Microarray experiments to specifically-expressed genes

GSM ID GSM173651
Assay name mARF10 rep3
GSE experiment GSE7227: microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
115.699.963.3At2g26040817145Bet v I allergen family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
106.899.942.4At1g80340844374GA3OX2 (GIBBERELLIN 3-OXIDASE 2)Encodes a protein with gibberellin 3 β-hydroxylase activity. The protein was heterologously expressed in E. coli and shown to catalyze the hydroxylation of both GA9 and GA20.O.I.C.G.H.G.
91.599.9115.8At5g13870831233EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4)EXGT-A4, endoxyloglucan transferase,O.I.C.G.H.G.
81.799.961.6At3g48700824031ATCXE13 (ARABIDOPSIS THALIANA CARBOXYESTERASE 13)F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAVO.I.C.G.H.G.
76.099.943.8At4g38210829977ATEXPA20 (ARABIDOPSIS THALIANA EXPANSIN A20)expansin -like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
68.499.9303.4At5g14450831296GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:plant-type cell wall;PBFOMO.I.C.G.H.G.
64.799.8129.1At1g33790840271jacalin lectin family proteinF:unknown;P:biological_process unknown;C:chloroplast;POO.I.C.G.H.G.
58.599.886.9At3g23800821962SBP3 (selenium-binding protein 3)F:selenium binding;P:unknown;C:cellular_component unknown;OMBPAO.I.C.G.H.G.
52.999.8207.2At5g56260835725dimethylmenaquinone methyltransferase family proteinF:ribonuclease inhibitor activity;P:regulation of RNA metabolic process;C:cellular_component unknown;BOPAFMO.I.C.G.H.G.
52.299.857.5At1g29080839783peptidase C1A papain family proteinF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
44.599.8252.4At5g08260830722scpl35 (serine carboxypeptidase-like 35)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
43.799.8249.1At3g45310823669cysteine proteinase, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAFO.I.C.G.H.G.
43.799.8118.5At1g43780840974scpl44 (serine carboxypeptidase-like 44)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOO.I.C.G.H.G.
41.199.826.0At2g40220818614ABI4 (ABA INSENSITIVE 4)encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings.O.I.C.G.H.G.
38.999.8214.3At4g12910826903scpl20 (serine carboxypeptidase-like 20)F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOBO.I.C.G.H.G.
33.099.7164.9At2g47780819390rubber elongation factor (REF) protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
32.799.7222.2At5g05290830411ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
31.799.7200.0At1g02640837940BXL2 (BETA-XYLOSIDASE 2)encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.O.I.C.G.H.G.
30.799.750.6At1g60090842304BGLU4 (BETA GLUCOSIDASE 4)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAO.I.C.G.H.G.
29.999.712.7At1g65340842842CYP96A3member of CYP96AO.I.C.G.H.G.
29.699.730.4At1g48660841288auxin-responsive GH3 family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;OPBMFO.I.C.G.H.G.
29.499.7301.2At5g03860831690MLS (MALATE SYNTHASE)Encodes a protein with malate synthase activity.O.I.C.G.H.G.
29.499.7121.9At1g64970842805G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)gamma-tocopherol methyltransferase (g-TMT) mRNA, nuclear; mutant has Deficient in alpha and beta tocopherol; Accumulates gamma tocopherol in leavesO.I.C.G.H.G.
29.199.778.1At5g14570831308ATNRT2.7 (Arabidopsis thaliana high affinity nitrate transporter 2.7)Encodes ATNRT2.7, a nitrate transporter that controls nitrate content in seeds. Expression is detected in reproductive organs and peaks in seeds. Localized to the vacuolar membrane.O.I.C.G.H.G.
28.899.716.2At5g17490831615RGL3 (RGA-LIKE PROTEIN 3)DELLA subfamily member involved in GA signal transductionO.I.C.G.H.G.
27.999.759.6At3g59650825134mitochondrial ribosomal protein L51/S25/CI-B8 family proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MFOPO.I.C.G.H.G.
27.299.7119.3At4g16210827314ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)F:catalytic activity;P:metabolic process;C:peroxisome;BOMFPAO.I.C.G.H.G.
26.699.7189.6At1g73120843643unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:unknown;PO.I.C.G.H.G.
26.299.774.1At5g19520832072MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9)F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:nucleus, plasma membrane, membrane;BOFPAVO.I.C.G.H.G.
25.799.7234.2At4g36880829841CP1 (CYSTEINE PROTEINASE1)F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
25.199.6226.0At2g30970817648ASP1 (ASPARTATE AMINOTRANSFERASE 1)ASPARTATE AMINOTRANSFERASE 1O.I.C.G.H.G.
24.799.632.3At3g18510821381unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
24.599.67.9At1g47620841171CYP96A8member of CYP96AO.I.C.G.H.G.
23.899.666.7At4g36910829844LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)Has a cystathionine Beta-synthase domain.O.I.C.G.H.G.
23.599.6105.1At4g26210828727mitochondrial ATP synthase g subunit family proteinF:hydrogen ion transmembrane transporter activity;P:proton transport, ATP synthesis coupled proton transport;C:mitochondrial proton-transporting ATP synthase complex, coupling factor F(o);POO.I.C.G.H.G.
22.799.633.5At5g44460834473calcium-binding protein, putativeF:calcium ion binding;P:response to cadmium ion;C:unknown;MPFOBO.I.C.G.H.G.
22.599.612.8At1g72570843589DNA binding / transcription factorF:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBVO.I.C.G.H.G.
22.199.625.9At4g24660828568ATHB22 (HOMEOBOX PROTEIN 22)F:transcription factor activity, DNA binding;P:embryonic development ending in seed dormancy;C:nucleus;PMO.I.C.G.H.G.
21.599.623.9At5g24990832569unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
21.499.6238.9At5g42890834300SCP2 (STEROL CARRIER PROTEIN 2)F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPBO.I.C.G.H.G.
21.499.672.7At3g47800823934aldose 1-epimerase family proteinF:aldose 1-epimerase activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;BOMFPAO.I.C.G.H.G.
21.499.630.5At4g16230827317carboxylesterase/ hydrolase, acting on ester bondsF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
21.399.6119.1At2g37640818341EXP3member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
21.299.6220.9At3g06860819870MFP2 (MULTIFUNCTIONAL PROTEIN 2)Encodes a multifunctional protein. Involved in peroxisomal fatty acid beta oxidation. Loss-of-function mutant lacks hydroxyacyl-CoA dehydrogenase activity and have reduced levels of long-chain enoyl-CoA hydratase activity. The mutant has fewer but larger peroxisomes.O.I.C.G.H.G.
21.099.6185.0At2g22780816808PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1)encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.O.I.C.G.H.G.
20.999.6150.5At4g30810829204scpl29 (serine carboxypeptidase-like 29)F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOBO.I.C.G.H.G.
20.999.683.8At2g19590816478ACO1 (ACC OXIDASE 1)encodes a protein whose sequence is similar to 1-aminocyclopropane-1-carboxylate oxidaseO.I.C.G.H.G.
20.599.6123.2At3g02790820985zinc finger (C2H2 type) family proteinF:transcription factor activity;P:regulation of transcription;C:intracellular;POO.I.C.G.H.G.
20.099.6118.9At1g43800840977acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putativeF:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:membrane;PBOMO.I.C.G.H.G.
19.499.651.5At3g05810819750unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
18.799.552.3At2g23110816843-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
18.399.5116.6At1g49410841365TOM6 (translocase of the outer mitochondrial membrane 6)F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
18.099.5154.2At1g15500838120ATNTT2F:ATP:ADP antiporter activity;P:transport;C:mitochondrion, chloroplast, plastid, chloroplast envelope, cytoplasm;BOPFMO.I.C.G.H.G.
17.799.5386.8At3g21720821726ICL (ISOCITRATE LYASE)Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL).O.I.C.G.H.G.
17.499.5187.5At1g06290837140ACX3 (ACYL-COA OXIDASE 3)Encodes an acyl-CoA oxidase with specificity for medium chain fatty acids.O.I.C.G.H.G.
17.399.546.2At2g27775817324unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
17.399.525.9At3g15357820774unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;OMBFPVAO.I.C.G.H.G.
16.999.556.7At5g63810836501BGAL10 (beta-galactosidase 10)member of Glycoside Hydrolase Family 35O.I.C.G.H.G.
16.899.586.5At4g3080082920340S ribosomal protein S11 (RPS11B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;MOBAFPO.I.C.G.H.G.
16.799.530.2At1g64185842723lactoylglutathione lyase family protein / glyoxalase I family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;PBOO.I.C.G.H.G.
16.599.525.3At1g2310083891810 kDa chaperonin, putativeF:ATP binding;P:protein folding;C:mitochondrion;BOMPFVO.I.C.G.H.G.
15.999.5118.8At5g13780831223GCN5-related N-acetyltransferase, putativeF:N-acetyltransferase activity;P:metabolic process;C:endomembrane system;MOFBAPO.I.C.G.H.G.
15.999.542.0At5g64650836586ribosomal protein L17 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular;BOFMPO.I.C.G.H.G.
15.799.525.9At4g36420829794ribosomal protein L12 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMFO.I.C.G.H.G.
15.699.573.5At5g46180834660delta-OATornithine delta-aminotransferaseO.I.C.G.H.G.
15.299.470.5At2g24280816963serine carboxypeptidase S28 family proteinF:serine-type peptidase activity, serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system, lysosome;MOFPBO.I.C.G.H.G.
15.199.4207.7At5g20950832220glycosyl hydrolase family 3 proteinF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cell wall, membrane, plant-type cell wall;BOFPAMO.I.C.G.H.G.
15.199.4128.9At5g01040831877LAC8 (laccase 8)putative laccase, knockout mutant showed early floweringO.I.C.G.H.G.
15.199.423.0At1g72070843538DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMPFAVO.I.C.G.H.G.
15.099.416.9At4g39500830104CYP96A11member of CYP96AO.I.C.G.H.G.
14.999.473.6At5g23310832395FSD3 (FE SUPEROXIDE DISMUTASE 3)Fe superoxide dismutaseO.I.C.G.H.G.
14.599.422.9At4g29430829064rps15ae (ribosomal protein S15A E)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, mitochondrion, cytosolic ribosome, vacuole;BOMAPFO.I.C.G.H.G.
14.599.49.6At1g10000837535nucleic acid binding / ribonuclease HF:ribonuclease H activity, nucleic acid binding;P:biological_process unknown;C:unknown;PAMOO.I.C.G.H.G.
14.499.48.8At3g481303769680-ribosomal protein L13 homologO.I.C.G.H.G.
14.399.480.2At1g10522837593unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
14.299.456.4At1g76300843963SmD3 (snRNP core protein SmD3)F:molecular_function unknown;P:unknown;C:nuclear body, nucleolus, small nucleolar ribonucleoprotein complex, nucleus;MFOPO.I.C.G.H.G.
14.299.416.7At4g37580829913HLS1 (HOOKLESS 1)involved in apical hook development. putative N-acetyltransferaseO.I.C.G.H.G.
14.099.444.0At3g5517082468360S ribosomal protein L35 (RPL35C)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOBAFPO.I.C.G.H.G.
13.899.4102.4At4g14440827089HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1)encodes a cytosolic delta3, delta2-enoyl CoA isomerase, involved in unsaturated fatty acid degradationO.I.C.G.H.G.
13.899.439.8At3g03450821251RGL2 (RGA-LIKE 2)Encodes a DELLA protein, a member of the GRAS superfamily of putative transcription factors. DELLA proteins restrain the cell proliferation and expansion that drives plant growth. Negative regulator of the response to GA in controlling seed germination. GA triggers the degradation of RGL2 protein in a process blocked by both proteasome inhibitors and serine/threonine phosphatase inhibitors. The protein undergoes degradation in response to GA via the 26S proteasome. RGL2 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Regulates GA-promoted seed germination. Involved in flower and fruit development.O.I.C.G.H.G.
13.899.415.0At5g41650834167lactoylglutathione lyase family protein / glyoxalase I family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;PBOO.I.C.G.H.G.
13.899.412.2At2g41340818732RPB5D (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, D)NRPE5-like protein of unknown function; homologous to budding yeast RPB5O.I.C.G.H.G.
13.799.436.3At3g05190819683aminotransferase class IV family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;OBPAFMO.I.C.G.H.G.
13.599.4212.6At1g54000841838myrosinase-associated protein, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuolar membrane, plasma membrane, vacuole, plant-type cell wall, plant-type vacuole;PBOFMO.I.C.G.H.G.
13.599.4183.1At3g54110824578PUMP1 (PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1)Member of Uncoupling protein PUMP2 family. Encodes a mitochondrial uncoupling protein AtUCP1 involved in maintain the redox poise of the mitochondrial electron transport chain to facilitate photosynthetic metabolism. Disruption of UCP1 results in a photosynthetic phenotype. Specifically there is a restriction in photorespiration with a decrease in the rate of oxidation of photorespiratory glycine in the mitochondrion. This change leads to an associated reduced photosynthetic carbon assimilation rate.O.I.C.G.H.G.
13.499.411.9At3g51410824304unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBFOO.I.C.G.H.G.
13.399.445.4At2g29540817503ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT)RNA polymerase I(A) and III(C) 14 kDa subunitO.I.C.G.H.G.
13.199.476.3At3g23730821955xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBOO.I.C.G.H.G.
13.199.468.2At5g50370835104adenylate kinase, putativeF:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, adenylate kinase activity, ATP binding, phosphotransferase activity, phosphate group as acceptor;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:mitochondrion, plasma membrane, plastid;BOMFPAO.I.C.G.H.G.
13.199.424.3At4g11060826707MTSSB (mitochondrially targeted single-stranded DNA binding protein)F:single-stranded DNA binding;P:unknown;C:unknown;BOMPVO.I.C.G.H.G.
13.099.473.3At1g17020838272SRG1 (SENESCENCE-RELATED GENE 1)Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.O.I.C.G.H.G.
13.099.442.1At1g14300837991bindingF:binding;P:biological_process unknown;C:cellular_component unknown;FMPOO.I.C.G.H.G.
13.099.422.4At5g67060836841HEC1 (HECATE 1)F:transcription factor activity;P:transmitting tissue development, carpel formation, regulation of transcription;C:nucleus;PMBOFAO.I.C.G.H.G.
12.999.339.7At4g21490828234NDB3F:NADH dehydrogenase activity;P:unknown;C:unknown;BOFPAMO.I.C.G.H.G.
12.899.3127.5At1g49600841384ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a)F:RNA binding;P:unknown;C:unknown;MOPFBVAO.I.C.G.H.G.
12.899.394.7At2g42740818874RPL16Aencodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment.O.I.C.G.H.G.
12.699.3161.9At2g2158081669640S ribosomal protein S25 (RPS25B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, plasma membrane;MFPOAO.I.C.G.H.G.
12.699.328.4At1g71100843450RSW10 (RADIAL SWELLING 10)Encodes a ribose 5-phosphate isomerase involved in the formation of uridine used for the synthesis of UDP-sugars. Mutants of this gene are affected in cellulose biosynthesis.O.I.C.G.H.G.
12.699.328.2At5g52370835313unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
12.599.3138.3At2g42790818879CSY3 (citrate synthase 3)Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development.O.I.C.G.H.G.



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