CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM173443

Assay name wild-type Arabidopsis, biological rep2

GSE experiment GSE7211: A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
351.0 100.0 195.3 At5g50335 835100 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
220.2 100.0 525.0 At3g16570 820907 RALFL23 (ralf-like 23) Encodes RALF23, a member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. RALF23 is significantly downregulated by brassinolide treatment of seedlings. Overexpression of AtRALF23 impairs brassinolide-induced hypocotyls elongation, and mature overexpressing plants are shorter and bushier. RALF23 overexpression produces slower growing seedlings with roots that have reduced capacity to acidify the rhizosphere. O.I. C.G. H.G.
203.4 100.0 48.4 At3g28310 822458 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
117.1 99.9 44.7 At1g43590 840943 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
112.4 99.9 225.8 At1g30260 839906 - F:molecular_function unknown;P:response to cytokinin stimulus;C:unknown;P O.I. C.G. H.G.
109.4 99.9 75.5 At1g28070 839700 - F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
96.0 99.9 254.1 At3g14430 820666 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:mitochondrion;P O.I. C.G. H.G.
87.8 99.9 135.8 At4g38860 830041 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
82.4 99.9 22.3 At2g40530 818648 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
79.6 99.9 39.7 At5g35480 833512 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
66.0 99.8 183.5 At4g34760 829628 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
56.6 99.8 142.5 At1g12845 837841 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
56.3 99.8 81.3 At3g03870 821099 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
54.1 99.8 141.5 At1g53885 841826 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
52.9 99.8 51.9 At4g24370 828539 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
52.0 99.8 109.6 At2g24040 816938 hydrophobic protein, putative / low temperature and salt responsive protein, putative F:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;PFBMO O.I. C.G. H.G.
51.7 99.8 178.7 At1g15010 838066 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PB O.I. C.G. H.G.
51.3 99.8 80.3 At5g64880 836611 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
49.0 99.8 203.3 At1g22890 838896 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
47.9 99.8 98.8 At5g40500 834048 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
47.6 99.8 98.9 At4g33960 829542 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
47.5 99.8 89.1 At3g13910 820604 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
46.5 99.8 43.3 At5g55790 835673 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
46.0 99.8 69.2 At1g77540 844090 H3/H4 histone acetyltransferase Encodes a H3/H4 histone acetyltransferase. Belongs to the GNAT family, whose many members are involved in histone acetylation and chromatin remodeling, and are important for the regulation of cell growth and development. O.I. C.G. H.G.
45.2 99.8 162.7 At1g62040 842499 ATG8C (autophagy 8c) F:microtubule binding;P:autophagy;C:unknown;MOPFV O.I. C.G. H.G.
42.0 99.8 67.3 At4g01897 828216 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBP O.I. C.G. H.G.
41.3 99.8 58.7 At1g53030 841736 cytochrome c oxidase copper chaperone family protein encodes a copper chaperone, can functional complements the yeast COX17 null mutant. May play a role in the delivery of copper to mitochondria. Expressed in roots and thus may also play a role in copper transport in the roots. O.I. C.G. H.G.
40.9 99.8 47.3 At4g28703 828989 - F:molecular_function unknown;P:unknown;C:cellular_component unknown;BOP O.I. C.G. H.G.
40.3 99.8 338.2 At4g15800 827260 RALFL33 (ralf-like 33) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. C.G. H.G.
38.8 99.8 213.3 At5g03455 831832 CDC25 Encodes a homolog of yeast cell cycle regulator CDC25. It has a sole catalytic domain and devoid of the N-terminal regulatory region found in the human CDC25 and is capable of reducing the mitotic cell length of transformed fission yeast. Non-plant CDC25 proteins have been shown to do this. However, the gene is more or less constant, regardless of whether the tissue examined contained proliferative cells. Also described as having arsenate reductase activity involved in arsenate resistance. O.I. C.G. H.G.
38.3 99.8 71.1 At2g19350 816452 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP O.I. C.G. H.G.
37.9 99.8 139.0 At1g76960 844031 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
37.7 99.7 56.1 At3g48020 823957 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
37.6 99.7 169.3 At2g32090 817769 lactoylglutathione lyase family protein / glyoxalase I family protein F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BPOFMA O.I. C.G. H.G.
35.1 99.7 62.3 At2g21195 816656 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P O.I. C.G. H.G.
34.6 99.7 530.0 At5g66040 836734 STR16 (SULFURTRANSFERASE PROTEIN 16) F:molecular_function unknown;P:aging;C:cellular_component unknown;BOPMAF O.I. C.G. H.G.
34.6 99.7 154.0 At5g25760 832645 PEX4 (PEROXIN4) mutant displays sucrose-dependent seedling development and reduced lateral root production. PEX4 interacts with PEX22 in a yeast two-hybrid. Necessary for peroxisome biogenesis. The PEX4 and PEX22 pair may be important during the remodeling of peroxisome matrix contents as glyoxysomes transition to leaf peroxisomes. O.I. C.G. H.G.
34.6 99.7 64.2 At5g18060 831310 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
34.5 99.7 150.0 At2g17450 816251 RHA3A Encodes a putative RING-H2 finger protein RHA3a. O.I. C.G. H.G.
32.7 99.7 49.1 At1g48330 841253 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
32.5 99.7 300.9 At1g19960 838585 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB O.I. C.G. H.G.
30.3 99.7 186.6 At3g18250 821353 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMFO O.I. C.G. H.G.
30.2 99.7 189.5 At1g11530 837696 ATCXXS1 (C-terminal cysteine residue is changed to a serine 1) Encodes a monocysteinic thioredoxin, thioredoxin in which the second cysteine of the redox site is replaced by a serine, with low disulfide reductase but efficient disulfide isomerase activity. O.I. C.G. H.G.
28.7 99.7 86.9 At5g05950 830480 MEE60 (maternal effect embryo arrest 60) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;P O.I. C.G. H.G.
27.1 99.7 69.1 At5g05300 830412 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
27.0 99.7 135.7 At5g07960 830690 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;MPO O.I. C.G. H.G.
26.6 99.7 287.4 At4g29735 829095 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO O.I. C.G. H.G.
26.6 99.7 122.6 At5g62575 836378 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
25.8 99.7 27.6 At1g72240 843556 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
25.5 99.7 39.2 At5g44170 834440 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOB O.I. C.G. H.G.
25.4 99.6 90.6 At2g05630 815112 autophagy 8d (APG8d) in the Arabidopsis autophagy pathway O.I. C.G. H.G.
25.2 99.6 364.6 At5g67600 836896 unknown protein F:unknown;P:unknown;C:plasma membrane;MOPFBV O.I. C.G. H.G.
24.5 99.6 59.3 At3g23805 821963 RALFL24 (ralf-like 24) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. C.G. H.G.
24.2 99.6 219.7 At4g05070 825849 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
24.2 99.6 34.0 At5g23460 832412 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
24.1 99.6 68.2 At2g27580 817304 zinc finger (AN1-like) family protein F:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVF O.I. C.G. H.G.
23.9 99.6 66.3 At3g44735 823603 PSK1 Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor. O.I. C.G. H.G.
23.8 99.6 746.4 At1g64230 842728 ubiquitin-conjugating enzyme, putative F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:plasma membrane;MFOPV O.I. C.G. H.G.
23.7 99.6 290.7 At1g15120 838075 ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative F:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrion, mitochondrial respiratory chain complex III;MPOF O.I. C.G. H.G.
22.9 99.6 378.3 At2g15960 816091 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
22.8 99.6 147.1 At2g45170 819125 AtATG8e Involved in autophagy. Under nutrient starvation the protein localizes to autophagosomes. O.I. C.G. H.G.
22.8 99.6 62.0 At5g59080 836025 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:chloroplast;P O.I. C.G. H.G.
22.4 99.6 14.7 At1g19510 838537 ATRL5 (ARABIDOPSIS RAD-LIKE 5) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;PMO O.I. C.G. H.G.
21.9 99.6 1130.8 At5g15960 831453 KIN1 cold and ABA inducible protein kin1, possibly functions as an anti-freeze protein. Transcript level of this gene is induced by cold, ABA, dehydration and osmoticum (mannitol). However, protein activity of GUS fused to the promoter of this gene is inhibited by cold treatment, suggesting an inhibition of the protein by increased transcript level. O.I. C.G. H.G.
21.6 99.6 25.9 At3g03180 821059 Got1-like family protein F:molecular_function unknown;P:vesicle-mediated transport;C:cellular_component unknown;MFOP O.I. C.G. H.G.
21.4 99.6 241.8 At2g42310 818832 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, respiratory chain complex I;PFM O.I. C.G. H.G.
20.8 99.6 263.8 At4g36500 829802 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
20.6 99.6 17.0 At1g75250 843862 ATRL6 (ARABIDOPSIS RAD-LIKE 6) F:transcription factor activity;P:regulation of transcription;C:unknown;PMO O.I. C.G. H.G.
20.5 99.6 256.6 At1g77710 844107 - F:unknown;P:biological_process unknown;C:cellular_component unknown;MOP O.I. C.G. H.G.
19.6 99.6 212.2 At1g78020 844137 senescence-associated protein-related F:unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
19.5 99.6 248.5 At4g13520 826984 SMAP1 (SMALL ACIDIC PROTEIN 1) Encodes a small acid protein (SMAP1) that mediates responses Arabidopsis root to the synthetic auxin 2,4-Dichlorophenoxyacetic acid. O.I. C.G. H.G.
19.3 99.6 36.6 At4g23870 828486 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
19.2 99.6 168.6 At3g47836 823939 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
18.6 99.5 30.4 At1g06160 837125 ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. O.I. C.G. H.G.
18.4 99.5 67.4 At4g12970 826909 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
18.3 99.5 123.3 At2g15050 815994 LTP Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
18.3 99.5 40.4 At3g19660 821503 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
18.2 99.5 64.9 At4g27654 828878 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
17.8 99.5 49.4 At3g20310 821575 ERF7 (ETHYLINE RESPONSE FACTOR 7) Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-7). The protein contains one AP2 domain. Phosphorylated by PKS3 in vitro. Involved in ABA-mediated responses. Acts as a repressor of GCC box�mediated transcription together with AtSin3 and HDA19. O.I. C.G. H.G.
17.7 99.5 26.2 At3g44020 823519 thylakoid lumenal P17.1 protein F:unknown;P:unknown;C:chloroplast thylakoid lumen;PO O.I. C.G. H.G.
17.6 99.5 86.8 At5g60460 836167 sec61beta family protein F:protein transporter activity;P:protein transport;C:plasma membrane;MFPOB O.I. C.G. H.G.
17.5 99.5 91.9 At5g42850 834296 - F:unknown;P:cell redox homeostasis;C:cellular_component unknown;MFPO O.I. C.G. H.G.
16.9 99.5 192.6 At2g24790 817016 COL3 (CONSTANS-LIKE 3) Positive regulator of photomorphogenesis that acts downstream of COP1 but can promote lateral root development independently of COP1 and also function as a daylength-sensitive regulator of shoot branching. O.I. C.G. H.G.
16.7 99.5 216.0 At5g24165 832483 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
16.4 99.5 59.7 At3g06780 819863 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA O.I. C.G. H.G.
16.3 99.5 769.9 At5g27700 832832 structural constituent of ribosome F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, ribosome;MFOP O.I. C.G. H.G.
15.4 99.5 462.6 At2g42540 818854 COR15A (COLD-REGULATED 15A) A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope. O.I. C.G. H.G.
15.3 99.4 336.0 At4g21105 827858 cytochrome-c oxidase/ electron carrier F:electron carrier activity, cytochrome-c oxidase activity;P:unknown;C:mitochondrion, plasma membrane;P O.I. C.G. H.G.
15.3 99.4 66.1 At2g44360 819043 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
15.1 99.4 178.0 At5g03345 831867 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO O.I. C.G. H.G.
15.0 99.4 306.8 At4g30650 829188 hydrophobic protein, putative / low temperature and salt responsive protein, putative F:unknown;P:response to salt stress, hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;BFPMO O.I. C.G. H.G.
15.0 99.4 15.5 At2g18350 816350 AtHB24 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 24) F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
14.9 99.4 820.9 At3g09390 820098 MT2A (METALLOTHIONEIN 2A) metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage O.I. C.G. H.G.
14.8 99.4 207.1 At4g21620 828249 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
14.7 99.4 105.6 At2g25735 817115 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
14.7 99.4 55.8 At2g21180 816653 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.3 99.4 217.3 At5g44580 834486 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
14.3 99.4 143.2 At1g71950 843526 identical protein binding / serine-type endopeptidase F:identical protein binding, serine-type endopeptidase activity;P:negative regulation of catalytic activity;C:plasma membrane;P O.I. C.G. H.G.
14.3 99.4 66.6 At4g09550 826539 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
14.2 99.4 915.2 At3g22240 821794 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
351.0	100.0	195.3	At5g50335	835100	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
220.2	100.0	525.0	At3g16570	820907	RALFL23 (ralf-like 23)	Encodes RALF23, a member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. RALF23 is significantly downregulated by brassinolide treatment of seedlings. Overexpression of AtRALF23 impairs brassinolide-induced hypocotyls elongation, and mature overexpressing plants are shorter and bushier. RALF23 overexpression produces slower growing seedlings with roots that have reduced capacity to acidify the rhizosphere.	O.I.	C.G.	H.G.
203.4	100.0	48.4	At3g28310	822458	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
117.1	99.9	44.7	At1g43590	840943	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
112.4	99.9	225.8	At1g30260	839906	-	F:molecular_function unknown;P:response to cytokinin stimulus;C:unknown;P	O.I.	C.G.	H.G.
109.4	99.9	75.5	At1g28070	839700	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
96.0	99.9	254.1	At3g14430	820666	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:mitochondrion;P	O.I.	C.G.	H.G.
87.8	99.9	135.8	At4g38860	830041	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
82.4	99.9	22.3	At2g40530	818648	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
79.6	99.9	39.7	At5g35480	833512	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
66.0	99.8	183.5	At4g34760	829628	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
56.6	99.8	142.5	At1g12845	837841	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
56.3	99.8	81.3	At3g03870	821099	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
54.1	99.8	141.5	At1g53885	841826	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
52.9	99.8	51.9	At4g24370	828539	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
52.0	99.8	109.6	At2g24040	816938	hydrophobic protein, putative / low temperature and salt responsive protein, putative	F:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;PFBMO	O.I.	C.G.	H.G.
51.7	99.8	178.7	At1g15010	838066	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PB	O.I.	C.G.	H.G.
51.3	99.8	80.3	At5g64880	836611	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
49.0	99.8	203.3	At1g22890	838896	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
47.9	99.8	98.8	At5g40500	834048	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
47.6	99.8	98.9	At4g33960	829542	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
47.5	99.8	89.1	At3g13910	820604	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
46.5	99.8	43.3	At5g55790	835673	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
46.0	99.8	69.2	At1g77540	844090	H3/H4 histone acetyltransferase	Encodes a H3/H4 histone acetyltransferase. Belongs to the GNAT family, whose many members are involved in histone acetylation and chromatin remodeling, and are important for the regulation of cell growth and development.	O.I.	C.G.	H.G.
45.2	99.8	162.7	At1g62040	842499	ATG8C (autophagy 8c)	F:microtubule binding;P:autophagy;C:unknown;MOPFV	O.I.	C.G.	H.G.
42.0	99.8	67.3	At4g01897	828216	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBP	O.I.	C.G.	H.G.
41.3	99.8	58.7	At1g53030	841736	cytochrome c oxidase copper chaperone family protein	encodes a copper chaperone, can functional complements the yeast COX17 null mutant. May play a role in the delivery of copper to mitochondria. Expressed in roots and thus may also play a role in copper transport in the roots.	O.I.	C.G.	H.G.
40.9	99.8	47.3	At4g28703	828989	-	F:molecular_function unknown;P:unknown;C:cellular_component unknown;BOP	O.I.	C.G.	H.G.
40.3	99.8	338.2	At4g15800	827260	RALFL33 (ralf-like 33)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	C.G.	H.G.
38.8	99.8	213.3	At5g03455	831832	CDC25	Encodes a homolog of yeast cell cycle regulator CDC25. It has a sole catalytic domain and devoid of the N-terminal regulatory region found in the human CDC25 and is capable of reducing the mitotic cell length of transformed fission yeast. Non-plant CDC25 proteins have been shown to do this. However, the gene is more or less constant, regardless of whether the tissue examined contained proliferative cells. Also described as having arsenate reductase activity involved in arsenate resistance.	O.I.	C.G.	H.G.
38.3	99.8	71.1	At2g19350	816452	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP	O.I.	C.G.	H.G.
37.9	99.8	139.0	At1g76960	844031	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
37.7	99.7	56.1	At3g48020	823957	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
37.6	99.7	169.3	At2g32090	817769	lactoylglutathione lyase family protein / glyoxalase I family protein	F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BPOFMA	O.I.	C.G.	H.G.
35.1	99.7	62.3	At2g21195	816656	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
34.6	99.7	530.0	At5g66040	836734	STR16 (SULFURTRANSFERASE PROTEIN 16)	F:molecular_function unknown;P:aging;C:cellular_component unknown;BOPMAF	O.I.	C.G.	H.G.
34.6	99.7	154.0	At5g25760	832645	PEX4 (PEROXIN4)	mutant displays sucrose-dependent seedling development and reduced lateral root production. PEX4 interacts with PEX22 in a yeast two-hybrid. Necessary for peroxisome biogenesis. The PEX4 and PEX22 pair may be important during the remodeling of peroxisome matrix contents as glyoxysomes transition to leaf peroxisomes.	O.I.	C.G.	H.G.
34.6	99.7	64.2	At5g18060	831310	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
34.5	99.7	150.0	At2g17450	816251	RHA3A	Encodes a putative RING-H2 finger protein RHA3a.	O.I.	C.G.	H.G.
32.7	99.7	49.1	At1g48330	841253	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
32.5	99.7	300.9	At1g19960	838585	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB	O.I.	C.G.	H.G.
30.3	99.7	186.6	At3g18250	821353	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMFO	O.I.	C.G.	H.G.
30.2	99.7	189.5	At1g11530	837696	ATCXXS1 (C-terminal cysteine residue is changed to a serine 1)	Encodes a monocysteinic thioredoxin, thioredoxin in which the second cysteine of the redox site is replaced by a serine, with low disulfide reductase but efficient disulfide isomerase activity.	O.I.	C.G.	H.G.
28.7	99.7	86.9	At5g05950	830480	MEE60 (maternal effect embryo arrest 60)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;P	O.I.	C.G.	H.G.
27.1	99.7	69.1	At5g05300	830412	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
27.0	99.7	135.7	At5g07960	830690	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;MPO	O.I.	C.G.	H.G.
26.6	99.7	287.4	At4g29735	829095	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO	O.I.	C.G.	H.G.
26.6	99.7	122.6	At5g62575	836378	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
25.8	99.7	27.6	At1g72240	843556	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
25.5	99.7	39.2	At5g44170	834440	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOB	O.I.	C.G.	H.G.
25.4	99.6	90.6	At2g05630	815112	autophagy 8d (APG8d)	in the Arabidopsis autophagy pathway	O.I.	C.G.	H.G.
25.2	99.6	364.6	At5g67600	836896	unknown protein	F:unknown;P:unknown;C:plasma membrane;MOPFBV	O.I.	C.G.	H.G.
24.5	99.6	59.3	At3g23805	821963	RALFL24 (ralf-like 24)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	C.G.	H.G.
24.2	99.6	219.7	At4g05070	825849	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
24.2	99.6	34.0	At5g23460	832412	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
24.1	99.6	68.2	At2g27580	817304	zinc finger (AN1-like) family protein	F:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVF	O.I.	C.G.	H.G.
23.9	99.6	66.3	At3g44735	823603	PSK1	Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor.	O.I.	C.G.	H.G.
23.8	99.6	746.4	At1g64230	842728	ubiquitin-conjugating enzyme, putative	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:plasma membrane;MFOPV	O.I.	C.G.	H.G.
23.7	99.6	290.7	At1g15120	838075	ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative	F:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrion, mitochondrial respiratory chain complex III;MPOF	O.I.	C.G.	H.G.
22.9	99.6	378.3	At2g15960	816091	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.8	99.6	147.1	At2g45170	819125	AtATG8e	Involved in autophagy. Under nutrient starvation the protein localizes to autophagosomes.	O.I.	C.G.	H.G.
22.8	99.6	62.0	At5g59080	836025	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:chloroplast;P	O.I.	C.G.	H.G.
22.4	99.6	14.7	At1g19510	838537	ATRL5 (ARABIDOPSIS RAD-LIKE 5)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;PMO	O.I.	C.G.	H.G.
21.9	99.6	1130.8	At5g15960	831453	KIN1	cold and ABA inducible protein kin1, possibly functions as an anti-freeze protein. Transcript level of this gene is induced by cold, ABA, dehydration and osmoticum (mannitol). However, protein activity of GUS fused to the promoter of this gene is inhibited by cold treatment, suggesting an inhibition of the protein by increased transcript level.	O.I.	C.G.	H.G.
21.6	99.6	25.9	At3g03180	821059	Got1-like family protein	F:molecular_function unknown;P:vesicle-mediated transport;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
21.4	99.6	241.8	At2g42310	818832	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, respiratory chain complex I;PFM	O.I.	C.G.	H.G.
20.8	99.6	263.8	At4g36500	829802	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
20.6	99.6	17.0	At1g75250	843862	ATRL6 (ARABIDOPSIS RAD-LIKE 6)	F:transcription factor activity;P:regulation of transcription;C:unknown;PMO	O.I.	C.G.	H.G.
20.5	99.6	256.6	At1g77710	844107	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;MOP	O.I.	C.G.	H.G.
19.6	99.6	212.2	At1g78020	844137	senescence-associated protein-related	F:unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
19.5	99.6	248.5	At4g13520	826984	SMAP1 (SMALL ACIDIC PROTEIN 1)	Encodes a small acid protein (SMAP1) that mediates responses Arabidopsis root to the synthetic auxin 2,4-Dichlorophenoxyacetic acid.	O.I.	C.G.	H.G.
19.3	99.6	36.6	At4g23870	828486	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.2	99.6	168.6	At3g47836	823939	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.6	99.5	30.4	At1g06160	837125	ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	O.I.	C.G.	H.G.
18.4	99.5	67.4	At4g12970	826909	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
18.3	99.5	123.3	At2g15050	815994	LTP	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
18.3	99.5	40.4	At3g19660	821503	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.2	99.5	64.9	At4g27654	828878	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
17.8	99.5	49.4	At3g20310	821575	ERF7 (ETHYLINE RESPONSE FACTOR 7)	Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-7). The protein contains one AP2 domain. Phosphorylated by PKS3 in vitro. Involved in ABA-mediated responses. Acts as a repressor of GCC box�mediated transcription together with AtSin3 and HDA19.	O.I.	C.G.	H.G.
17.7	99.5	26.2	At3g44020	823519	thylakoid lumenal P17.1 protein	F:unknown;P:unknown;C:chloroplast thylakoid lumen;PO	O.I.	C.G.	H.G.
17.6	99.5	86.8	At5g60460	836167	sec61beta family protein	F:protein transporter activity;P:protein transport;C:plasma membrane;MFPOB	O.I.	C.G.	H.G.
17.5	99.5	91.9	At5g42850	834296	-	F:unknown;P:cell redox homeostasis;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
16.9	99.5	192.6	At2g24790	817016	COL3 (CONSTANS-LIKE 3)	Positive regulator of photomorphogenesis that acts downstream of COP1 but can promote lateral root development independently of COP1 and also function as a daylength-sensitive regulator of shoot branching.	O.I.	C.G.	H.G.
16.7	99.5	216.0	At5g24165	832483	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
16.4	99.5	59.7	At3g06780	819863	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA	O.I.	C.G.	H.G.
16.3	99.5	769.9	At5g27700	832832	structural constituent of ribosome	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, ribosome;MFOP	O.I.	C.G.	H.G.
15.4	99.5	462.6	At2g42540	818854	COR15A (COLD-REGULATED 15A)	A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope.	O.I.	C.G.	H.G.
15.3	99.4	336.0	At4g21105	827858	cytochrome-c oxidase/ electron carrier	F:electron carrier activity, cytochrome-c oxidase activity;P:unknown;C:mitochondrion, plasma membrane;P	O.I.	C.G.	H.G.
15.3	99.4	66.1	At2g44360	819043	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
15.1	99.4	178.0	At5g03345	831867	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO	O.I.	C.G.	H.G.
15.0	99.4	306.8	At4g30650	829188	hydrophobic protein, putative / low temperature and salt responsive protein, putative	F:unknown;P:response to salt stress, hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;BFPMO	O.I.	C.G.	H.G.
15.0	99.4	15.5	At2g18350	816350	AtHB24 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 24)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.9	99.4	820.9	At3g09390	820098	MT2A (METALLOTHIONEIN 2A)	metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage	O.I.	C.G.	H.G.
14.8	99.4	207.1	At4g21620	828249	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
14.7	99.4	105.6	At2g25735	817115	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
14.7	99.4	55.8	At2g21180	816653	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.3	99.4	217.3	At5g44580	834486	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
14.3	99.4	143.2	At1g71950	843526	identical protein binding / serine-type endopeptidase	F:identical protein binding, serine-type endopeptidase activity;P:negative regulation of catalytic activity;C:plasma membrane;P	O.I.	C.G.	H.G.
14.3	99.4	66.6	At4g09550	826539	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
14.2	99.4	915.2	At3g22240	821794	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.

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GSM ID	GSM173443
Assay name	wild-type Arabidopsis, biological rep2
GSE experiment	GSE7211: A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana

Microarray experiments to specifically-expressed genes

GSM ID GSM173443 Assay name wild-type Arabidopsis, biological rep2 GSE experiment GSE7211: A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana

GSM ID GSM173443

Assay name wild-type Arabidopsis, biological rep2

GSE experiment GSE7211: A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana