CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM179959

Assay name Arabidopsis roots, air treatment, replica 2

GSE experiment GSE7432: Ethylene and auxin interactions in the roots of Arabidopsis seedlings

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
111.6 99.9 25.1 At4g28410 828958 aminotransferase-related F:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAF O.I. C.G. H.G.
109.0 99.9 58.6 At3g02240 820386 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
96.1 99.9 16.1 At1g61750 842472 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
87.1 99.9 252.7 At4g07820 826263 pathogenesis-related protein, putative F:molecular_function unknown;P:unknown;C:endomembrane system, extracellular region;PMFBO O.I. C.G. H.G.
86.0 99.9 65.2 At4g18510 827583 CLE2 (CLAVATA3/ESR-RELATED) CLE2, putative ligand, member of large gene family homologous to Clavata3 O.I. C.G. H.G.
85.1 99.9 146.5 At1g20160 838606 ATSBT5.2 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOFMA O.I. C.G. H.G.
58.1 99.8 47.9 At2g35000 818064 zinc finger (C3HC4-type RING finger) family protein E3 ligase-like protein induced by chitin oligomers. O.I. C.G. H.G.
57.1 99.8 95.3 At1g72200 843552 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
54.1 99.8 32.4 At5g52790 835356 CBS domain-containing protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPA O.I. C.G. H.G.
51.6 99.8 74.1 At3g01260 821171 aldose 1-epimerase/ carbohydrate binding / catalytic/ isomerase F:carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVA O.I. C.G. H.G.
50.8 99.8 27.0 At4g12330 826842 CYP706A7 member of CYP706A O.I. C.G. H.G.
49.3 99.8 39.7 At5g07680 830661 ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
48.5 99.8 113.7 At2g44380 819045 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;PMO O.I. C.G. H.G.
47.6 99.8 238.5 At4g30450 829168 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPFVA O.I. C.G. H.G.
47.6 99.8 42.5 At3g02610 820709 acyl-[acyl-carrier-protein] desaturase/ oxidoreductase/ transition metal ion binding F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOM O.I. C.G. H.G.
47.2 99.8 347.7 At5g47450 834794 AtTIP2 Tonoplast intrinsic protein, transports ammonium (NH3) and methylammonium across the tonoplast membrane, gene expression shows diurnal regulation and is upregulated by ammonium (NH3). O.I. C.G. H.G.
45.7 99.8 32.5 At3g02850 821052 SKOR member of Stelar K+ outward rectifying channel (SKOR) family. Mediates the delivery of K+ from stelar cells to the xylem in the roots towards the shoot. mRNA accumulation is modulated by abscisic acid. K+ gating activity is modulated by external and internal K+. O.I. C.G. H.G.
45.5 99.8 43.5 At5g19970 832119 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
43.4 99.8 56.9 At1g30760 839958 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM O.I. C.G. H.G.
42.0 99.8 44.9 At3g50640 824227 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
41.8 99.8 93.9 At1g61590 842455 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA O.I. C.G. H.G.
41.7 99.8 40.7 At2g28780 817427 unknown protein F:unknown;P:biological_process unknown;C:mitochondrion;BPO O.I. C.G. H.G.
41.2 99.8 363.5 At5g63600 836480 FLS5 (FLAVONOL SYNTHASE 5) encodes a protein whose sequence is similar to flavonol synthase O.I. C.G. H.G.
40.1 99.8 31.5 At1g51860 841613 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
39.7 99.8 206.2 At3g28740 822506 CYP81D1 Encodes a member of the cytochrome p450 family. Expression is upregulated in response to cis-jasmonate treatment. Overexpression induces synthesis of volatile compounds that affect chemical ecology and insect interactions. O.I. C.G. H.G.
37.4 99.7 81.9 At5g43520 834372 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;POMF O.I. C.G. H.G.
37.3 99.7 104.9 At3g25930 822190 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P O.I. C.G. H.G.
36.6 99.7 54.0 At5g55170 835610 SUMO3 (SMALL UBIQUITIN-LIKE MODIFIER 3) Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. O.I. C.G. H.G.
36.5 99.7 90.2 At2g32270 817787 ZIP3 A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. also response to iron deficiency. O.I. C.G. H.G.
35.8 99.7 72.1 At2g47160 819329 BOR1 (REQUIRES HIGH BORON 1) Boron transporter. Protein accumulates in shoots and roots under conditions of boron deficiency and is degraded within several hours of restoring boron supply. Localized to the plasma membrane under B limitation, and to the cytoplasm after B application before degradation. Protein is transferred via the endosomes to the vacuole for degradation. O.I. C.G. H.G.
35.3 99.7 118.0 At4g28040 828919 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;PBOAM O.I. C.G. H.G.
34.9 99.7 125.1 At1g02360 837724 chitinase, putative F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV O.I. C.G. H.G.
34.9 99.7 74.8 At5g24090 832474 acidic endochitinase (CHIB1) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBMO O.I. C.G. H.G.
34.8 99.7 169.1 At5g10580 830923 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO O.I. C.G. H.G.
34.8 99.7 30.4 At5g06800 830570 myb family transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;POFM O.I. C.G. H.G.
34.7 99.7 477.8 At4g12550 826868 AIR1 isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus. O.I. C.G. H.G.
33.8 99.7 23.7 At2g19060 816423 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
32.8 99.7 79.2 At3g08040 819995 FRD3 (FERRIC REDUCTASE DEFECTIVE 3) Encodes a member of the MATE (multidrug and toxin efflux family), expressed in roots but not shoots. Mutants accumulate excess iron, manganese and zinc, and express root Fe(III) chelatase activity even under iron sufficiency conditions. FRD3 is likely to function in root xylem loading of an iron chelator or other factor necessary for efficient iron uptake out of the xylem or apoplastic space and into leaf cells. O.I. C.G. H.G.
32.7 99.7 244.6 At4g39675 830122 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
32.7 99.7 15.1 At1g08670 837389 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
32.4 99.7 180.2 At3g07720 819963 kelch repeat-containing protein F:molecular_function unknown;P:unknown;C:nucleus, cytoplasm;MOPFBVA O.I. C.G. H.G.
31.8 99.7 64.4 At2g23620 816894 MES1 (METHYL ESTERASE 1) Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES1 appears to be involved in MeSA hydrolysis in planta. Expression of MES1 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
31.2 99.7 63.4 At1g69526 843287 UbiE/COQ5 methyltransferase family protein F:methyltransferase activity;P:unknown;C:chloroplast;PBO O.I. C.G. H.G.
31.0 99.7 343.9 At3g53980 824565 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
30.8 99.7 114.7 At3g22570 821829 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
29.6 99.7 230.8 At2g37750 818352 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
28.8 99.7 38.8 At2g28160 817362 FRU (FER-LIKE REGULATOR OF IRON UPTAKE) Encodes a putative transcription factor that regulates iron uptake responses. mRNA is detected in the outer cell layers of the root and accumulates in response to iron deficiency. The expression of many iron-regulated genes is dependent on FIT1. It specifically regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation.Similar to FER in tomato and is a regulator of iron uptake. O.I. C.G. H.G.
28.6 99.7 14.6 At2g02610 814790 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
28.5 99.7 151.7 At3g25190 822112 nodulin, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA O.I. C.G. H.G.
27.9 99.7 276.3 At3g01190 821314 peroxidase 27 (PER27) (P27) (PRXR7) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
27.5 99.7 314.4 At1g17860 838365 trypsin and protease inhibitor family protein / Kunitz family protein F:endopeptidase inhibitor activity;P:biological_process unknown;C:apoplast, cell wall;PO O.I. C.G. H.G.
27.4 99.7 29.6 At1g50560 841477 CYP705A25 member of CYP705A O.I. C.G. H.G.
27.3 99.7 59.9 At4g37060 829860 PLP5 (PATATIN-LIKE PROTEIN 5) F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMF O.I. C.G. H.G.
27.3 99.7 44.4 At4g37010 829855 caltractin, putative / centrin, putative F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB O.I. C.G. H.G.
27.1 99.7 82.0 At3g24290 822017 AMT1 F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPA O.I. C.G. H.G.
27.0 99.7 160.2 At3g11340 820307 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOF O.I. C.G. H.G.
26.8 99.7 16.1 At2g31085 817664 CLE6 (CLAVATA3/ESR-RELATED 6) Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can replace CLV3 function in vivo. O.I. C.G. H.G.
26.7 99.7 76.3 At3g46900 823843 COPT2 encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast O.I. C.G. H.G.
26.5 99.7 15.2 At4g00910 827985 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOF O.I. C.G. H.G.
25.8 99.7 92.0 At1g23800 838991 ALDH2B7 Encodes a mitochondrial aldehyde dehydrogenase; nuclear gene for mitochondrial product. O.I. C.G. H.G.
25.1 99.6 33.8 At2g14100 815896 CYP705A13 a member of the cytochrome P450 family O.I. C.G. H.G.
24.8 99.6 38.6 At2g29330 817482 TRI (tropinone reductase) F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
24.7 99.6 57.7 At2g17440 816250 leucine-rich repeat family protein F:protein binding;P:unknown;C:plasma membrane;MPBOFVA O.I. C.G. H.G.
24.4 99.6 44.3 At5g47950 834846 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
24.3 99.6 70.6 At5g23840 832449 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
24.3 99.6 34.6 At1g76560 843989 CP12-3 F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO O.I. C.G. H.G.
24.0 99.6 152.2 At5g59520 836071 ZIP2 encodes a metal ion transporter whose expression is regulated by copper. O.I. C.G. H.G.
24.0 99.6 59.5 At3g51330 824296 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOBV O.I. C.G. H.G.
23.8 99.6 46.5 At4g32650 829400 ATKC1 (ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1) A member of the Shaker family of voltage-gated potassium channel subunits. Does not form functional potassium channel on its own. Involved in down-regulating AKT1 and KAT1 channel activity by forming heteromers with AKT1 or KAT1. O.I. C.G. H.G.
23.7 99.6 24.5 At4g15400 827208 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
23.2 99.6 128.4 At4g19690 827713 IRT1 (iron-regulated transporter 1) Fe(II) transport protein (IRT1) O.I. C.G. H.G.
23.1 99.6 37.0 At2g24260 816961 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.
22.8 99.6 247.7 At2g21045 816639 - F:unknown;P:aging;C:unknown;BOPAFM O.I. C.G. H.G.
22.7 99.6 40.9 At5g24410 832512 glucosamine/galactosamine-6-phosphate isomerase-related F:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFP O.I. C.G. H.G.
22.6 99.6 107.7 At2g37870 818363 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
21.9 99.6 192.4 At4g23690 828469 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
21.9 99.6 24.1 At4g15340 827200 ATPEN1 (ARABIDOPSIS THALIANA PENTACYCLIC TRITERPENE SYNTHASE 1) Encodes a protein that catalyzes the production of the tricyclic triterpene arabidiol when expressed in yeast. O.I. C.G. H.G.
21.8 99.6 41.6 At1g31885 840079 transporter F:transporter activity;P:transport;C:integral to membrane, membrane;BPOMFAV O.I. C.G. H.G.
21.6 99.6 78.9 At5g56080 835707 NAS2 (NICOTIANAMINE SYNTHASE 2) Encodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc. O.I. C.G. H.G.
21.5 99.6 114.3 At5g65210 836646 TGA1 F:transcription factor activity, calmodulin binding, DNA binding;P:defense response to bacterium;C:nucleus;POM O.I. C.G. H.G.
21.4 99.6 112.1 At2g39530 818538 integral membrane protein, putative F:molecular_function unknown;P:biological_process unknown;C:membrane;P O.I. C.G. H.G.
21.3 99.6 70.7 At5g45070 834538 AtPP2-A8 (Phloem protein 2-A8) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P O.I. C.G. H.G.
21.1 99.6 86.1 At1g43790 840976 TED6 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 6) F:molecular_function unknown;P:secondary cell wall biogenesis;C:cellular_component unknown;P O.I. C.G. H.G.
21.0 99.6 88.5 At4g33110 829448 coclaurine N-methyltransferase, putative F:cyclopropane-fatty-acyl-phospholipid synthase activity, (S)-coclaurine-N-methyltransferase activity;P:lipid biosynthetic process;C:plasma membrane;OBPFMA O.I. C.G. H.G.
20.7 99.6 25.2 At5g24140 832479 SQP2 Encodes a protein with similarity to squalene monoxygenases. O.I. C.G. H.G.
20.5 99.6 21.9 At4g25090 828612 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA O.I. C.G. H.G.
20.2 99.6 51.1 At3g23800 821962 SBP3 (selenium-binding protein 3) F:selenium binding;P:unknown;C:cellular_component unknown;OMBPA O.I. C.G. H.G.
19.8 99.6 53.7 At5g42500 834257 disease resistance-responsive family protein F:molecular_function unknown;P:defense response;C:endomembrane system;P O.I. C.G. H.G.
19.6 99.6 180.6 At1g05260 837028 RCI3 (RARE COLD INDUCIBLE GENE 3) Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings. O.I. C.G. H.G.
19.5 99.6 33.6 At2g42060 818806 CHP-rich zinc finger protein, putative F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PM O.I. C.G. H.G.
19.4 99.6 227.2 At2g36100 818183 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
19.3 99.6 178.2 At3g21770 821731 peroxidase 30 (PER30) (P30) (PRXR9) F:transferase activity, transferring glycosyl groups, peroxidase activity;P:response to oxidative stress;C:cell wall, nucleus, cytoplasm, plant-type cell wall;PFOBM O.I. C.G. H.G.
19.1 99.6 91.8 At3g62270 825400 anion exchange family protein F:anion exchanger activity;P:anion transport;C:integral to membrane, membrane;MFPOBV O.I. C.G. H.G.
19.0 99.5 181.4 At5g60660 836187 PIP2 F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAV O.I. C.G. H.G.
18.8 99.5 52.7 At2g44300 819038 lipid transfer protein-related F:lipid binding;P:lipid transport;C:plasma membrane, anchored to membrane;P O.I. C.G. H.G.
18.5 99.5 149.7 At5g59090 836026 ATSBT4.12 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, nucleus, cytoplasm;BPOFAM O.I. C.G. H.G.
18.5 99.5 65.9 At3g29035 822547 ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3) Encodes a protein with transcription factor activity. Note: this protein (AT3G29035) on occasion has also been referred to as AtNAC3, not to be confused with the AtNAC3 found at locus AT3G15500. O.I. C.G. H.G.
18.4 99.5 50.3 At5g49710 835034 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPMOF O.I. C.G. H.G.
18.0 99.5 95.6 At4g33550 829494 lipid binding F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
18.0 99.5 25.8 At3g49840 824146 unknown protein F:unknown;P:unknown;C:endomembrane system;PBM O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
111.6	99.9	25.1	At4g28410	828958	aminotransferase-related	F:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAF	O.I.	C.G.	H.G.
109.0	99.9	58.6	At3g02240	820386	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
96.1	99.9	16.1	At1g61750	842472	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
87.1	99.9	252.7	At4g07820	826263	pathogenesis-related protein, putative	F:molecular_function unknown;P:unknown;C:endomembrane system, extracellular region;PMFBO	O.I.	C.G.	H.G.
86.0	99.9	65.2	At4g18510	827583	CLE2 (CLAVATA3/ESR-RELATED)	CLE2, putative ligand, member of large gene family homologous to Clavata3	O.I.	C.G.	H.G.
85.1	99.9	146.5	At1g20160	838606	ATSBT5.2	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOFMA	O.I.	C.G.	H.G.
58.1	99.8	47.9	At2g35000	818064	zinc finger (C3HC4-type RING finger) family protein	E3 ligase-like protein induced by chitin oligomers.	O.I.	C.G.	H.G.
57.1	99.8	95.3	At1g72200	843552	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
54.1	99.8	32.4	At5g52790	835356	CBS domain-containing protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPA	O.I.	C.G.	H.G.
51.6	99.8	74.1	At3g01260	821171	aldose 1-epimerase/ carbohydrate binding / catalytic/ isomerase	F:carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVA	O.I.	C.G.	H.G.
50.8	99.8	27.0	At4g12330	826842	CYP706A7	member of CYP706A	O.I.	C.G.	H.G.
49.3	99.8	39.7	At5g07680	830661	ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
48.5	99.8	113.7	At2g44380	819045	DC1 domain-containing protein	F:unknown;P:unknown;C:unknown;PMO	O.I.	C.G.	H.G.
47.6	99.8	238.5	At4g30450	829168	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPFVA	O.I.	C.G.	H.G.
47.6	99.8	42.5	At3g02610	820709	acyl-[acyl-carrier-protein] desaturase/ oxidoreductase/ transition metal ion binding	F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOM	O.I.	C.G.	H.G.
47.2	99.8	347.7	At5g47450	834794	AtTIP2	Tonoplast intrinsic protein, transports ammonium (NH3) and methylammonium across the tonoplast membrane, gene expression shows diurnal regulation and is upregulated by ammonium (NH3).	O.I.	C.G.	H.G.
45.7	99.8	32.5	At3g02850	821052	SKOR	member of Stelar K+ outward rectifying channel (SKOR) family. Mediates the delivery of K+ from stelar cells to the xylem in the roots towards the shoot. mRNA accumulation is modulated by abscisic acid. K+ gating activity is modulated by external and internal K+.	O.I.	C.G.	H.G.
45.5	99.8	43.5	At5g19970	832119	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
43.4	99.8	56.9	At1g30760	839958	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM	O.I.	C.G.	H.G.
42.0	99.8	44.9	At3g50640	824227	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
41.8	99.8	93.9	At1g61590	842455	protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA	O.I.	C.G.	H.G.
41.7	99.8	40.7	At2g28780	817427	unknown protein	F:unknown;P:biological_process unknown;C:mitochondrion;BPO	O.I.	C.G.	H.G.
41.2	99.8	363.5	At5g63600	836480	FLS5 (FLAVONOL SYNTHASE 5)	encodes a protein whose sequence is similar to flavonol synthase	O.I.	C.G.	H.G.
40.1	99.8	31.5	At1g51860	841613	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
39.7	99.8	206.2	At3g28740	822506	CYP81D1	Encodes a member of the cytochrome p450 family. Expression is upregulated in response to cis-jasmonate treatment. Overexpression induces synthesis of volatile compounds that affect chemical ecology and insect interactions.	O.I.	C.G.	H.G.
37.4	99.7	81.9	At5g43520	834372	DC1 domain-containing protein	F:unknown;P:unknown;C:unknown;POMF	O.I.	C.G.	H.G.
37.3	99.7	104.9	At3g25930	822190	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
36.6	99.7	54.0	At5g55170	835610	SUMO3 (SMALL UBIQUITIN-LIKE MODIFIER 3)	Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets.	O.I.	C.G.	H.G.
36.5	99.7	90.2	At2g32270	817787	ZIP3	A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. also response to iron deficiency.	O.I.	C.G.	H.G.
35.8	99.7	72.1	At2g47160	819329	BOR1 (REQUIRES HIGH BORON 1)	Boron transporter. Protein accumulates in shoots and roots under conditions of boron deficiency and is degraded within several hours of restoring boron supply. Localized to the plasma membrane under B limitation, and to the cytoplasm after B application before degradation. Protein is transferred via the endosomes to the vacuole for degradation.	O.I.	C.G.	H.G.
35.3	99.7	118.0	At4g28040	828919	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;PBOAM	O.I.	C.G.	H.G.
34.9	99.7	125.1	At1g02360	837724	chitinase, putative	F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV	O.I.	C.G.	H.G.
34.9	99.7	74.8	At5g24090	832474	acidic endochitinase (CHIB1)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBMO	O.I.	C.G.	H.G.
34.8	99.7	169.1	At5g10580	830923	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO	O.I.	C.G.	H.G.
34.8	99.7	30.4	At5g06800	830570	myb family transcription factor	F:transcription factor activity;P:regulation of transcription;C:unknown;POFM	O.I.	C.G.	H.G.
34.7	99.7	477.8	At4g12550	826868	AIR1	isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus.	O.I.	C.G.	H.G.
33.8	99.7	23.7	At2g19060	816423	GDSL-motif lipase/hydrolase family protein	F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
32.8	99.7	79.2	At3g08040	819995	FRD3 (FERRIC REDUCTASE DEFECTIVE 3)	Encodes a member of the MATE (multidrug and toxin efflux family), expressed in roots but not shoots. Mutants accumulate excess iron, manganese and zinc, and express root Fe(III) chelatase activity even under iron sufficiency conditions. FRD3 is likely to function in root xylem loading of an iron chelator or other factor necessary for efficient iron uptake out of the xylem or apoplastic space and into leaf cells.	O.I.	C.G.	H.G.
32.7	99.7	244.6	At4g39675	830122	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
32.7	99.7	15.1	At1g08670	837389	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
32.4	99.7	180.2	At3g07720	819963	kelch repeat-containing protein	F:molecular_function unknown;P:unknown;C:nucleus, cytoplasm;MOPFBVA	O.I.	C.G.	H.G.
31.8	99.7	64.4	At2g23620	816894	MES1 (METHYL ESTERASE 1)	Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES1 appears to be involved in MeSA hydrolysis in planta. Expression of MES1 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
31.2	99.7	63.4	At1g69526	843287	UbiE/COQ5 methyltransferase family protein	F:methyltransferase activity;P:unknown;C:chloroplast;PBO	O.I.	C.G.	H.G.
31.0	99.7	343.9	At3g53980	824565	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
30.8	99.7	114.7	At3g22570	821829	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
29.6	99.7	230.8	At2g37750	818352	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
28.8	99.7	38.8	At2g28160	817362	FRU (FER-LIKE REGULATOR OF IRON UPTAKE)	Encodes a putative transcription factor that regulates iron uptake responses. mRNA is detected in the outer cell layers of the root and accumulates in response to iron deficiency. The expression of many iron-regulated genes is dependent on FIT1. It specifically regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation.Similar to FER in tomato and is a regulator of iron uptake.	O.I.	C.G.	H.G.
28.6	99.7	14.6	At2g02610	814790	DC1 domain-containing protein	F:unknown;P:unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
28.5	99.7	151.7	At3g25190	822112	nodulin, putative	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA	O.I.	C.G.	H.G.
27.9	99.7	276.3	At3g01190	821314	peroxidase 27 (PER27) (P27) (PRXR7)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
27.5	99.7	314.4	At1g17860	838365	trypsin and protease inhibitor family protein / Kunitz family protein	F:endopeptidase inhibitor activity;P:biological_process unknown;C:apoplast, cell wall;PO	O.I.	C.G.	H.G.
27.4	99.7	29.6	At1g50560	841477	CYP705A25	member of CYP705A	O.I.	C.G.	H.G.
27.3	99.7	59.9	At4g37060	829860	PLP5 (PATATIN-LIKE PROTEIN 5)	F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMF	O.I.	C.G.	H.G.
27.3	99.7	44.4	At4g37010	829855	caltractin, putative / centrin, putative	F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB	O.I.	C.G.	H.G.
27.1	99.7	82.0	At3g24290	822017	AMT1	F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPA	O.I.	C.G.	H.G.
27.0	99.7	160.2	At3g11340	820307	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOF	O.I.	C.G.	H.G.
26.8	99.7	16.1	At2g31085	817664	CLE6 (CLAVATA3/ESR-RELATED 6)	Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can replace CLV3 function in vivo.	O.I.	C.G.	H.G.
26.7	99.7	76.3	At3g46900	823843	COPT2	encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast	O.I.	C.G.	H.G.
26.5	99.7	15.2	At4g00910	827985	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOF	O.I.	C.G.	H.G.
25.8	99.7	92.0	At1g23800	838991	ALDH2B7	Encodes a mitochondrial aldehyde dehydrogenase; nuclear gene for mitochondrial product.	O.I.	C.G.	H.G.
25.1	99.6	33.8	At2g14100	815896	CYP705A13	a member of the cytochrome P450 family	O.I.	C.G.	H.G.
24.8	99.6	38.6	At2g29330	817482	TRI (tropinone reductase)	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
24.7	99.6	57.7	At2g17440	816250	leucine-rich repeat family protein	F:protein binding;P:unknown;C:plasma membrane;MPBOFVA	O.I.	C.G.	H.G.
24.4	99.6	44.3	At5g47950	834846	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
24.3	99.6	70.6	At5g23840	832449	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
24.3	99.6	34.6	At1g76560	843989	CP12-3	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO	O.I.	C.G.	H.G.
24.0	99.6	152.2	At5g59520	836071	ZIP2	encodes a metal ion transporter whose expression is regulated by copper.	O.I.	C.G.	H.G.
24.0	99.6	59.5	At3g51330	824296	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOBV	O.I.	C.G.	H.G.
23.8	99.6	46.5	At4g32650	829400	ATKC1 (ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1)	A member of the Shaker family of voltage-gated potassium channel subunits. Does not form functional potassium channel on its own. Involved in down-regulating AKT1 and KAT1 channel activity by forming heteromers with AKT1 or KAT1.	O.I.	C.G.	H.G.
23.7	99.6	24.5	At4g15400	827208	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
23.2	99.6	128.4	At4g19690	827713	IRT1 (iron-regulated transporter 1)	Fe(II) transport protein (IRT1)	O.I.	C.G.	H.G.
23.1	99.6	37.0	At2g24260	816961	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.
22.8	99.6	247.7	At2g21045	816639	-	F:unknown;P:aging;C:unknown;BOPAFM	O.I.	C.G.	H.G.
22.7	99.6	40.9	At5g24410	832512	glucosamine/galactosamine-6-phosphate isomerase-related	F:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFP	O.I.	C.G.	H.G.
22.6	99.6	107.7	At2g37870	818363	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
21.9	99.6	192.4	At4g23690	828469	disease resistance-responsive family protein / dirigent family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
21.9	99.6	24.1	At4g15340	827200	ATPEN1 (ARABIDOPSIS THALIANA PENTACYCLIC TRITERPENE SYNTHASE 1)	Encodes a protein that catalyzes the production of the tricyclic triterpene arabidiol when expressed in yeast.	O.I.	C.G.	H.G.
21.8	99.6	41.6	At1g31885	840079	transporter	F:transporter activity;P:transport;C:integral to membrane, membrane;BPOMFAV	O.I.	C.G.	H.G.
21.6	99.6	78.9	At5g56080	835707	NAS2 (NICOTIANAMINE SYNTHASE 2)	Encodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc.	O.I.	C.G.	H.G.
21.5	99.6	114.3	At5g65210	836646	TGA1	F:transcription factor activity, calmodulin binding, DNA binding;P:defense response to bacterium;C:nucleus;POM	O.I.	C.G.	H.G.
21.4	99.6	112.1	At2g39530	818538	integral membrane protein, putative	F:molecular_function unknown;P:biological_process unknown;C:membrane;P	O.I.	C.G.	H.G.
21.3	99.6	70.7	At5g45070	834538	AtPP2-A8 (Phloem protein 2-A8)	F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P	O.I.	C.G.	H.G.
21.1	99.6	86.1	At1g43790	840976	TED6 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 6)	F:molecular_function unknown;P:secondary cell wall biogenesis;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.0	99.6	88.5	At4g33110	829448	coclaurine N-methyltransferase, putative	F:cyclopropane-fatty-acyl-phospholipid synthase activity, (S)-coclaurine-N-methyltransferase activity;P:lipid biosynthetic process;C:plasma membrane;OBPFMA	O.I.	C.G.	H.G.
20.7	99.6	25.2	At5g24140	832479	SQP2	Encodes a protein with similarity to squalene monoxygenases.	O.I.	C.G.	H.G.
20.5	99.6	21.9	At4g25090	828612	respiratory burst oxidase, putative / NADPH oxidase, putative	F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA	O.I.	C.G.	H.G.
20.2	99.6	51.1	At3g23800	821962	SBP3 (selenium-binding protein 3)	F:selenium binding;P:unknown;C:cellular_component unknown;OMBPA	O.I.	C.G.	H.G.
19.8	99.6	53.7	At5g42500	834257	disease resistance-responsive family protein	F:molecular_function unknown;P:defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
19.6	99.6	180.6	At1g05260	837028	RCI3 (RARE COLD INDUCIBLE GENE 3)	Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings.	O.I.	C.G.	H.G.
19.5	99.6	33.6	At2g42060	818806	CHP-rich zinc finger protein, putative	F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
19.4	99.6	227.2	At2g36100	818183	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.3	99.6	178.2	At3g21770	821731	peroxidase 30 (PER30) (P30) (PRXR9)	F:transferase activity, transferring glycosyl groups, peroxidase activity;P:response to oxidative stress;C:cell wall, nucleus, cytoplasm, plant-type cell wall;PFOBM	O.I.	C.G.	H.G.
19.1	99.6	91.8	At3g62270	825400	anion exchange family protein	F:anion exchanger activity;P:anion transport;C:integral to membrane, membrane;MFPOBV	O.I.	C.G.	H.G.
19.0	99.5	181.4	At5g60660	836187	PIP2	F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAV	O.I.	C.G.	H.G.
18.8	99.5	52.7	At2g44300	819038	lipid transfer protein-related	F:lipid binding;P:lipid transport;C:plasma membrane, anchored to membrane;P	O.I.	C.G.	H.G.
18.5	99.5	149.7	At5g59090	836026	ATSBT4.12	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, nucleus, cytoplasm;BPOFAM	O.I.	C.G.	H.G.
18.5	99.5	65.9	At3g29035	822547	ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3)	Encodes a protein with transcription factor activity. Note: this protein (AT3G29035) on occasion has also been referred to as AtNAC3, not to be confused with the AtNAC3 found at locus AT3G15500.	O.I.	C.G.	H.G.
18.4	99.5	50.3	At5g49710	835034	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPMOF	O.I.	C.G.	H.G.
18.0	99.5	95.6	At4g33550	829494	lipid binding	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
18.0	99.5	25.8	At3g49840	824146	unknown protein	F:unknown;P:unknown;C:endomembrane system;PBM	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM179959
Assay name	Arabidopsis roots, air treatment, replica 2
GSE experiment	GSE7432: Ethylene and auxin interactions in the roots of Arabidopsis seedlings

Microarray experiments to specifically-expressed genes

GSM ID GSM179959 Assay name Arabidopsis roots, air treatment, replica 2 GSE experiment GSE7432: Ethylene and auxin interactions in the roots of Arabidopsis seedlings

GSM ID GSM179959

Assay name Arabidopsis roots, air treatment, replica 2

GSE experiment GSE7432: Ethylene and auxin interactions in the roots of Arabidopsis seedlings