CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM170931

Assay name Col-0 +ABA repl2

GSE experiment GSE7112: Abscisic acid effect on wild type and the abh1 mutant

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
20.1 99.6 36.3 At3g15650 820808 phospholipase/carboxylesterase family protein F:hydrolase activity, carboxylesterase activity;P:unknown;C:unknown;BOMFPA O.I. C.G. H.G.
19.7 99.6 68.3 At1g36280 840534 adenylosuccinate lyase, putative / adenylosuccinase, putative F:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, catalytic activity;P:purine ribonucleotide biosynthetic process, purine base biosynthetic process, IMP biosynthetic process;C:chloroplast;BOMFAP O.I. C.G. H.G.
17.4 99.5 68.7 At1g52000 841629 jacalin lectin family protein F:molecular_function unknown;P:response to salt stress;C:cellular_component unknown;BOMPFVA O.I. C.G. H.G.
17.3 99.5 115.1 At1g73480 843683 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOPMFVA O.I. C.G. H.G.
16.5 99.5 19.8 At2g40435 818637 - F:unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
15.1 99.4 8.6 At4g13810 827015 AtRLP47 (Receptor Like Protein 47) F:protein binding;P:signal transduction, defense response;C:unknown;PMOBFAV O.I. C.G. H.G.
14.8 99.4 12.6 At4g16880 827396 disease resistance protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOM O.I. C.G. H.G.
12.9 99.3 129.3 At4g08870 826458 arginase, putative Encodes one of the two arginase in the genome. Gene expression is enhanced by methyl jasmonate treatment. O.I. C.G. H.G.
12.7 99.3 76.2 At5g10180 830882 AST68 Encodes a low-affinity sulfate transporter expressed in the root cap and central cylinder, where it is induced by sulfur starvation. Expression in the shoot vascular system is not induced by sulfur starvation. O.I. C.G. H.G.
12.5 99.3 143.9 At1g29395 839815 COR414-TM1 encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane. O.I. C.G. H.G.
12.3 99.3 183.8 At2g33380 817901 RD20 (RESPONSIVE TO DESSICATION 20) Encodes a calcium binding protein whose mRNA is induced upon treatment with NaCl, ABA and in response to dessication. mRNA expression under drought conditions is apparent particularly in leaves and flowers. O.I. C.G. H.G.
12.2 99.3 32.1 At1g65860 842897 FMO GS-OX1 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1) belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates O.I. C.G. H.G.
11.5 99.3 46.7 At2g43010 818903 PIF4 (phytochrome interacting factor 4) Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB. O.I. C.G. H.G.
11.4 99.3 289.9 At4g23600 828460 CORI3 (CORONATINE INDUCED 1) Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding. O.I. C.G. H.G.
11.4 99.3 14.8 At4g13800 827014 permease-related F:unknown;P:biological_process unknown;C:plasma membrane;MFPOB O.I. C.G. H.G.
11.3 99.3 64.9 At1g53885 841826 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.5 99.2 25.5 At2g41870 818787 remorin family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;POMFB O.I. C.G. H.G.
10.3 99.2 35.1 At2g32870 817848 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
10.2 99.2 128.6 At3g28220 822448 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:response to salt stress;C:vacuole, chloroplast envelope;PMO O.I. C.G. H.G.
10.0 99.2 14.9 At3g28130 822437 nodulin MtN21 family protein F:unknown;P:biological_process unknown;C:membrane;PBOMA O.I. C.G. H.G.
9.7 99.1 126.5 At1g78680 844204 ATGGH2 (gamma-glutamyl hydrolase 2) The Arabidopsis protein AtGGH2 is a gamma-glutamyl hydrolase acting specifically on monoglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole. O.I. C.G. H.G.
9.3 99.1 91.7 At1g70820 843419 phosphoglucomutase, putative / glucose phosphomutase, putative F:intramolecular transferase activity, phosphotransferases;P:carbohydrate metabolic process;C:chloroplast;BOAMPF O.I. C.G. H.G.
9.2 99.1 210.5 At2g47510 819364 FUM1 (FUMARASE 1) fumarase (FUM1) O.I. C.G. H.G.
9.1 99.1 6.9 At4g24010 828501 ATCSLG1 encodes a protein similar to cellulose synthase O.I. C.G. H.G.
9.0 99.1 51.9 At5g02940 831426 - F:unknown;P:unknown;C:chloroplast, chloroplast envelope;POB O.I. C.G. H.G.
8.8 99.0 105.6 At3g02020 821287 AK3 (ASPARTATE KINASE 3) encodes a monofunctional aspartate kinase O.I. C.G. H.G.
8.7 99.0 141.8 At4g19170 827655 NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4) chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenase O.I. C.G. H.G.
8.7 99.0 57.1 At3g26290 822232 CYP71B26 putative cytochrome P450 O.I. C.G. H.G.
8.6 99.0 38.1 At2g23840 816916 HNH endonuclease domain-containing protein F:endonuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OBVPA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
20.1	99.6	36.3	At3g15650	820808	phospholipase/carboxylesterase family protein	F:hydrolase activity, carboxylesterase activity;P:unknown;C:unknown;BOMFPA	O.I.	C.G.	H.G.
19.7	99.6	68.3	At1g36280	840534	adenylosuccinate lyase, putative / adenylosuccinase, putative	F:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, catalytic activity;P:purine ribonucleotide biosynthetic process, purine base biosynthetic process, IMP biosynthetic process;C:chloroplast;BOMFAP	O.I.	C.G.	H.G.
17.4	99.5	68.7	At1g52000	841629	jacalin lectin family protein	F:molecular_function unknown;P:response to salt stress;C:cellular_component unknown;BOMPFVA	O.I.	C.G.	H.G.
17.3	99.5	115.1	At1g73480	843683	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOPMFVA	O.I.	C.G.	H.G.
16.5	99.5	19.8	At2g40435	818637	-	F:unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
15.1	99.4	8.6	At4g13810	827015	AtRLP47 (Receptor Like Protein 47)	F:protein binding;P:signal transduction, defense response;C:unknown;PMOBFAV	O.I.	C.G.	H.G.
14.8	99.4	12.6	At4g16880	827396	disease resistance protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOM	O.I.	C.G.	H.G.
12.9	99.3	129.3	At4g08870	826458	arginase, putative	Encodes one of the two arginase in the genome. Gene expression is enhanced by methyl jasmonate treatment.	O.I.	C.G.	H.G.
12.7	99.3	76.2	At5g10180	830882	AST68	Encodes a low-affinity sulfate transporter expressed in the root cap and central cylinder, where it is induced by sulfur starvation. Expression in the shoot vascular system is not induced by sulfur starvation.	O.I.	C.G.	H.G.
12.5	99.3	143.9	At1g29395	839815	COR414-TM1	encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.	O.I.	C.G.	H.G.
12.3	99.3	183.8	At2g33380	817901	RD20 (RESPONSIVE TO DESSICATION 20)	Encodes a calcium binding protein whose mRNA is induced upon treatment with NaCl, ABA and in response to dessication. mRNA expression under drought conditions is apparent particularly in leaves and flowers.	O.I.	C.G.	H.G.
12.2	99.3	32.1	At1g65860	842897	FMO GS-OX1 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1)	belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates	O.I.	C.G.	H.G.
11.5	99.3	46.7	At2g43010	818903	PIF4 (phytochrome interacting factor 4)	Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB.	O.I.	C.G.	H.G.
11.4	99.3	289.9	At4g23600	828460	CORI3 (CORONATINE INDUCED 1)	Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding.	O.I.	C.G.	H.G.
11.4	99.3	14.8	At4g13800	827014	permease-related	F:unknown;P:biological_process unknown;C:plasma membrane;MFPOB	O.I.	C.G.	H.G.
11.3	99.3	64.9	At1g53885	841826	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.5	99.2	25.5	At2g41870	818787	remorin family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
10.3	99.2	35.1	At2g32870	817848	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
10.2	99.2	128.6	At3g28220	822448	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:response to salt stress;C:vacuole, chloroplast envelope;PMO	O.I.	C.G.	H.G.
10.0	99.2	14.9	At3g28130	822437	nodulin MtN21 family protein	F:unknown;P:biological_process unknown;C:membrane;PBOMA	O.I.	C.G.	H.G.
9.7	99.1	126.5	At1g78680	844204	ATGGH2 (gamma-glutamyl hydrolase 2)	The Arabidopsis protein AtGGH2 is a gamma-glutamyl hydrolase acting specifically on monoglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole.	O.I.	C.G.	H.G.
9.3	99.1	91.7	At1g70820	843419	phosphoglucomutase, putative / glucose phosphomutase, putative	F:intramolecular transferase activity, phosphotransferases;P:carbohydrate metabolic process;C:chloroplast;BOAMPF	O.I.	C.G.	H.G.
9.2	99.1	210.5	At2g47510	819364	FUM1 (FUMARASE 1)	fumarase (FUM1)	O.I.	C.G.	H.G.
9.1	99.1	6.9	At4g24010	828501	ATCSLG1	encodes a protein similar to cellulose synthase	O.I.	C.G.	H.G.
9.0	99.1	51.9	At5g02940	831426	-	F:unknown;P:unknown;C:chloroplast, chloroplast envelope;POB	O.I.	C.G.	H.G.
8.8	99.0	105.6	At3g02020	821287	AK3 (ASPARTATE KINASE 3)	encodes a monofunctional aspartate kinase	O.I.	C.G.	H.G.
8.7	99.0	141.8	At4g19170	827655	NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4)	chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenase	O.I.	C.G.	H.G.
8.7	99.0	57.1	At3g26290	822232	CYP71B26	putative cytochrome P450	O.I.	C.G.	H.G.
8.6	99.0	38.1	At2g23840	816916	HNH endonuclease domain-containing protein	F:endonuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OBVPA	O.I.	C.G.	H.G.

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GSM ID	GSM170931
Assay name	Col-0 +ABA repl2
GSE experiment	GSE7112: Abscisic acid effect on wild type and the abh1 mutant

Microarray experiments to specifically-expressed genes

GSM ID GSM170931 Assay name Col-0 +ABA repl2 GSE experiment GSE7112: Abscisic acid effect on wild type and the abh1 mutant

GSM ID GSM170931

Assay name Col-0 +ABA repl2

GSE experiment GSE7112: Abscisic acid effect on wild type and the abh1 mutant