CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM173444

Assay name wild-type Arabidopsis, biological rep3

GSE experiment GSE7211: A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
507.4 100.0 76.4 At3g28310 822458 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
345.7 100.0 193.8 At5g50335 835100 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
269.6 100.0 349.7 At1g30260 839906 - F:molecular_function unknown;P:response to cytokinin stimulus;C:unknown;P O.I. C.G. H.G.
145.6 99.9 426.9 At3g16570 820907 RALFL23 (ralf-like 23) Encodes RALF23, a member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. RALF23 is significantly downregulated by brassinolide treatment of seedlings. Overexpression of AtRALF23 impairs brassinolide-induced hypocotyls elongation, and mature overexpressing plants are shorter and bushier. RALF23 overexpression produces slower growing seedlings with roots that have reduced capacity to acidify the rhizosphere. O.I. C.G. H.G.
92.1 99.9 39.6 At1g43590 840943 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
83.7 99.9 237.2 At3g14430 820666 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:mitochondrion;P O.I. C.G. H.G.
82.2 99.9 101.7 At5g64880 836611 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
75.2 99.9 88.5 At1g77540 844090 H3/H4 histone acetyltransferase Encodes a H3/H4 histone acetyltransferase. Belongs to the GNAT family, whose many members are involved in histone acetylation and chromatin remodeling, and are important for the regulation of cell growth and development. O.I. C.G. H.G.
73.2 99.9 61.1 At4g24370 828539 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
65.8 99.8 58.5 At1g28070 839700 - F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
58.5 99.8 18.8 At2g40530 818648 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
56.8 99.8 107.6 At5g40500 834048 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
51.7 99.8 103.0 At4g33960 829542 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
47.0 99.8 189.3 At2g32090 817769 lactoylglutathione lyase family protein / glyoxalase I family protein F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BPOFMA O.I. C.G. H.G.
45.2 99.8 102.1 At2g24040 816938 hydrophobic protein, putative / low temperature and salt responsive protein, putative F:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;PFBMO O.I. C.G. H.G.
45.1 99.8 129.3 At1g53885 841826 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
42.9 99.8 590.9 At5g66040 836734 STR16 (SULFURTRANSFERASE PROTEIN 16) F:molecular_function unknown;P:aging;C:cellular_component unknown;BOPMAF O.I. C.G. H.G.
41.8 99.8 55.5 At1g48330 841253 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
41.1 99.8 121.4 At1g12845 837841 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
41.0 99.8 219.4 At5g03455 831832 CDC25 Encodes a homolog of yeast cell cycle regulator CDC25. It has a sole catalytic domain and devoid of the N-terminal regulatory region found in the human CDC25 and is capable of reducing the mitotic cell length of transformed fission yeast. Non-plant CDC25 proteins have been shown to do this. However, the gene is more or less constant, regardless of whether the tissue examined contained proliferative cells. Also described as having arsenate reductase activity involved in arsenate resistance. O.I. C.G. H.G.
40.4 99.8 40.3 At5g55790 835673 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
40.1 99.8 142.9 At4g34760 829628 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
39.5 99.8 57.4 At1g53030 841736 cytochrome c oxidase copper chaperone family protein encodes a copper chaperone, can functional complements the yeast COX17 null mutant. May play a role in the delivery of copper to mitochondria. Expressed in roots and thus may also play a role in copper transport in the roots. O.I. C.G. H.G.
39.2 99.8 43.3 At5g23460 832412 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
38.3 99.8 213.3 At1g11530 837696 ATCXXS1 (C-terminal cysteine residue is changed to a serine 1) Encodes a monocysteinic thioredoxin, thioredoxin in which the second cysteine of the redox site is replaced by a serine, with low disulfide reductase but efficient disulfide isomerase activity. O.I. C.G. H.G.
38.0 99.8 110.7 At2g05630 815112 autophagy 8d (APG8d) in the Arabidopsis autophagy pathway O.I. C.G. H.G.
37.9 99.8 127.3 At5g60460 836167 sec61beta family protein F:protein transporter activity;P:protein transport;C:plasma membrane;MFPOB O.I. C.G. H.G.
37.4 99.7 30.0 At2g01080 814636 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PF O.I. C.G. H.G.
36.1 99.7 149.2 At1g15010 838066 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PB O.I. C.G. H.G.
36.1 99.7 81.5 At3g44735 823603 PSK1 Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor. O.I. C.G. H.G.
33.5 99.7 93.9 At5g05950 830480 MEE60 (maternal effect embryo arrest 60) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;P O.I. C.G. H.G.
32.9 99.7 52.4 At3g48020 823957 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
30.7 99.7 57.6 At4g01897 828216 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBP O.I. C.G. H.G.
30.4 99.7 144.4 At5g25760 832645 PEX4 (PEROXIN4) mutant displays sucrose-dependent seedling development and reduced lateral root production. PEX4 interacts with PEX22 in a yeast two-hybrid. Necessary for peroxisome biogenesis. The PEX4 and PEX22 pair may be important during the remodeling of peroxisome matrix contents as glyoxysomes transition to leaf peroxisomes. O.I. C.G. H.G.
30.4 99.7 80.4 At2g21180 816653 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
30.2 99.7 57.8 At2g21195 816656 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P O.I. C.G. H.G.
29.7 99.7 1317.6 At5g15960 831453 KIN1 cold and ABA inducible protein kin1, possibly functions as an anti-freeze protein. Transcript level of this gene is induced by cold, ABA, dehydration and osmoticum (mannitol). However, protein activity of GUS fused to the promoter of this gene is inhibited by cold treatment, suggesting an inhibition of the protein by increased transcript level. O.I. C.G. H.G.
29.3 99.7 29.5 At2g45450 819153 ZPR1 (LITTLE ZIPPER 1) ZPR1, a small leucine zipper-containing protein that interacts with REV HD-ZIPIII and is involved in the establishment of leaf polarity. O.I. C.G. H.G.
29.0 99.7 140.6 At5g07960 830690 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;MPO O.I. C.G. H.G.
28.7 99.7 282.9 At1g19960 838585 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB O.I. C.G. H.G.
28.5 99.7 29.7 At3g03180 821059 Got1-like family protein F:molecular_function unknown;P:vesicle-mediated transport;C:cellular_component unknown;MFOP O.I. C.G. H.G.
27.0 99.7 150.8 At1g22890 838896 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
26.4 99.7 273.5 At4g15800 827260 RALFL33 (ralf-like 33) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. C.G. H.G.
26.3 99.7 61.4 At3g23805 821963 RALFL24 (ralf-like 24) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. C.G. H.G.
25.9 99.7 195.9 At3g47836 823939 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
25.7 99.7 285.4 At4g13520 826984 SMAP1 (SMALL ACIDIC PROTEIN 1) Encodes a small acid protein (SMAP1) that mediates responses Arabidopsis root to the synthetic auxin 2,4-Dichlorophenoxyacetic acid. O.I. C.G. H.G.
25.7 99.7 129.6 At2g17450 816251 RHA3A Encodes a putative RING-H2 finger protein RHA3a. O.I. C.G. H.G.
25.6 99.7 122.3 At1g62040 842499 ATG8C (autophagy 8c) F:microtubule binding;P:autophagy;C:unknown;MOPFV O.I. C.G. H.G.
25.4 99.6 286.0 At1g77710 844107 - F:unknown;P:biological_process unknown;C:cellular_component unknown;MOP O.I. C.G. H.G.
25.4 99.6 182.6 At1g29970 839876 RPL18AA (60S RIBOSOMAL PROTEIN L18A-1) F:unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
25.1 99.6 396.8 At4g30650 829188 hydrophobic protein, putative / low temperature and salt responsive protein, putative F:unknown;P:response to salt stress, hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;BFPMO O.I. C.G. H.G.
25.0 99.6 223.3 At4g05070 825849 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
24.5 99.6 276.1 At4g29735 829095 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO O.I. C.G. H.G.
24.5 99.6 23.6 At1g04070 839317 TOM22-I (TRANSLOCASE OF OUTER MEMBRANE 22-I) Subunit of the TOM complex, a translocase in the outer mitochondrial membrane that selectively allows proteins with a mitochondrial targeting sequence to enter the mitochondrion. O.I. C.G. H.G.
24.5 99.6 22.0 At5g35480 833512 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
24.4 99.6 294.7 At1g15120 838075 ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative F:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrion, mitochondrial respiratory chain complex III;MPOF O.I. C.G. H.G.
24.3 99.6 53.4 At3g03870 821099 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
23.9 99.6 140.7 At2g15050 815994 LTP Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
23.9 99.6 90.2 At5g65870 836716 ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR) Probable phytosulfokines 5 precursor, coding for a unique plant peptide growth factor. O.I. C.G. H.G.
23.8 99.6 33.6 At4g08330 826387 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
23.4 99.6 176.1 At5g67490 836885 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPF O.I. C.G. H.G.
23.2 99.6 19.2 At2g18350 816350 AtHB24 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 24) F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
23.1 99.6 52.5 At5g18060 831310 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
23.0 99.6 251.0 At2g42310 818832 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, respiratory chain complex I;PFM O.I. C.G. H.G.
22.8 99.6 228.8 At1g78020 844137 senescence-associated protein-related F:unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
22.7 99.6 61.7 At5g59080 836025 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:chloroplast;P O.I. C.G. H.G.
22.1 99.6 60.7 At3g13910 820604 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
21.8 99.6 111.1 At5g62575 836378 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
21.1 99.6 788.9 At2g33830 817950 dormancy/auxin associated family protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
20.7 99.6 24.8 At1g72240 843556 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
20.3 99.6 261.0 At4g36500 829802 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
20.2 99.6 51.6 At2g19350 816452 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP O.I. C.G. H.G.
20.0 99.6 42.2 At3g19660 821503 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
19.9 99.6 84.7 At2g27960 817340 CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) catalytic subunit of cyclin dependent kinase 1. physically interact with cyclin-dependent kinases (CDKs) and play an essential, but yet not entirely resolved, role in the regulation of the cell cycle O.I. C.G. H.G.
19.8 99.6 525.1 At2g42540 818854 COR15A (COLD-REGULATED 15A) A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope. O.I. C.G. H.G.
19.8 99.6 137.1 At2g45170 819125 AtATG8e Involved in autophagy. Under nutrient starvation the protein localizes to autophagosomes. O.I. C.G. H.G.
19.6 99.6 677.6 At1g64230 842728 ubiquitin-conjugating enzyme, putative F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:plasma membrane;MFOPV O.I. C.G. H.G.
19.3 99.6 837.0 At5g27700 832832 structural constituent of ribosome F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, ribosome;MFOP O.I. C.G. H.G.
19.1 99.6 14.8 At3g29370 822596 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
19.0 99.5 32.2 At4g28703 828989 - F:molecular_function unknown;P:unknown;C:cellular_component unknown;BOP O.I. C.G. H.G.
19.0 99.5 16.6 At2g31230 817680 ATERF15 (Ethylene-responsive element binding factor 15) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. O.I. C.G. H.G.
18.5 99.5 21.4 At3g52100 824373 PHD finger family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFB O.I. C.G. H.G.
17.9 99.5 899.7 At3g09390 820098 MT2A (METALLOTHIONEIN 2A) metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage O.I. C.G. H.G.
17.7 99.5 68.9 At1g36380 840544 unknown protein F:unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
17.5 99.5 26.0 At3g44020 823519 thylakoid lumenal P17.1 protein F:unknown;P:unknown;C:chloroplast thylakoid lumen;PO O.I. C.G. H.G.
17.3 99.5 39.1 At5g62900 836410 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
17.1 99.5 189.7 At5g03345 831867 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO O.I. C.G. H.G.
17.1 99.5 59.9 At4g38860 830041 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
16.9 99.5 431.3 At1g49500 841374 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
16.9 99.5 346.3 At1g14400 838002 UBC1 (UBIQUITIN CARRIER PROTEIN 1) ubiquitin carrier protein O.I. C.G. H.G.
16.7 99.5 50.5 At1g53035 841737 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
16.6 99.5 60.1 At3g06780 819863 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA O.I. C.G. H.G.
16.5 99.5 215.1 At5g24165 832483 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
16.5 99.5 63.8 At4g12970 826909 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
16.5 99.5 33.9 At4g23870 828486 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
16.4 99.5 982.2 At3g22240 821794 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
16.4 99.5 137.4 At3g18250 821353 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMFO O.I. C.G. H.G.
16.3 99.5 231.8 At5g44580 834486 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
16.1 99.5 15.1 At1g75250 843862 ATRL6 (ARABIDOPSIS RAD-LIKE 6) F:transcription factor activity;P:regulation of transcription;C:unknown;PMO O.I. C.G. H.G.
15.9 99.5 376.7 At1g67865 843114 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
507.4	100.0	76.4	At3g28310	822458	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
345.7	100.0	193.8	At5g50335	835100	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
269.6	100.0	349.7	At1g30260	839906	-	F:molecular_function unknown;P:response to cytokinin stimulus;C:unknown;P	O.I.	C.G.	H.G.
145.6	99.9	426.9	At3g16570	820907	RALFL23 (ralf-like 23)	Encodes RALF23, a member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. RALF23 is significantly downregulated by brassinolide treatment of seedlings. Overexpression of AtRALF23 impairs brassinolide-induced hypocotyls elongation, and mature overexpressing plants are shorter and bushier. RALF23 overexpression produces slower growing seedlings with roots that have reduced capacity to acidify the rhizosphere.	O.I.	C.G.	H.G.
92.1	99.9	39.6	At1g43590	840943	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
83.7	99.9	237.2	At3g14430	820666	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:mitochondrion;P	O.I.	C.G.	H.G.
82.2	99.9	101.7	At5g64880	836611	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
75.2	99.9	88.5	At1g77540	844090	H3/H4 histone acetyltransferase	Encodes a H3/H4 histone acetyltransferase. Belongs to the GNAT family, whose many members are involved in histone acetylation and chromatin remodeling, and are important for the regulation of cell growth and development.	O.I.	C.G.	H.G.
73.2	99.9	61.1	At4g24370	828539	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
65.8	99.8	58.5	At1g28070	839700	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
58.5	99.8	18.8	At2g40530	818648	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
56.8	99.8	107.6	At5g40500	834048	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
51.7	99.8	103.0	At4g33960	829542	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
47.0	99.8	189.3	At2g32090	817769	lactoylglutathione lyase family protein / glyoxalase I family protein	F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BPOFMA	O.I.	C.G.	H.G.
45.2	99.8	102.1	At2g24040	816938	hydrophobic protein, putative / low temperature and salt responsive protein, putative	F:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;PFBMO	O.I.	C.G.	H.G.
45.1	99.8	129.3	At1g53885	841826	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
42.9	99.8	590.9	At5g66040	836734	STR16 (SULFURTRANSFERASE PROTEIN 16)	F:molecular_function unknown;P:aging;C:cellular_component unknown;BOPMAF	O.I.	C.G.	H.G.
41.8	99.8	55.5	At1g48330	841253	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
41.1	99.8	121.4	At1g12845	837841	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
41.0	99.8	219.4	At5g03455	831832	CDC25	Encodes a homolog of yeast cell cycle regulator CDC25. It has a sole catalytic domain and devoid of the N-terminal regulatory region found in the human CDC25 and is capable of reducing the mitotic cell length of transformed fission yeast. Non-plant CDC25 proteins have been shown to do this. However, the gene is more or less constant, regardless of whether the tissue examined contained proliferative cells. Also described as having arsenate reductase activity involved in arsenate resistance.	O.I.	C.G.	H.G.
40.4	99.8	40.3	At5g55790	835673	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
40.1	99.8	142.9	At4g34760	829628	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
39.5	99.8	57.4	At1g53030	841736	cytochrome c oxidase copper chaperone family protein	encodes a copper chaperone, can functional complements the yeast COX17 null mutant. May play a role in the delivery of copper to mitochondria. Expressed in roots and thus may also play a role in copper transport in the roots.	O.I.	C.G.	H.G.
39.2	99.8	43.3	At5g23460	832412	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
38.3	99.8	213.3	At1g11530	837696	ATCXXS1 (C-terminal cysteine residue is changed to a serine 1)	Encodes a monocysteinic thioredoxin, thioredoxin in which the second cysteine of the redox site is replaced by a serine, with low disulfide reductase but efficient disulfide isomerase activity.	O.I.	C.G.	H.G.
38.0	99.8	110.7	At2g05630	815112	autophagy 8d (APG8d)	in the Arabidopsis autophagy pathway	O.I.	C.G.	H.G.
37.9	99.8	127.3	At5g60460	836167	sec61beta family protein	F:protein transporter activity;P:protein transport;C:plasma membrane;MFPOB	O.I.	C.G.	H.G.
37.4	99.7	30.0	At2g01080	814636	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PF	O.I.	C.G.	H.G.
36.1	99.7	149.2	At1g15010	838066	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PB	O.I.	C.G.	H.G.
36.1	99.7	81.5	At3g44735	823603	PSK1	Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor.	O.I.	C.G.	H.G.
33.5	99.7	93.9	At5g05950	830480	MEE60 (maternal effect embryo arrest 60)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;P	O.I.	C.G.	H.G.
32.9	99.7	52.4	At3g48020	823957	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
30.7	99.7	57.6	At4g01897	828216	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBP	O.I.	C.G.	H.G.
30.4	99.7	144.4	At5g25760	832645	PEX4 (PEROXIN4)	mutant displays sucrose-dependent seedling development and reduced lateral root production. PEX4 interacts with PEX22 in a yeast two-hybrid. Necessary for peroxisome biogenesis. The PEX4 and PEX22 pair may be important during the remodeling of peroxisome matrix contents as glyoxysomes transition to leaf peroxisomes.	O.I.	C.G.	H.G.
30.4	99.7	80.4	At2g21180	816653	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
30.2	99.7	57.8	At2g21195	816656	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
29.7	99.7	1317.6	At5g15960	831453	KIN1	cold and ABA inducible protein kin1, possibly functions as an anti-freeze protein. Transcript level of this gene is induced by cold, ABA, dehydration and osmoticum (mannitol). However, protein activity of GUS fused to the promoter of this gene is inhibited by cold treatment, suggesting an inhibition of the protein by increased transcript level.	O.I.	C.G.	H.G.
29.3	99.7	29.5	At2g45450	819153	ZPR1 (LITTLE ZIPPER 1)	ZPR1, a small leucine zipper-containing protein that interacts with REV HD-ZIPIII and is involved in the establishment of leaf polarity.	O.I.	C.G.	H.G.
29.0	99.7	140.6	At5g07960	830690	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;MPO	O.I.	C.G.	H.G.
28.7	99.7	282.9	At1g19960	838585	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB	O.I.	C.G.	H.G.
28.5	99.7	29.7	At3g03180	821059	Got1-like family protein	F:molecular_function unknown;P:vesicle-mediated transport;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
27.0	99.7	150.8	At1g22890	838896	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
26.4	99.7	273.5	At4g15800	827260	RALFL33 (ralf-like 33)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	C.G.	H.G.
26.3	99.7	61.4	At3g23805	821963	RALFL24 (ralf-like 24)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	C.G.	H.G.
25.9	99.7	195.9	At3g47836	823939	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
25.7	99.7	285.4	At4g13520	826984	SMAP1 (SMALL ACIDIC PROTEIN 1)	Encodes a small acid protein (SMAP1) that mediates responses Arabidopsis root to the synthetic auxin 2,4-Dichlorophenoxyacetic acid.	O.I.	C.G.	H.G.
25.7	99.7	129.6	At2g17450	816251	RHA3A	Encodes a putative RING-H2 finger protein RHA3a.	O.I.	C.G.	H.G.
25.6	99.7	122.3	At1g62040	842499	ATG8C (autophagy 8c)	F:microtubule binding;P:autophagy;C:unknown;MOPFV	O.I.	C.G.	H.G.
25.4	99.6	286.0	At1g77710	844107	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;MOP	O.I.	C.G.	H.G.
25.4	99.6	182.6	At1g29970	839876	RPL18AA (60S RIBOSOMAL PROTEIN L18A-1)	F:unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
25.1	99.6	396.8	At4g30650	829188	hydrophobic protein, putative / low temperature and salt responsive protein, putative	F:unknown;P:response to salt stress, hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;BFPMO	O.I.	C.G.	H.G.
25.0	99.6	223.3	At4g05070	825849	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
24.5	99.6	276.1	At4g29735	829095	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO	O.I.	C.G.	H.G.
24.5	99.6	23.6	At1g04070	839317	TOM22-I (TRANSLOCASE OF OUTER MEMBRANE 22-I)	Subunit of the TOM complex, a translocase in the outer mitochondrial membrane that selectively allows proteins with a mitochondrial targeting sequence to enter the mitochondrion.	O.I.	C.G.	H.G.
24.5	99.6	22.0	At5g35480	833512	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
24.4	99.6	294.7	At1g15120	838075	ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative	F:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrion, mitochondrial respiratory chain complex III;MPOF	O.I.	C.G.	H.G.
24.3	99.6	53.4	At3g03870	821099	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
23.9	99.6	140.7	At2g15050	815994	LTP	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
23.9	99.6	90.2	At5g65870	836716	ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR)	Probable phytosulfokines 5 precursor, coding for a unique plant peptide growth factor.	O.I.	C.G.	H.G.
23.8	99.6	33.6	At4g08330	826387	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
23.4	99.6	176.1	At5g67490	836885	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPF	O.I.	C.G.	H.G.
23.2	99.6	19.2	At2g18350	816350	AtHB24 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 24)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
23.1	99.6	52.5	At5g18060	831310	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
23.0	99.6	251.0	At2g42310	818832	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, respiratory chain complex I;PFM	O.I.	C.G.	H.G.
22.8	99.6	228.8	At1g78020	844137	senescence-associated protein-related	F:unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
22.7	99.6	61.7	At5g59080	836025	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:chloroplast;P	O.I.	C.G.	H.G.
22.1	99.6	60.7	At3g13910	820604	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
21.8	99.6	111.1	At5g62575	836378	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
21.1	99.6	788.9	At2g33830	817950	dormancy/auxin associated family protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
20.7	99.6	24.8	At1g72240	843556	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
20.3	99.6	261.0	At4g36500	829802	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
20.2	99.6	51.6	At2g19350	816452	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP	O.I.	C.G.	H.G.
20.0	99.6	42.2	At3g19660	821503	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.9	99.6	84.7	At2g27960	817340	CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)	catalytic subunit of cyclin dependent kinase 1. physically interact with cyclin-dependent kinases (CDKs) and play an essential, but yet not entirely resolved, role in the regulation of the cell cycle	O.I.	C.G.	H.G.
19.8	99.6	525.1	At2g42540	818854	COR15A (COLD-REGULATED 15A)	A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope.	O.I.	C.G.	H.G.
19.8	99.6	137.1	At2g45170	819125	AtATG8e	Involved in autophagy. Under nutrient starvation the protein localizes to autophagosomes.	O.I.	C.G.	H.G.
19.6	99.6	677.6	At1g64230	842728	ubiquitin-conjugating enzyme, putative	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:plasma membrane;MFOPV	O.I.	C.G.	H.G.
19.3	99.6	837.0	At5g27700	832832	structural constituent of ribosome	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, ribosome;MFOP	O.I.	C.G.	H.G.
19.1	99.6	14.8	At3g29370	822596	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.0	99.5	32.2	At4g28703	828989	-	F:molecular_function unknown;P:unknown;C:cellular_component unknown;BOP	O.I.	C.G.	H.G.
19.0	99.5	16.6	At2g31230	817680	ATERF15 (Ethylene-responsive element binding factor 15)	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	O.I.	C.G.	H.G.
18.5	99.5	21.4	At3g52100	824373	PHD finger family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFB	O.I.	C.G.	H.G.
17.9	99.5	899.7	At3g09390	820098	MT2A (METALLOTHIONEIN 2A)	metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage	O.I.	C.G.	H.G.
17.7	99.5	68.9	At1g36380	840544	unknown protein	F:unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
17.5	99.5	26.0	At3g44020	823519	thylakoid lumenal P17.1 protein	F:unknown;P:unknown;C:chloroplast thylakoid lumen;PO	O.I.	C.G.	H.G.
17.3	99.5	39.1	At5g62900	836410	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
17.1	99.5	189.7	At5g03345	831867	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO	O.I.	C.G.	H.G.
17.1	99.5	59.9	At4g38860	830041	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
16.9	99.5	431.3	At1g49500	841374	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
16.9	99.5	346.3	At1g14400	838002	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	ubiquitin carrier protein	O.I.	C.G.	H.G.
16.7	99.5	50.5	At1g53035	841737	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
16.6	99.5	60.1	At3g06780	819863	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA	O.I.	C.G.	H.G.
16.5	99.5	215.1	At5g24165	832483	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
16.5	99.5	63.8	At4g12970	826909	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
16.5	99.5	33.9	At4g23870	828486	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.4	99.5	982.2	At3g22240	821794	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
16.4	99.5	137.4	At3g18250	821353	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMFO	O.I.	C.G.	H.G.
16.3	99.5	231.8	At5g44580	834486	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
16.1	99.5	15.1	At1g75250	843862	ATRL6 (ARABIDOPSIS RAD-LIKE 6)	F:transcription factor activity;P:regulation of transcription;C:unknown;PMO	O.I.	C.G.	H.G.
15.9	99.5	376.7	At1g67865	843114	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.

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GSM ID	GSM173444
Assay name	wild-type Arabidopsis, biological rep3
GSE experiment	GSE7211: A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana

Microarray experiments to specifically-expressed genes

GSM ID GSM173444 Assay name wild-type Arabidopsis, biological rep3 GSE experiment GSE7211: A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana

GSM ID GSM173444

Assay name wild-type Arabidopsis, biological rep3

GSE experiment GSE7211: A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana