CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM177119

Assay name ga-1 (SALK_109115) mock treated for 1 hr, replicate 1

GSE experiment GSE7353: Early GA response genes in Arabidopsis thaliana

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
29.0 99.7 41.8 At3g44970 823632 cytochrome P450 family protein F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:endomembrane system;MPBFOAV O.I. C.G. H.G.
22.7 99.6 182.3 At4g21870 828276 26.5 kDa class P-related heat shock protein (HSP26.5-P) F:unknown;P:response to heat;C:cellular_component unknown;PBOFA O.I. C.G. H.G.
14.7 99.4 67.4 At1g15550 838125 GA3OX1 (GIBBERELLIN 3-OXIDASE 1) Involved in later steps of the gibberellic acid biosynthetic pathway. Activated by AGAMOUS in a cal-1, ap1-1 background. Deletion of 208 bp from -1016 to -809 (Δ-808) resulted in loss of GA-negative feedback (this sequence, which contains a 43-bp sequence GNFEI, was shown to be sufficient for GA-negative feedback). O.I. C.G. H.G.
12.1 99.3 23.9 At2g23130 816845 AGP17 (ARABINOGALACTAN PROTEIN 17) AGP17 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP18 and AGP19, other lysine-rich AGPs. 84% of its proline residues are hydroxylated to hydroproline and its heavy glycosylation accounts for appr. 69% of the molecular weight. The main glycosyl residues are arabinose (30.1%) and galactose (55.1%). Glycosyl linkages are consistent with type II arabinogalactans. AGP17 is predicted to have a glycosylphosphatidylinositol (GPI)anchor and is localized to the plasma membrane and Hechtian strands. It is expressed in young/old leaves, shoots, suspension cultures and flowers. O.I. C.G. H.G.
11.1 99.2 13.7 At4g11460 826751 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
10.1 99.2 61.1 At1g52100 841640 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PFO O.I. C.G. H.G.
6.4 185.8 At3g44890 823623 RPL9 (RIBOSOMAL PROTEIN L9) Plastid ribosomal protein CL9 O.I. C.G. H.G.
6.4 61.4 At2g22230 816756 beta-hydroxyacyl-ACP dehydratase, putative F:3-hydroxybutyryl-[acyl-carrier-protein] dehydratase activity, 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity;P:fatty acid biosynthetic process;C:cell wall, chloroplast;BOPM O.I. C.G. H.G.
3.7 259.7 At4g03520 825653 ATHM2 chloroplast localized thioredoxin, similar to prokaryotic types. O.I. C.G. H.G.
3.7 235.9 At2g21170 816652 TIM (TRIOSEPHOSPHATE ISOMERASE) Encodes triosephosphate isomerase. O.I. C.G. H.G.

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