Microarray experiments to specifically-expressed genes

GSM ID GSM173445
Assay name oxt6 mutant, biological rep1
GSE experiment GSE7211: A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
443.7100.0219.5At5g50335835100unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
361.9100.0137.4At1g28070839700-F:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
234.8100.0105.5At1g29440839820-F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
187.7100.0148.4At3g03870821099unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
178.0100.0301.3At4g34760829628auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POO.I.C.G.H.G.
175.0100.0171.6At5g59080836025unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:chloroplast;PO.I.C.G.H.G.
174.3100.0467.1At3g16570820907RALFL23 (ralf-like 23)Encodes RALF23, a member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. RALF23 is significantly downregulated by brassinolide treatment of seedlings. Overexpression of AtRALF23 impairs brassinolide-induced hypocotyls elongation, and mature overexpressing plants are shorter and bushier. RALF23 overexpression produces slower growing seedlings with roots that have reduced capacity to acidify the rhizosphere.O.I.C.G.H.G.
151.499.946.2At1g75250843862ATRL6 (ARABIDOPSIS RAD-LIKE 6)F:transcription factor activity;P:regulation of transcription;C:unknown;PMOO.I.C.G.H.G.
145.599.9174.8At4g38860830041auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
128.499.9123.6At5g18060831310auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
110.299.9117.7At5g64880836611unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
91.499.939.5At1g43590840943transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
89.699.966.8At5g15160831368bHLH family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:vacuole;PO.I.C.G.H.G.
89.599.9112.1At1g53870841824unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
85.099.922.7At2g40530818648unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
83.399.928.4At1g19510838537ATRL5 (ARABIDOPSIS RAD-LIKE 5)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;PMOO.I.C.G.H.G.
77.299.9212.5At1g62040842499ATG8C (autophagy 8c)F:microtubule binding;P:autophagy;C:unknown;MOPFVO.I.C.G.H.G.
75.799.974.0At5g39860833982PRE1 (PACLOBUTRAZOL RESISTANCE1)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
75.399.9225.1At3g14430820666unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:mitochondrion;PO.I.C.G.H.G.
67.799.970.7At1g48330841253unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
67.499.8168.8At5g64770836598unknown proteinF:molecular_function unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
67.199.839.1At5g51390835213unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
65.799.887.3At5g14410831292unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
64.099.820.1At2g21200816657auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
61.199.826.6At3g29370822596unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
59.999.818.5At3g03840821121auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
59.599.8164.3At1g30260839906-F:molecular_function unknown;P:response to cytokinin stimulus;C:unknown;PO.I.C.G.H.G.
58.799.891.8At1g29510839828SAUR68 (SMALL AUXIN UPREGULATED 68)F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
56.799.8259.7At1g11530837696ATCXXS1 (C-terminal cysteine residue is changed to a serine 1)Encodes a monocysteinic thioredoxin, thioredoxin in which the second cysteine of the redox site is replaced by a serine, with low disulfide reductase but efficient disulfide isomerase activity.O.I.C.G.H.G.
56.599.835.5At4g38850830040SAUR15 (SMALL AUXIN UPREGULATED 15)mRNA is rapidly induced by auxin and is very short-lived. Has been used as a reporter gene in studying auxin mutants.O.I.C.G.H.G.
54.299.882.5At5g57340835839unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBAO.I.C.G.H.G.
52.999.860.6At4g23870828486unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
52.799.866.3At1g53030841736cytochrome c oxidase copper chaperone family proteinencodes a copper chaperone, can functional complements the yeast COX17 null mutant. May play a role in the delivery of copper to mitochondria. Expressed in roots and thus may also play a role in copper transport in the roots.O.I.C.G.H.G.
52.299.8199.4At2g32090817769lactoylglutathione lyase family protein / glyoxalase I family proteinF:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BPOFMAO.I.C.G.H.G.
50.499.8107.9At2g24040816938hydrophobic protein, putative / low temperature and salt responsive protein, putativeF:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;PFBMOO.I.C.G.H.G.
50.099.861.2At3g57320824899unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
49.599.8110.6At4g12970826909unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
49.499.8133.1At1g12845837841unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
48.999.880.3At2g19350816452unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO.I.C.G.H.G.
46.799.8198.5At1g22890838896unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
46.299.8161.5At5g62575836378unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
45.799.822.9At3g28310822458-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
45.299.871.8At5g15190831371unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
43.799.847.2At4g24370828539unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
41.399.823.8At3g15440820783-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
37.099.7117.1At1g53885841826senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
36.099.787.0At1g28230839717PUP1 (PURINE PERMEASE 1)Encodes a transporter that transports purines,cytokinins and other adenine derivatives. Expressed in the leaf hydathodes where it may be involved in re-uptake of cytokinins during guttation.O.I.C.G.H.G.
35.699.7338.5At1g77710844107-F:unknown;P:biological_process unknown;C:cellular_component unknown;MOPO.I.C.G.H.G.
35.499.7226.5At1g26670839208VTI1Bmember of VTI1 Gene Family. Normally localizes to the transgolgi network and plasma membrane. A dominant mutation (zip1) alters the subcellular localization of VTI12 and suppresses loss of function mutation (zag1) of VTI11. Interacts with members of the SYP family. Involved in protein trafficking to protein storage vacuoles.O.I.C.G.H.G.
34.499.7290.9At5g22270832287unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
34.299.761.5At2g21195816656unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;PO.I.C.G.H.G.
33.799.755.3At1g28250839719unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
33.599.7198.3At4g38840830039auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus, response to cold;C:plasma membrane;POO.I.C.G.H.G.
33.299.747.8At1g01725839271unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
33.099.7275.3At1g78020844137senescence-associated protein-relatedF:unknown;P:unknown;C:unknown;PO.I.C.G.H.G.
32.399.744.1At5g44170834440-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBO.I.C.G.H.G.
32.399.738.5At3g45730823715unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
32.199.7200.5At5g36910833659THI2.2 (THIONIN 2.2)Encodes a thionin that is expressed at a low basal level in seedlings and shows circadian variation. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.O.I.C.G.H.G.
32.099.765.7At5g41050834107unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
31.899.767.4At3g23805821963RALFL24 (ralf-like 24)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.O.I.C.G.H.G.
31.699.780.2At5g40500834048unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
30.499.78.5At1g29490839826auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
30.399.7169.7At2g45170819125AtATG8eInvolved in autophagy. Under nutrient starvation the protein localizes to autophagosomes.O.I.C.G.H.G.
29.899.748.1At4g25490828653CBF1 (C-REPEAT/DRE BINDING FACTOR 1)Transcriptional activator that binds to the DRE/CRT regulatory element and induces COR (cold-regulated) gene expression increasing plant freezing tolerance. It encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid.O.I.C.G.H.G.
29.799.770.5At3g13910820604unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
29.299.7287.6At4g15800827260RALFL33 (ralf-like 33)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.O.I.C.G.H.G.
28.999.754.8At1g77540844090H3/H4 histone acetyltransferaseEncodes a H3/H4 histone acetyltransferase. Belongs to the GNAT family, whose many members are involved in histone acetylation and chromatin remodeling, and are important for the regulation of cell growth and development.O.I.C.G.H.G.
28.999.721.1At5g67390836875unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
28.399.7132.3At1g15010838066unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBO.I.C.G.H.G.
28.299.7135.7At2g17450816251RHA3AEncodes a putative RING-H2 finger protein RHA3a.O.I.C.G.H.G.
27.899.7138.1At5g25760832645PEX4 (PEROXIN4)mutant displays sucrose-dependent seedling development and reduced lateral root production. PEX4 interacts with PEX22 in a yeast two-hybrid. Necessary for peroxisome biogenesis. The PEX4 and PEX22 pair may be important during the remodeling of peroxisome matrix contents as glyoxysomes transition to leaf peroxisomes.O.I.C.G.H.G.
27.299.742.0At2g19460816465unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
27.099.7303.2At4g14270827068-Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins.O.I.C.G.H.G.
26.899.7151.7At5g57785835887unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
26.599.7229.6At4g05070825849unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
25.799.7110.8At5g37770833755TCH2 (TOUCH 2)Encodes a protein with 40% similarity to calmodulin. Binds Ca(2+) and, as a consequence, undergoes conformational changes. CML24 expression occurs in all major organs, and transcript levels are increased from 2- to 15-fold in plants subjected to touch, darkness, heat, cold, hydrogen peroxide, abscisic acid (ABA), and indole-3-acetic acid. However, CML24 protein accumulation changes were not detectable. The putative CML24 regulatory region confers reporter expression at sites of predicted mechanical stress; in regions undergoing growth; in vascular tissues and various floral organs; and in stomata, trichomes, and hydathodes. CML24-underexpressing transgenics are resistant to ABA inhibition of germination and seedling growth, are defective in long-day induction of flowering, and have enhanced tolerance to CoCl(2), molybdic acid, ZnSO(4), and MgCl(2).O.I.C.G.H.G.
25.799.718.9At1g29460839822auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;PO.I.C.G.H.G.
25.299.671.9At4g33960829542unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
24.099.6281.6At5g44580834486unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
23.599.6217.3At5g43260834344chaperone protein dnaJ-relatedF:unknown;P:unknown;C:unknown;PBOMO.I.C.G.H.G.
23.599.6103.5At4g25470828651CBF2 (C-REPEAT/DRE BINDING FACTOR 2)Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature, abscisic acid, and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes, which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3, suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway.O.I.C.G.H.G.
23.299.648.2At4g05590825927unknown proteinF:unknown;P:biological_process unknown;C:mitochondrion;MFPOO.I.C.G.H.G.
22.899.646.8At5g24170832484-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPO.I.C.G.H.G.
22.799.6223.4At2g24790817016COL3 (CONSTANS-LIKE 3)Positive regulator of photomorphogenesis that acts downstream of COP1 but can promote lateral root development independently of COP1 and also function as a daylength-sensitive regulator of shoot branching.O.I.C.G.H.G.
22.699.630.6At4g23880828487unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFO.I.C.G.H.G.
22.599.616.4At5g49170834976unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
22.499.633.4At4g20030827748RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:nucleus;MPFOBAO.I.C.G.H.G.
22.299.6203.4At2g05310815079unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
21.899.682.3At4g09550826539unknown proteinF:unknown;P:unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
21.699.6269.1At4g36500829802unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
21.699.648.3At4g01897828216unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPO.I.C.G.H.G.
21.199.620.2At1g49245841348-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
20.899.636.8At4g13790827013auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus, response to red light, response to far red light;C:unknown;POO.I.C.G.H.G.
20.499.625.1At3g03180821059Got1-like family proteinF:molecular_function unknown;P:vesicle-mediated transport;C:cellular_component unknown;MFOPO.I.C.G.H.G.
20.299.6109.4At2g27830817330-F:molecular_function unknown;P:unknown;C:unknown;PO.I.C.G.H.G.
20.299.641.3At1g29500839827auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:nucleolus, nucleus;PO.I.C.G.H.G.
20.199.630.0At2g42870818887PAR1 (PHY RAPIDLY REGULATED 1)Encodes PHYTOCHROME RAPIDLY REGULATED1 (PAR1), an atypical basic helix-loop-helix (bHLP) protein. Closely related to PAR2 (At3g58850). Up regulated after simulated shade perception. Acts in the nucleus to control plant development and as a negative regulator of shade avoidance response. Functions as transcriptional repressor of auxin-responsive genes SAUR15 (AT4G38850) and SAUR68 (AT1G29510).O.I.C.G.H.G.
20.099.684.5At2g01090814638ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putativeF:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrial respiratory chain complex III;POMFO.I.C.G.H.G.
19.899.657.8At4g09890826579unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
19.799.6136.5At1g56300842083DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding;P:protein folding, response to cyclopentenone;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage