CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM170923

Assay name Col-0 -ABA repl2

GSE experiment GSE7112: Abscisic acid effect on wild type and the abh1 mutant

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
24.9 99.6 18.6 At1g29460 839822 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;P O.I. C.G. H.G.
20.9 99.6 15.0 At4g16880 827396 disease resistance protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOM O.I. C.G. H.G.
19.7 99.6 54.0 At5g35490 833513 unknown protein Encodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine. O.I. C.G. H.G.
14.5 99.4 41.7 At2g32870 817848 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
14.3 99.4 64.0 At4g12980 826910 auxin-responsive protein, putative F:unknown;P:multicellular organismal development;C:membrane;PMFOB O.I. C.G. H.G.
13.9 99.4 28.0 At3g62750 825450 BGLU8 (BETA GLUCOSIDASE 8) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:vacuole;BOPMFA O.I. C.G. H.G.
13.7 99.4 62.1 At5g45820 834622 CIPK20 (CBL-INTERACTING PROTEIN KINASE 20) Encodes a CBL-interacting serine/threonine protein kinase comprised of an N-terminal kinase catalytic domain similar to SNF1/AMPK and a unique C-terminal regulatory domain. O.I. C.G. H.G.
13.4 99.4 147.5 At5g16030 831460 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA O.I. C.G. H.G.
13.0 99.4 37.2 At1g13650 837926 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
12.7 99.3 76.2 At5g10180 830882 AST68 Encodes a low-affinity sulfate transporter expressed in the root cap and central cylinder, where it is induced by sulfur starvation. Expression in the shoot vascular system is not induced by sulfur starvation. O.I. C.G. H.G.
12.4 99.3 48.6 At2g43010 818903 PIF4 (phytochrome interacting factor 4) Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB. O.I. C.G. H.G.
12.3 99.3 29.9 At5g39860 833982 PRE1 (PACLOBUTRAZOL RESISTANCE1) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
11.6 99.3 24.5 At1g68190 843148 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM O.I. C.G. H.G.
11.6 99.3 9.3 At1g77960 844131 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV O.I. C.G. H.G.
11.2 99.2 142.0 At1g75460 843882 ATP-dependent protease La (LON) domain-containing protein F:ATP-dependent peptidase activity;P:ATP-dependent proteolysis;C:chloroplast;OBMPF O.I. C.G. H.G.
11.0 99.2 15.6 At3g28130 822437 nodulin MtN21 family protein F:unknown;P:biological_process unknown;C:membrane;PBOMA O.I. C.G. H.G.
10.8 99.2 39.7 At3g53800 824547 armadillo/beta-catenin repeat family protein F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
10.4 99.2 154.6 At4g19170 827655 NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4) chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenase O.I. C.G. H.G.
10.2 99.2 19.4 At2g14080 815893 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PMOBFAV O.I. C.G. H.G.
10.0 99.2 70.0 At5g65840 836713 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;PMBOF O.I. C.G. H.G.
9.9 99.1 89.5 At2g29290 817478 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
9.9 99.1 23.5 At5g52900 835367 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.5 99.1 39.9 At1g73750 843710 - F:unknown;P:unknown;C:unknown;PBMO O.I. C.G. H.G.
9.4 99.1 50.7 At3g23080 821882 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MPO O.I. C.G. H.G.
9.3 99.1 108.3 At3g02020 821287 AK3 (ASPARTATE KINASE 3) encodes a monofunctional aspartate kinase O.I. C.G. H.G.
9.2 99.1 36.6 At1g18620 838443 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV O.I. C.G. H.G.
9.0 99.1 19.2 At3g28080 822432 nodulin MtN21 family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PBOAM O.I. C.G. H.G.
8.8 99.0 52.3 At2g29310 817480 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
8.8 99.0 12.7 At1g33340 840228 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:clathrin coat;POFM O.I. C.G. H.G.
8.7 99.0 36.0 At1g29430 839819 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
8.7 99.0 6.5 At4g13810 827015 AtRLP47 (Receptor Like Protein 47) F:protein binding;P:signal transduction, defense response;C:unknown;PMOBFAV O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
24.9	99.6	18.6	At1g29460	839822	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;P	O.I.	C.G.	H.G.
20.9	99.6	15.0	At4g16880	827396	disease resistance protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOM	O.I.	C.G.	H.G.
19.7	99.6	54.0	At5g35490	833513	unknown protein	Encodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine.	O.I.	C.G.	H.G.
14.5	99.4	41.7	At2g32870	817848	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
14.3	99.4	64.0	At4g12980	826910	auxin-responsive protein, putative	F:unknown;P:multicellular organismal development;C:membrane;PMFOB	O.I.	C.G.	H.G.
13.9	99.4	28.0	At3g62750	825450	BGLU8 (BETA GLUCOSIDASE 8)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:vacuole;BOPMFA	O.I.	C.G.	H.G.
13.7	99.4	62.1	At5g45820	834622	CIPK20 (CBL-INTERACTING PROTEIN KINASE 20)	Encodes a CBL-interacting serine/threonine protein kinase comprised of an N-terminal kinase catalytic domain similar to SNF1/AMPK and a unique C-terminal regulatory domain.	O.I.	C.G.	H.G.
13.4	99.4	147.5	At5g16030	831460	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA	O.I.	C.G.	H.G.
13.0	99.4	37.2	At1g13650	837926	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
12.7	99.3	76.2	At5g10180	830882	AST68	Encodes a low-affinity sulfate transporter expressed in the root cap and central cylinder, where it is induced by sulfur starvation. Expression in the shoot vascular system is not induced by sulfur starvation.	O.I.	C.G.	H.G.
12.4	99.3	48.6	At2g43010	818903	PIF4 (phytochrome interacting factor 4)	Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB.	O.I.	C.G.	H.G.
12.3	99.3	29.9	At5g39860	833982	PRE1 (PACLOBUTRAZOL RESISTANCE1)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
11.6	99.3	24.5	At1g68190	843148	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM	O.I.	C.G.	H.G.
11.6	99.3	9.3	At1g77960	844131	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV	O.I.	C.G.	H.G.
11.2	99.2	142.0	At1g75460	843882	ATP-dependent protease La (LON) domain-containing protein	F:ATP-dependent peptidase activity;P:ATP-dependent proteolysis;C:chloroplast;OBMPF	O.I.	C.G.	H.G.
11.0	99.2	15.6	At3g28130	822437	nodulin MtN21 family protein	F:unknown;P:biological_process unknown;C:membrane;PBOMA	O.I.	C.G.	H.G.
10.8	99.2	39.7	At3g53800	824547	armadillo/beta-catenin repeat family protein	F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
10.4	99.2	154.6	At4g19170	827655	NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4)	chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenase	O.I.	C.G.	H.G.
10.2	99.2	19.4	At2g14080	815893	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
10.0	99.2	70.0	At5g65840	836713	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;PMBOF	O.I.	C.G.	H.G.
9.9	99.1	89.5	At2g29290	817478	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
9.9	99.1	23.5	At5g52900	835367	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.5	99.1	39.9	At1g73750	843710	-	F:unknown;P:unknown;C:unknown;PBMO	O.I.	C.G.	H.G.
9.4	99.1	50.7	At3g23080	821882	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPO	O.I.	C.G.	H.G.
9.3	99.1	108.3	At3g02020	821287	AK3 (ASPARTATE KINASE 3)	encodes a monofunctional aspartate kinase	O.I.	C.G.	H.G.
9.2	99.1	36.6	At1g18620	838443	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV	O.I.	C.G.	H.G.
9.0	99.1	19.2	At3g28080	822432	nodulin MtN21 family protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;PBOAM	O.I.	C.G.	H.G.
8.8	99.0	52.3	At2g29310	817480	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
8.8	99.0	12.7	At1g33340	840228	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	F:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:clathrin coat;POFM	O.I.	C.G.	H.G.
8.7	99.0	36.0	At1g29430	839819	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
8.7	99.0	6.5	At4g13810	827015	AtRLP47 (Receptor Like Protein 47)	F:protein binding;P:signal transduction, defense response;C:unknown;PMOBFAV	O.I.	C.G.	H.G.

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GSM ID	GSM170923
Assay name	Col-0 -ABA repl2
GSE experiment	GSE7112: Abscisic acid effect on wild type and the abh1 mutant

Microarray experiments to specifically-expressed genes

GSM ID GSM170923 Assay name Col-0 -ABA repl2 GSE experiment GSE7112: Abscisic acid effect on wild type and the abh1 mutant

GSM ID GSM170923

Assay name Col-0 -ABA repl2

GSE experiment GSE7112: Abscisic acid effect on wild type and the abh1 mutant