Microarray experiments to specifically-expressed genes

GSM ID GSM173621
Assay name Col-0 rep1
GSE experiment GSE7227: microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
157.399.951.4At1g80340844374GA3OX2 (GIBBERELLIN 3-OXIDASE 2)Encodes a protein with gibberellin 3 β-hydroxylase activity. The protein was heterologously expressed in E. coli and shown to catalyze the hydroxylation of both GA9 and GA20.O.I.C.G.H.G.
111.499.962.1At2g26040817145Bet v I allergen family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
75.099.9317.7At5g14450831296GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:plant-type cell wall;PBFOMO.I.C.G.H.G.
59.299.887.4At3g23800821962SBP3 (selenium-binding protein 3)F:selenium binding;P:unknown;C:cellular_component unknown;OMBPAO.I.C.G.H.G.
56.499.8134.7At1g43780840974scpl44 (serine carboxypeptidase-like 44)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOO.I.C.G.H.G.
56.499.891.0At5g13870831233EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4)EXGT-A4, endoxyloglucan transferase,O.I.C.G.H.G.
56.299.851.1At3g48700824031ATCXE13 (ARABIDOPSIS THALIANA CARBOXYESTERASE 13)F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAVO.I.C.G.H.G.
47.099.8258.3At3g45310823669cysteine proteinase, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAFO.I.C.G.H.G.
45.799.834.0At4g38210829977ATEXPA20 (ARABIDOPSIS THALIANA EXPANSIN A20)expansin -like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
45.199.8107.7At1g33790840271jacalin lectin family proteinF:unknown;P:biological_process unknown;C:chloroplast;POO.I.C.G.H.G.
42.599.826.5At2g40220818614ABI4 (ABA INSENSITIVE 4)encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings.O.I.C.G.H.G.
41.899.8184.1At5g56260835725dimethylmenaquinone methyltransferase family proteinF:ribonuclease inhibitor activity;P:regulation of RNA metabolic process;C:cellular_component unknown;BOPAFMO.I.C.G.H.G.
39.199.8236.6At5g08260830722scpl35 (serine carboxypeptidase-like 35)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
33.699.7130.2At1g64970842805G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)gamma-tocopherol methyltransferase (g-TMT) mRNA, nuclear; mutant has Deficient in alpha and beta tocopherol; Accumulates gamma tocopherol in leavesO.I.C.G.H.G.
30.799.7143.0At2g37640818341EXP3member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
30.099.7157.2At2g47780819390rubber elongation factor (REF) protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
28.699.7297.1At5g03860831690MLS (MALATE SYNTHASE)Encodes a protein with malate synthase activity.O.I.C.G.H.G.
28.299.7182.6At4g12910826903scpl20 (serine carboxypeptidase-like 20)F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOBO.I.C.G.H.G.
27.799.741.9At1g29080839783peptidase C1A papain family proteinF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
27.499.747.8At1g60090842304BGLU4 (BETA GLUCOSIDASE 4)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAO.I.C.G.H.G.
27.399.7241.5At4g36880829841CP1 (CYSTEINE PROTEINASE1)F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
26.899.7190.4At1g73120843643unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:unknown;PO.I.C.G.H.G.
26.199.7181.6At1g02640837940BXL2 (BETA-XYLOSIDASE 2)encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.O.I.C.G.H.G.
24.399.6222.0At2g30970817648ASP1 (ASPARTATE AMINOTRANSFERASE 1)ASPARTATE AMINOTRANSFERASE 1O.I.C.G.H.G.
23.999.670.8At5g14570831308ATNRT2.7 (Arabidopsis thaliana high affinity nitrate transporter 2.7)Encodes ATNRT2.7, a nitrate transporter that controls nitrate content in seeds. Expression is detected in reproductive organs and peaks in seeds. Localized to the vacuolar membrane.O.I.C.G.H.G.
23.399.669.9At5g19520832072MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9)F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:nucleus, plasma membrane, membrane;BOFPAVO.I.C.G.H.G.
23.399.627.0At1g48660841288auxin-responsive GH3 family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;OPBMFO.I.C.G.H.G.
22.399.614.3At5g17490831615RGL3 (RGA-LIKE PROTEIN 3)DELLA subfamily member involved in GA signal transductionO.I.C.G.H.G.
22.099.6101.6At4g26210828727mitochondrial ATP synthase g subunit family proteinF:hydrogen ion transmembrane transporter activity;P:proton transport, ATP synthesis coupled proton transport;C:mitochondrial proton-transporting ATP synthase complex, coupling factor F(o);POO.I.C.G.H.G.
21.999.6181.7At5g05290830411ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
21.599.649.8At3g03450821251RGL2 (RGA-LIKE 2)Encodes a DELLA protein, a member of the GRAS superfamily of putative transcription factors. DELLA proteins restrain the cell proliferation and expansion that drives plant growth. Negative regulator of the response to GA in controlling seed germination. GA triggers the degradation of RGL2 protein in a process blocked by both proteasome inhibitors and serine/threonine phosphatase inhibitors. The protein undergoes degradation in response to GA via the 26S proteasome. RGL2 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Regulates GA-promoted seed germination. Involved in flower and fruit development.O.I.C.G.H.G.
20.599.6103.5At4g16210827314ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)F:catalytic activity;P:metabolic process;C:peroxisome;BOMFPAO.I.C.G.H.G.
20.199.6232.0At5g42890834300SCP2 (STEROL CARRIER PROTEIN 2)F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPBO.I.C.G.H.G.
19.699.6178.7At2g22780816808PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1)encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.O.I.C.G.H.G.
19.699.624.3At4g24660828568ATHB22 (HOMEOBOX PROTEIN 22)F:transcription factor activity, DNA binding;P:embryonic development ending in seed dormancy;C:nucleus;PMO.I.C.G.H.G.
19.499.6404.6At3g21720821726ICL (ISOCITRATE LYASE)Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL).O.I.C.G.H.G.
19.499.6211.1At3g06860819870MFP2 (MULTIFUNCTIONAL PROTEIN 2)Encodes a multifunctional protein. Involved in peroxisomal fatty acid beta oxidation. Loss-of-function mutant lacks hydroxyacyl-CoA dehydrogenase activity and have reduced levels of long-chain enoyl-CoA hydratase activity. The mutant has fewer but larger peroxisomes.O.I.C.G.H.G.
19.399.610.2At1g65340842842CYP96A3member of CYP96AO.I.C.G.H.G.
18.699.548.7At3g59650825134mitochondrial ribosomal protein L51/S25/CI-B8 family proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MFOPO.I.C.G.H.G.
18.399.558.5At4g36910829844LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)Has a cystathionine Beta-synthase domain.O.I.C.G.H.G.
17.999.589.6At1g10522837593unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
17.899.5139.2At4g30810829204scpl29 (serine carboxypeptidase-like 29)F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOBO.I.C.G.H.G.
17.899.588.9At4g3080082920340S ribosomal protein S11 (RPS11B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;MOBAFPO.I.C.G.H.G.
17.799.521.7At5g24990832569unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
17.299.5110.5At1g43800840977acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putativeF:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:membrane;PBOMO.I.C.G.H.G.
16.799.511.0At1g72570843589DNA binding / transcription factorF:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBVO.I.C.G.H.G.
16.699.56.2At2g18620816377geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putativeF:unknown;P:isoprenoid biosynthetic process;C:unknown;OBPFAMVO.I.C.G.H.G.
16.399.563.6At3g47800823934aldose 1-epimerase family proteinF:aldose 1-epimerase activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;BOMFPAO.I.C.G.H.G.
16.199.5109.4At1g49410841365TOM6 (translocase of the outer mitochondrial membrane 6)F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
16.199.544.5At2g27775817324unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
16.099.555.3At5g63810836501BGAL10 (beta-galactosidase 10)member of Glycoside Hydrolase Family 35O.I.C.G.H.G.
16.099.526.4At4g16230827317carboxylesterase/ hydrolase, acting on ester bondsF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
15.999.525.9At3g18510821381unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
15.699.573.7At5g46180834660delta-OATornithine delta-aminotransferaseO.I.C.G.H.G.
15.599.575.1At5g23310832395FSD3 (FE SUPEROXIDE DISMUTASE 3)Fe superoxide dismutaseO.I.C.G.H.G.
15.599.523.7At4g29430829064rps15ae (ribosomal protein S15A E)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, mitochondrion, cytosolic ribosome, vacuole;BOMAPFO.I.C.G.H.G.
15.399.424.3At1g2310083891810 kDa chaperonin, putativeF:ATP binding;P:protein folding;C:mitochondrion;BOMPFVO.I.C.G.H.G.
15.299.427.4At5g44460834473calcium-binding protein, putativeF:calcium ion binding;P:response to cadmium ion;C:unknown;MPFOBO.I.C.G.H.G.
15.099.438.0At3g05190819683aminotransferase class IV family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;OBPAFMO.I.C.G.H.G.
15.099.428.7At1g64185842723lactoylglutathione lyase family protein / glyoxalase I family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;PBOO.I.C.G.H.G.
14.699.470.1At2g19590816478ACO1 (ACC OXIDASE 1)encodes a protein whose sequence is similar to 1-aminocyclopropane-1-carboxylate oxidaseO.I.C.G.H.G.
14.699.426.4At5g45920834632carboxylesterase/ hydrolase/ hydrolase, acting on ester bondsF:hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:cellular_component unknown;FPBMOO.I.C.G.H.G.
14.599.4203.5At5g20950832220glycosyl hydrolase family 3 proteinF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cell wall, membrane, plant-type cell wall;BOFPAMO.I.C.G.H.G.
14.399.46.0At1g47620841171CYP96A8member of CYP96AO.I.C.G.H.G.
14.199.4102.5At5g45670834606GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
14.099.4167.9At1g06290837140ACX3 (ACYL-COA OXIDASE 3)Encodes an acyl-CoA oxidase with specificity for medium chain fatty acids.O.I.C.G.H.G.
13.999.4135.6At1g15500838120ATNTT2F:ATP:ADP antiporter activity;P:transport;C:mitochondrion, chloroplast, plastid, chloroplast envelope, cytoplasm;BOPFMO.I.C.G.H.G.
13.599.4167.9At2g2158081669640S ribosomal protein S25 (RPS25B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, plasma membrane;MFPOAO.I.C.G.H.G.
13.599.421.8At1g72070843538DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMPFAVO.I.C.G.H.G.
13.499.462.6At5g45650834605subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.C.G.H.G.
13.499.444.4At2g23110816843-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.499.437.9At4g24110828511unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
13.399.422.7At5g67060836841HEC1 (HECATE 1)F:transcription factor activity;P:transmitting tissue development, carpel formation, regulation of transcription;C:nucleus;PMBOFAO.I.C.G.H.G.
13.399.415.9At4g39500830104CYP96A11member of CYP96AO.I.C.G.H.G.
13.299.414.7At5g41650834167lactoylglutathione lyase family protein / glyoxalase I family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;PBOO.I.C.G.H.G.
13.199.498.6At3g02790820985zinc finger (C2H2 type) family proteinF:transcription factor activity;P:regulation of transcription;C:intracellular;POO.I.C.G.H.G.
13.099.433.1At4g11120826713translation elongation factor Ts (EF-Ts), putativeF:translation elongation factor activity;P:translational elongation;C:mitochondrion;BOPMFO.I.C.G.H.G.
13.099.424.1At4g11060826707MTSSB (mitochondrially targeted single-stranded DNA binding protein)F:single-stranded DNA binding;P:unknown;C:unknown;BOMPVO.I.C.G.H.G.
12.699.320.5At5g27410832800aminotransferase class IV family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;OBPAFMO.I.C.G.H.G.
12.599.3134.9At3g44750823605HDA3 (HISTONE DEACETYLASE 3)Encodes a histone deacetylase. Controls the development of adaxial/abaxial leaf polarity. Two lines with RNAi-directed against this gene show reduced Agrobacterium-mediated DNA transformation of the roots.O.I.C.G.H.G.
12.599.366.5At5g50370835104adenylate kinase, putativeF:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, adenylate kinase activity, ATP binding, phosphotransferase activity, phosphate group as acceptor;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:mitochondrion, plasma membrane, plastid;BOMFPAO.I.C.G.H.G.
12.599.346.6At5g38890833880exoribonuclease-relatedF:RNA binding;P:biological_process unknown;C:cellular_component unknown;FMAOPO.I.C.G.H.G.
12.499.397.0At4g14440827089HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1)encodes a cytosolic delta3, delta2-enoyl CoA isomerase, involved in unsaturated fatty acid degradationO.I.C.G.H.G.
12.499.391.3At5g66985836833unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
12.499.352.6At3g04770819637RPSAb (40S ribosomal protein SA B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, chloroplast, membrane;BMOAFPO.I.C.G.H.G.
12.499.340.0At1g69526843287UbiE/COQ5 methyltransferase family proteinF:methyltransferase activity;P:unknown;C:chloroplast;PBOO.I.C.G.H.G.
12.499.311.5At3g51410824304unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBFOO.I.C.G.H.G.
12.399.340.9At3g05810819750unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
12.399.325.2At5g09980830859PROPEP4 (Elicitor peptide 4 precursor)F:molecular_function unknown;P:response to jasmonic acid stimulus;C:endomembrane system;PO.I.C.G.H.G.
12.299.327.9At1g71100843450RSW10 (RADIAL SWELLING 10)Encodes a ribose 5-phosphate isomerase involved in the formation of uridine used for the synthesis of UDP-sugars. Mutants of this gene are affected in cellulose biosynthesis.O.I.C.G.H.G.
12.199.3121.0At3g19130821447ATRBP47B (RNA-binding protein 47B)F:RNA binding;P:unknown;C:unknown;MOPFBAVO.I.C.G.H.G.
12.199.373.3At3g23730821955xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBOO.I.C.G.H.G.
12.199.334.0At1g35550840451elongation factor Tu C-terminal domain-containing proteinF:GTP binding, translation elongation factor activity;P:translational elongation;C:cellular_component unknown;MFOPAO.I.C.G.H.G.
12.099.3172.3At3g54110824578PUMP1 (PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1)Member of Uncoupling protein PUMP2 family. Encodes a mitochondrial uncoupling protein AtUCP1 involved in maintain the redox poise of the mitochondrial electron transport chain to facilitate photosynthetic metabolism. Disruption of UCP1 results in a photosynthetic phenotype. Specifically there is a restriction in photorespiration with a decrease in the rate of oxidation of photorespiratory glycine in the mitochondrion. This change leads to an associated reduced photosynthetic carbon assimilation rate.O.I.C.G.H.G.
12.099.3123.2At1g49600841384ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a)F:RNA binding;P:unknown;C:unknown;MOPFBVAO.I.C.G.H.G.
12.099.351.7At1g76300843963SmD3 (snRNP core protein SmD3)F:molecular_function unknown;P:unknown;C:nuclear body, nucleolus, small nucleolar ribonucleoprotein complex, nucleus;MFOPO.I.C.G.H.G.
12.099.343.0At2g29540817503ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT)RNA polymerase I(A) and III(C) 14 kDa subunitO.I.C.G.H.G.
11.999.3199.6At1g54000841838myrosinase-associated protein, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuolar membrane, plasma membrane, vacuole, plant-type cell wall, plant-type vacuole;PBOFMO.I.C.G.H.G.
11.999.383.2At3g5749082491640S ribosomal protein S2 (RPS2D)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, intracellular, membrane;BOMAFPO.I.C.G.H.G.
11.999.322.5At4g36420829794ribosomal protein L12 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMFO.I.C.G.H.G.



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