3	A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. also response to iron deficiency.	O.I.	C.G.	H.G.
37.9	99.8	77.7	At1g72200	843552	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
37.3	99.7	46.9	At2g24260	816961	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.
36.6	99.7	290.0	At1g19530	838540	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
36.3	99.7	151.1	At5g19890	832111	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:nucleus, cytoplasm;PFOB	O.I.	C.G.	H.G.
36.1	99.7	186.6	At5g59520	836071	ZIP2	encodes a metal ion transporter whose expression is regulated by copper.	O.I.	C.G.	H.G.
35.0	99.7	25.8	At5g47740	834825	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
34.0	99.7	295.3	At5g47450	834794	AtTIP2	Tonoplast intrinsic protein, transports ammonium (NH3) and methylammonium across the tonoplast membrane, gene expression shows diurnal regulation and is upregulated by ammonium (NH3).	O.I.	C.G.	H.G.
33.8	99.7	104.9	At4g23700	828470	ATCHX17 (CATION/H+ EXCHANGER 17)	member of Putative Na+/H+ antiporter family	O.I.	C.G.	H.G.
33.7	99.7	179.1	At3g11340	820307	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOF	O.I.	C.G.	H.G.
33.5	99.7	54.7	At3g14680	820696	CYP72A14	putative cytochrome P450	O.I.	C.G.	H.G.
33.2	99.7	49.8	At1g30760	839958	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM	O.I.	C.G.	H.G.
32.6	99.7	72.3	At5g24090	832474	acidic endochitinase (CHIB1)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBMO	O.I.	C.G.	H.G.
32.2	99.7	137.6	At2g39530	818538	integral membrane protein, putative	F:molecular_function unknown;P:biological_process unknown;C:membrane;P	O.I.	C.G.	H.G.
32.2	99.7	11.7	At2g37820	818359	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
32.1	99.7	320.9	At5g63600	836480	FLS5 (FLAVONOL SYNTHASE 5)	encodes a protein whose sequence is similar to flavonol synthase	O.I.	C.G.	H.G.
32.0	99.7	196.7	At5g59090	836026	ATSBT4.12	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, nucleus, cytoplasm;BPOFAM	O.I.	C.G.	H.G.
31.9	99.7	45.4	At2g39040	818490	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO	O.I.	C.G.	H.G.
31.6	99.7	240.6	At4g39675	830122	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
31.5	99.7	106.4	At1g19900	838578	glyoxal oxidase-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFPO	O.I.	C.G.	H.G.
31.0	99.7	192.3	At4g30450	829168	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPFVA	O.I.	C.G.	H.G.
30.7	99.7	34.1	At3g02610	820709	acyl-[acyl-carrier-protein] desaturase/ oxidoreductase/ transition metal ion binding	F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOM	O.I.	C.G.	H.G.
30.5	99.7	22.5	At2g19060	816423	GDSL-motif lipase/hydrolase family protein	F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
30.4	99.7	84.4	At3g29035	822547	ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3)	Encodes a protein with transcription factor activity. Note: this protein (AT3G29035) on occasion has also been referred to as AtNAC3, not to be confused with the AtNAC3 found at locus AT3G15500.	O.I.	C.G.	H.G.
30.3	99.7	65.3	At1g13590	837920	ATPSK1 (PHYTOSULFOKINE 1 PRECURSOR)	Encodes a phytosulfokine-alpha (PSK) precursor, a unique plant peptide growth factor first described in Asparagus.	O.I.	C.G.	H.G.
30.1	99.7	25.7	At1g31120	839997	KUP10	potassium transporter	O.I.	C.G.	H.G.
29.8	99.7	63.4	At3g18200	821347	nodulin MtN21 family protein	F:molecular_function unknown;P:unknown;C:endomembrane system, membrane;BOPAMF	O.I.	C.G.	H.G.
29.8	99.7	48.7	At1g31885	840079	transporter	F:transporter activity;P:transport;C:integral to membrane, membrane;BPOMFAV	O.I.	C.G.	H.G.
29.4	99.7	90.4	At2g39430	818528	disease resistance-responsive protein-related / dirigent protein-related	F:molecular_function unknown;P:lignan biosynthetic process;C:endomembrane system;PABFO	O.I.	C.G.	H.G.
28.9	99.7	46.8	At3g59900	825160	ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE)	Encodes ARGOS (Auxin-Regulated Gene Involved in Organ Size). Inducible by auxin. Involved in lateral organ size control. Transgenic plants expressing sense or antisense ARGOS cDNA display enlarged or reduced aerial organs, respectively. The alteration in organ size is attributable mainly to changes in cell number and the duration of organ growth.	O.I.	C.G.	H.G.
28.4	99.7	226.0	At2g37750	818352	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
28.4	99.7	110.2	At3g22570	821829	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
28.3	99.7	14.1	At1g08670	837389	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
27.8	99.7	61.2	At2g17440	816250	leucine-rich repeat family protein	F:protein binding;P:unknown;C:plasma membrane;MPBOFVA	O.I.	C.G.	H.G.
27.6	99.7	315.1	At1g17860	838365	trypsin and protease inhibitor family protein / Kunitz family protein	F:endopeptidase inhibitor activity;P:biological_process unknown;C:apoplast, cell wall;PO	O.I.	C.G.	H.G.
27.6	99.7	76.3	At1g61590	842455	protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA	O.I.	C.G.	H.G.
27.1	99.7	268.7	At2g36100	818183	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.1	99.7	29.2	At3g02240	820386	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
27.1	99.7	23.0	At5g52790	835356	CBS domain-containing protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPA	O.I.	C.G.	H.G.
27.0	99.7	19.7	At4g12330	826842	CYP706A7	member of CYP706A	O.I.	C.G.	H.G.
26.9	99.7	124.6	At1g22440	838850	alcohol dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV	O.I.	C.G.	H.G.
26.6	99.7	99.8	At4g15550	827229	IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)	UDP-glucose:indole-3-acetate beta-D-glucosyltransferase	O.I.	C.G.	H.G.
26.5	99.7	76.0	At3g46900	823843	COPT2	encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast	O.I.	C.G.	H.G.
26.2	99.7	33.0	At5g19970	832119	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
26.0	99.7	264.7	At2g21045	816639	-	F:unknown;P:aging;C:unknown;BOPAFM	O.I.	C.G.	H.G.
26.0	99.7	92.3	At1g23800	838991	ALDH2B7	Encodes a mitochondrial aldehyde dehydrogenase; nuclear gene for mitochondrial product.	O.I.	C.G.	H.G.
25.9	99.7	166.6	At3g28740	822506	CYP81D1	Encodes a member of the cytochrome p450 family. Expression is upregulated in response to cis-jasmonate treatment. Overexpression induces synthesis of volatile compounds that affect chemical ecology and insect interactions.	O.I.	C.G.	H.G.
25.7	99.7	24.6	At4g25090	828612	respiratory burst oxidase, putative / NADPH oxidase, putative	F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA	O.I.	C.G.	H.G.
25.3	99.6	111.7	At2g40940	818693	ERS1 (ETHYLENE RESPONSE SENSOR 1)	Ethylene receptor, subfamily 1. Has histidine kinase activity.	O.I.	C.G.	H.G.
25.1	99.6	52.2	At1g21140	838710	nodulin, putative	F:unknown;P:biological_process unknown;C:unknown;BOPFA	O.I.	C.G.	H.G.
25.1	99.6	43.0	At4g26220	828728	caffeoyl-CoA 3-O-methyltransferase, putative	F:O-methyltransferase activity;P:unknown;C:cytosol;BOPMFA	O.I.	C.G.	H.G.
24.8	99.6	34.4	At3g50640	824227	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
24.8	99.6	28.1	At1g50560	841477	CYP705A25	member of CYP705A	O.I.	C.G.	H.G.
24.4	99.6	47.8	At4g40010	830162	SNRK2.7 (SNF1-RELATED PROTEIN KINASE 2.7)	encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.	O.I.	C.G.	H.G.
24.1	99.6	46.3	At3g19660	821503	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
23.6	99.6	55.1	At1g69526	843287	UbiE/COQ5 methyltransferase family protein	F:methyltransferase activity;P:unknown;C:chloroplast;PBO	O.I.	C.G.	H.G.
23.5	99.6	98.2	At5g50760	835148	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
23.4	99.6	391.8	At4g12550	826868	AIR1	isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus.	O.I.	C.G.	H.G.
23.3	99.6	16.1	At2g36090	818182	F-box family protein	F:unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
23.1	99.6	45.8	At4g32650	829400	ATKC1 (ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1)	A member of the Shaker family of voltage-gated potassium channel subunits. Does not form functional potassium channel on its own. Involved in down-regulating AKT1 and KAT1 channel activity by forming heteromers with AKT1 or KAT1.	O.I.	C.G.	H.G.
23.0	99.6	121.3	At3g45300	823668	IVD (ISOVALERYL-COA-DEHYDROGENASE)	Encodes isovaleryl-coenzyme a dehydrogenase.	O.I.	C.G.	H.G.
22.7	99.6	80.8	At5g56080	835707	NAS2 (NICOTIANAMINE SYNTHASE 2)	Encodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc.	O.I.	C.G.	H.G.
22.6	99.6	40.4	At4g37010	829855	caltractin, putative / centrin, putative	F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB	O.I.	C.G.	H.G.
22.4	99.6	57.6	At3g51330	824296	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOBV	O.I.	C.G.	H.G.
22.3	99.6	291.5	At3g53980	824565	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
22.3	99.6	10.4	At1g27620	839654	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
22.2	99.6	161.9	At1g02900	839389	RALF1 (RAPID ALKALINIZATION FACTOR 1)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	C.G.	H.G.
22.2	99.6	30.0	At5g22890	832353	zinc finger (C2H2 type) family protein	F:transcription factor activity;P:response to chitin, regulation of transcription;C:intracellular;MOPF	O.I.	C.G.	H.G.

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GSM ID	GSM179961
Assay name	Arabidopsis roots, ethylene treatment, replica 2
GSE experiment	GSE7432: Ethylene and auxin interactions in the roots of Arabidopsis seedlings

Microarray experiments to specifically-expressed genes

GSM ID GSM179961 Assay name Arabidopsis roots, ethylene treatment, replica 2 GSE experiment GSE7432: Ethylene and auxin interactions in the roots of Arabidopsis seedlings

GSM ID GSM179961

Assay name Arabidopsis roots, ethylene treatment, replica 2

GSE experiment GSE7432: Ethylene and auxin interactions in the roots of Arabidopsis seedlings