CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM170897

Assay name Col-0 +ABA repl1

GSE experiment GSE7112: Abscisic acid effect on wild type and the abh1 mutant

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
46.4 99.8 33.2 At2g40435 818637 - F:unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
34.0 99.7 107.1 At3g29575 822619 AFP3 (ABI FIVE BINDING PROTEIN 3) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
31.5 99.7 69.7 At3g26960 822314 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
25.6 99.7 227.0 At3g11410 820314 PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA) Encodes protein phosphatase 2C. Negative regulator of ABA signalling. Expressed in seeds during germination. mRNA up-regulated by drought and ABA. O.I. C.G. H.G.
24.1 99.6 12.8 At5g62040 836324 brother of FT and TFL1 protein (BFT) F:phosphatidylethanolamine binding;P:biological_process unknown;C:cellular_component unknown;PMFOVB O.I. C.G. H.G.
23.8 99.6 95.3 At1g60190 842314 armadillo/beta-catenin repeat family protein / U-box domain-containing protein F:ubiquitin-protein ligase activity, protein binding, binding, zinc ion binding;P:protein ubiquitination;C:ubiquitin ligase complex;PMOFBVA O.I. C.G. H.G.
22.1 99.6 103.9 At5g65840 836713 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;PMBOF O.I. C.G. H.G.
21.3 99.6 102.9 At5g59220 836040 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:response to water deprivation, response to abscisic acid stimulus;C:chloroplast;MPOFBV O.I. C.G. H.G.
21.0 99.6 35.3 At5g10930 830960 CIPK5 (CBL-INTERACTING PROTEIN KINASE 5) Encodes CBL-interacting protein kinase 5 (CIPK5). O.I. C.G. H.G.
20.0 99.6 60.5 At1g69260 843257 AFP1 (ABI FIVE BINDING PROTEIN) F:unknown;P:abscisic acid mediated signaling;C:nucleus;POMF O.I. C.G. H.G.
19.9 99.6 108.0 At1g53560 841791 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
19.9 99.6 82.1 At1g02816 839308 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;PO O.I. C.G. H.G.
19.8 99.6 137.6 At2g46100 819218 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO O.I. C.G. H.G.
19.6 99.6 21.1 At5g53710 835452 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
19.4 99.6 59.8 At3g44735 823603 PSK1 Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor. O.I. C.G. H.G.
19.4 99.6 57.2 At2g23840 816916 HNH endonuclease domain-containing protein F:endonuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OBVPA O.I. C.G. H.G.
19.1 99.6 44.6 At3g55500 824715 ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16) expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. O.I. C.G. H.G.
19.0 99.5 228.5 At2g33380 817901 RD20 (RESPONSIVE TO DESSICATION 20) Encodes a calcium binding protein whose mRNA is induced upon treatment with NaCl, ABA and in response to dessication. mRNA expression under drought conditions is apparent particularly in leaves and flowers. O.I. C.G. H.G.
18.7 99.5 189.2 At2g21970 816733 SEP2 (STRESS ENHANCED PROTEIN 2) stress enhanced protein 2 (SEP2) chlorophyll a/b-binding protein O.I. C.G. H.G.
18.3 99.5 50.8 At1g21790 838783 - F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MPO O.I. C.G. H.G.
18.1 99.5 185.5 At5g57040 835808 lactoylglutathione lyase family protein / glyoxalase I family protein F:catalytic activity;P:metabolic process;C:chloroplast;BPOM O.I. C.G. H.G.
18.0 99.5 87.6 At2g21185 816654 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
18.0 99.5 52.4 At1g66890 843007 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
17.9 99.5 112.6 At3g28270 822453 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMPOAFV O.I. C.G. H.G.
17.7 99.5 18.5 At4g13800 827014 permease-related F:unknown;P:biological_process unknown;C:plasma membrane;MFPOB O.I. C.G. H.G.
17.1 99.5 69.0 At5g58650 835979 PSY1 (plant peptide containing sulfated tyrosine 1) Encodes PSY1, an18-aa tyrosine-sulfated glycopeptide that promotes cellular proliferation and expansion. PSY1 is widely expressed in various tissues, including shoot apical meristem, and is highly up-regulated by wounding. Perception of PSY1 depends on At1g72300, a leucine-rich repeat receptor kinase (LRR-RK). O.I. C.G. H.G.
16.8 99.5 68.6 At5g01520 831747 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPVF O.I. C.G. H.G.
16.7 99.5 60.6 At2g16630 816164 proline-rich family protein F:unknown;P:unknown;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
16.5 99.5 49.6 At5g03230 831900 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
16.3 99.5 164.1 At1g29395 839815 COR414-TM1 encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane. O.I. C.G. H.G.
15.2 99.4 24.6 At3g13672 820573 seven in absentia (SINA) family protein F:molecular_function unknown;P:multicellular organismal development, ubiquitin-dependent protein catabolic process;C:nucleus;MPO O.I. C.G. H.G.
15.1 99.4 131.0 At2g46650 819277 CB5-C (CYTOCHROME B5 ISOFORM C) member of Cytochromes b5 O.I. C.G. H.G.
14.6 99.4 51.1 At2g25625 817103 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
14.4 99.4 17.8 At3g28130 822437 nodulin MtN21 family protein F:unknown;P:biological_process unknown;C:membrane;PBOMA O.I. C.G. H.G.
14.3 99.4 26.3 At1g31820 840072 amino acid permease family protein F:cationic amino acid transmembrane transporter activity;P:transport, amino acid transport;C:membrane;BFMOPA O.I. C.G. H.G.
14.0 99.4 133.1 At4g11570 826761 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;BOPMAF O.I. C.G. H.G.
12.9 99.3 152.1 At1g75460 843882 ATP-dependent protease La (LON) domain-containing protein F:ATP-dependent peptidase activity;P:ATP-dependent proteolysis;C:chloroplast;OBMPF O.I. C.G. H.G.
12.6 99.3 156.2 At1g29390 839814 COR314-TM2 encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Possibly targeted to thylakoid membrane. O.I. C.G. H.G.
12.6 99.3 25.2 At2g45660 819174 AGL20 (AGAMOUS-LIKE 20) Controls flowering and is required for CO to promote flowering. It acts downstream of FT. Overexpression of (SOC1) AGL20 suppresses not only the late flowering of plants that have functional FRI and FLC alleles but also the delayed phase transitions during the vegetative stages of development. AGL20/SOC1 acts with AGL24 to promote flowering and inflorescence meristem identity.AGL20 upregulates expression of AGL24 in response to GA. O.I. C.G. H.G.
12.5 99.3 60.1 At1g07720 837286 KCS3 (3-KETOACYL-COA SYNTHASE 3) Encodes KCS3, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
12.4 99.3 106.5 At1g13990 837959 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
12.4 99.3 20.2 At4g02360 827767 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
12.2 99.3 31.9 At5g50100 835074 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OBPM O.I. C.G. H.G.
12.2 99.3 27.5 At2g41870 818787 remorin family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;POMFB O.I. C.G. H.G.
12.0 99.3 408.6 At2g42540 818854 COR15A (COLD-REGULATED 15A) A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope. O.I. C.G. H.G.
12.0 99.3 156.1 At1g50020 841426 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P O.I. C.G. H.G.
12.0 99.3 92.2 At3g46630 823816 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO O.I. C.G. H.G.
11.9 99.3 114.6 At5g45950 834635 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
11.9 99.3 89.4 At2g41190 818718 amino acid transporter family protein F:amino acid transmembrane transporter activity;P:amino acid transport;C:plasma membrane, membrane;MPOFBAV O.I. C.G. H.G.
11.9 99.3 42.2 At1g47960 841214 C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1) Plant cell wall (CWI) and vacuolar invertases (VI) play important roles in carbohydrate metabolism, stress responses and sugar signaling. O.I. C.G. H.G.
11.8 99.3 170.7 At5g08410 830739 FTRA2 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2) F:ferredoxin:thioredoxin reductase activity, lipoate synthase activity, catalytic activity, ferredoxin reductase activity;P:photosynthesis, light reaction, lipoate biosynthetic process, photosynthesis;C:chloroplast;BPO O.I. C.G. H.G.
11.8 99.3 24.5 At5g22390 832300 unknown protein F:unknown;P:unknown;C:unknown;PMOF O.I. C.G. H.G.
11.7 99.3 102.8 At4g37980 829954 ELI3-1 (ELICITOR-ACTIVATED GENE 3-1) F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:response to bacterium, plant-type hypersensitive response;C:unknown;BOPFMAV O.I. C.G. H.G.
11.7 99.3 41.0 At1g78995 844240 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
11.7 99.3 23.2 At3g05340 819698 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF O.I. C.G. H.G.
11.6 99.3 118.0 At1g10500 837590 ATCPISCA (chloroplast-localized IscA-like protein) Involved in chloroplast Fe-S cluster assembly. Located in the chloroplast stroma. Expressed preferentially in green tissues. O.I. C.G. H.G.
11.3 99.3 167.0 At5g43850 834407 ARD4 F:acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding;P:methionine salvage;C:cellular_component unknown;PBMFO O.I. C.G. H.G.
11.3 99.3 57.7 At2g34810 818046 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to jasmonic acid stimulus, response to wounding;C:endomembrane system;FBPOAM O.I. C.G. H.G.
11.2 99.2 33.1 At1g32520 840146 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPO O.I. C.G. H.G.
11.1 99.2 40.7 At5g47330 834780 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:response to salt stress;C:endomembrane system;MPFO O.I. C.G. H.G.
10.9 99.2 209.9 At1g66100 842924 thionin, putative Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. O.I. C.G. H.G.
10.9 99.2 123.3 At2g26690 817210 nitrate transporter (NTP2) F:transporter activity;P:response to jasmonic acid stimulus, response to wounding;C:membrane;BPOMF O.I. C.G. H.G.
10.8 99.2 13.9 At1g24470 839063 short-chain dehydrogenase/reductase (SDR) family protein Encodes one of the two Arabidopsis homologues to YBR159w encoding a S. cerevisiae beta-ketoacyl reductase (KCR), which catalyzes the first reduction during VLCFA (very long chain fatty acids, >18 carbon) elongation: KCR1 (At1g67730), KCR2 (At1g24470). Complementation of the yeast ybr159Delta mutant demonstrated that the two KCR proteins are divergent and that only AtKCR1 can restore heterologous elongase activity similar to the native yeast KCR gene. O.I. C.G. H.G.
10.7 99.2 117.8 At5g43150 834332 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
10.7 99.2 53.6 At1g36380 840544 unknown protein F:unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
10.7 99.2 36.8 At2g01870 814718 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P O.I. C.G. H.G.
10.5 99.2 67.5 At3g61890 825362 ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Loss of function mutant has abnormally shaped leaves and stems. O.I. C.G. H.G.
10.5 99.2 40.9 At4g02130 827438 GATL6 Encodes a protein with putative galacturonosyltransferase activity. O.I. C.G. H.G.
10.5 99.2 29.8 At1g18000 838380 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMBPO O.I. C.G. H.G.
10.4 99.2 148.7 At5g18600 831978 glutaredoxin family protein F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
10.4 99.2 92.6 At3g19800 821517 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.3 99.2 53.5 At4g14020 827038 rapid alkalinization factor (RALF) family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.1 99.2 61.5 At5g47640 834815 NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO O.I. C.G. H.G.
10.1 99.2 13.2 At1g43590 840943 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
10.0 99.2 193.8 At1g53670 841804 MSRB1 (methionine sulfoxide reductase B 1) F:peptide-methionine-(S)-S-oxide reductase activity;P:response to oxidative stress, N-terminal protein myristoylation;C:chloroplast stroma, chloroplast;OBMPFAV O.I. C.G. H.G.
10.0 99.2 45.1 At5g40500 834048 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
9.9 99.1 10.3 At2g45630 819171 oxidoreductase family protein F:NAD or NADH binding, binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, catalytic activity;P:metabolic process;C:unknown;BOMAFP O.I. C.G. H.G.
9.8 99.1 38.1 At5g35490 833513 unknown protein Encodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine. O.I. C.G. H.G.
9.7 99.1 185.3 At4g37800 829936 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBO O.I. C.G. H.G.
9.7 99.1 96.4 At5g37360 833710 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P O.I. C.G. H.G.
9.6 99.1 81.4 At2g24860 817023 chaperone protein dnaJ-related F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;PBMOF O.I. C.G. H.G.
9.5 99.1 36.1 At3g52070 824370 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
9.4 99.1 98.0 At2g04039 814937 unknown protein F:molecular_function unknown;P:unknown;C:chloroplast;BOP O.I. C.G. H.G.
9.4 99.1 84.9 At1g73480 843683 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOPMFVA O.I. C.G. H.G.
9.3 99.1 138.2 At3g21670 821721 nitrate transporter (NTP3) F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF O.I. C.G. H.G.
9.3 99.1 57.7 At1g12845 837841 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
9.3 99.1 44.8 At3g06780 819863 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA O.I. C.G. H.G.
9.3 99.1 34.9 At1g56650 842120 PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1) Encodes a putative MYB domain containing transcription factor involved in anthocyanin metabolism and radical scavenging. Essential for the sucrose-mediated expression of the dihydroflavonol reductase gene. O.I. C.G. H.G.
9.2 99.1 37.8 At4g34480 829599 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO O.I. C.G. H.G.
9.1 99.1 99.8 At1g19740 838563 ATP-dependent protease La (LON) domain-containing protein F:ATP-dependent peptidase activity;P:ATP-dependent proteolysis;C:chloroplast;OBMPF O.I. C.G. H.G.
9.1 99.1 64.3 At1g30260 839906 - F:molecular_function unknown;P:response to cytokinin stimulus;C:unknown;P O.I. C.G. H.G.
9.1 99.1 39.4 At2g46030 819211 UBC6 (ubiquitin-conjugating enzyme 6) Ubiquitin conjugating enzyme E2 O.I. C.G. H.G.
9.0 99.1 20.4 At1g09480 837471 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase O.I. C.G. H.G.
8.9 99.0 121.2 At1g78680 844204 ATGGH2 (gamma-glutamyl hydrolase 2) The Arabidopsis protein AtGGH2 is a gamma-glutamyl hydrolase acting specifically on monoglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole. O.I. C.G. H.G.
8.9 99.0 72.5 At1g07440 837256 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
8.9 99.0 16.4 At4g22830 828382 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOP O.I. C.G. H.G.
8.8 99.0 125.5 At3g50830 824247 COR413-PM2 (COLD-REGULATED 413-PLASMA MEMBRANE 2) cold acclimation protein WCOR413-like protein beta form. Transcript is not detectable. O.I. C.G. H.G.
8.8 99.0 34.9 At4g31560 829283 HCF153 Encodes HCF153, a 15-KDa protein involved in the biogenesis of the cytochrome b(6)f complex. Associated with the thylakoid membrane. O.I. C.G. H.G.
8.8 99.0 25.2 At4g09350 826517 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV O.I. C.G. H.G.
8.8 99.0 22.2 At3g56080 824774 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PBOMF O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
46.4	99.8	33.2	At2g40435	818637	-	F:unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
34.0	99.7	107.1	At3g29575	822619	AFP3 (ABI FIVE BINDING PROTEIN 3)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
31.5	99.7	69.7	At3g26960	822314	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
25.6	99.7	227.0	At3g11410	820314	PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA)	Encodes protein phosphatase 2C. Negative regulator of ABA signalling. Expressed in seeds during germination. mRNA up-regulated by drought and ABA.	O.I.	C.G.	H.G.
24.1	99.6	12.8	At5g62040	836324	brother of FT and TFL1 protein (BFT)	F:phosphatidylethanolamine binding;P:biological_process unknown;C:cellular_component unknown;PMFOVB	O.I.	C.G.	H.G.
23.8	99.6	95.3	At1g60190	842314	armadillo/beta-catenin repeat family protein / U-box domain-containing protein	F:ubiquitin-protein ligase activity, protein binding, binding, zinc ion binding;P:protein ubiquitination;C:ubiquitin ligase complex;PMOFBVA	O.I.	C.G.	H.G.
22.1	99.6	103.9	At5g65840	836713	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;PMBOF	O.I.	C.G.	H.G.
21.3	99.6	102.9	At5g59220	836040	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:response to water deprivation, response to abscisic acid stimulus;C:chloroplast;MPOFBV	O.I.	C.G.	H.G.
21.0	99.6	35.3	At5g10930	830960	CIPK5 (CBL-INTERACTING PROTEIN KINASE 5)	Encodes CBL-interacting protein kinase 5 (CIPK5).	O.I.	C.G.	H.G.
20.0	99.6	60.5	At1g69260	843257	AFP1 (ABI FIVE BINDING PROTEIN)	F:unknown;P:abscisic acid mediated signaling;C:nucleus;POMF	O.I.	C.G.	H.G.
19.9	99.6	108.0	At1g53560	841791	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
19.9	99.6	82.1	At1g02816	839308	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;PO	O.I.	C.G.	H.G.
19.8	99.6	137.6	At2g46100	819218	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO	O.I.	C.G.	H.G.
19.6	99.6	21.1	At5g53710	835452	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
19.4	99.6	59.8	At3g44735	823603	PSK1	Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor.	O.I.	C.G.	H.G.
19.4	99.6	57.2	At2g23840	816916	HNH endonuclease domain-containing protein	F:endonuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OBVPA	O.I.	C.G.	H.G.
19.1	99.6	44.6	At3g55500	824715	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	O.I.	C.G.	H.G.
19.0	99.5	228.5	At2g33380	817901	RD20 (RESPONSIVE TO DESSICATION 20)	Encodes a calcium binding protein whose mRNA is induced upon treatment with NaCl, ABA and in response to dessication. mRNA expression under drought conditions is apparent particularly in leaves and flowers.	O.I.	C.G.	H.G.
18.7	99.5	189.2	At2g21970	816733	SEP2 (STRESS ENHANCED PROTEIN 2)	stress enhanced protein 2 (SEP2) chlorophyll a/b-binding protein	O.I.	C.G.	H.G.
18.3	99.5	50.8	At1g21790	838783	-	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MPO	O.I.	C.G.	H.G.
18.1	99.5	185.5	At5g57040	835808	lactoylglutathione lyase family protein / glyoxalase I family protein	F:catalytic activity;P:metabolic process;C:chloroplast;BPOM	O.I.	C.G.	H.G.
18.0	99.5	87.6	At2g21185	816654	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
18.0	99.5	52.4	At1g66890	843007	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
17.9	99.5	112.6	At3g28270	822453	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMPOAFV	O.I.	C.G.	H.G.
17.7	99.5	18.5	At4g13800	827014	permease-related	F:unknown;P:biological_process unknown;C:plasma membrane;MFPOB	O.I.	C.G.	H.G.
17.1	99.5	69.0	At5g58650	835979	PSY1 (plant peptide containing sulfated tyrosine 1)	Encodes PSY1, an18-aa tyrosine-sulfated glycopeptide that promotes cellular proliferation and expansion. PSY1 is widely expressed in various tissues, including shoot apical meristem, and is highly up-regulated by wounding. Perception of PSY1 depends on At1g72300, a leucine-rich repeat receptor kinase (LRR-RK).	O.I.	C.G.	H.G.
16.8	99.5	68.6	At5g01520	831747	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPVF	O.I.	C.G.	H.G.
16.7	99.5	60.6	At2g16630	816164	proline-rich family protein	F:unknown;P:unknown;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
16.5	99.5	49.6	At5g03230	831900	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
16.3	99.5	164.1	At1g29395	839815	COR414-TM1	encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.	O.I.	C.G.	H.G.
15.2	99.4	24.6	At3g13672	820573	seven in absentia (SINA) family protein	F:molecular_function unknown;P:multicellular organismal development, ubiquitin-dependent protein catabolic process;C:nucleus;MPO	O.I.	C.G.	H.G.
15.1	99.4	131.0	At2g46650	819277	CB5-C (CYTOCHROME B5 ISOFORM C)	member of Cytochromes b5	O.I.	C.G.	H.G.
14.6	99.4	51.1	At2g25625	817103	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
14.4	99.4	17.8	At3g28130	822437	nodulin MtN21 family protein	F:unknown;P:biological_process unknown;C:membrane;PBOMA	O.I.	C.G.	H.G.
14.3	99.4	26.3	At1g31820	840072	amino acid permease family protein	F:cationic amino acid transmembrane transporter activity;P:transport, amino acid transport;C:membrane;BFMOPA	O.I.	C.G.	H.G.
14.0	99.4	133.1	At4g11570	826761	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;BOPMAF	O.I.	C.G.	H.G.
12.9	99.3	152.1	At1g75460	843882	ATP-dependent protease La (LON) domain-containing protein	F:ATP-dependent peptidase activity;P:ATP-dependent proteolysis;C:chloroplast;OBMPF	O.I.	C.G.	H.G.
12.6	99.3	156.2	At1g29390	839814	COR314-TM2	encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Possibly targeted to thylakoid membrane.	O.I.	C.G.	H.G.
12.6	99.3	25.2	At2g45660	819174	AGL20 (AGAMOUS-LIKE 20)	Controls flowering and is required for CO to promote flowering. It acts downstream of FT. Overexpression of (SOC1) AGL20 suppresses not only the late flowering of plants that have functional FRI and FLC alleles but also the delayed phase transitions during the vegetative stages of development. AGL20/SOC1 acts with AGL24 to promote flowering and inflorescence meristem identity.AGL20 upregulates expression of AGL24 in response to GA.	O.I.	C.G.	H.G.
12.5	99.3	60.1	At1g07720	837286	KCS3 (3-KETOACYL-COA SYNTHASE 3)	Encodes KCS3, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
12.4	99.3	106.5	At1g13990	837959	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
12.4	99.3	20.2	At4g02360	827767	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
12.2	99.3	31.9	At5g50100	835074	-	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OBPM	O.I.	C.G.	H.G.
12.2	99.3	27.5	At2g41870	818787	remorin family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
12.0	99.3	408.6	At2g42540	818854	COR15A (COLD-REGULATED 15A)	A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope.	O.I.	C.G.	H.G.
12.0	99.3	156.1	At1g50020	841426	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P	O.I.	C.G.	H.G.
12.0	99.3	92.2	At3g46630	823816	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO	O.I.	C.G.	H.G.
11.9	99.3	114.6	At5g45950	834635	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
11.9	99.3	89.4	At2g41190	818718	amino acid transporter family protein	F:amino acid transmembrane transporter activity;P:amino acid transport;C:plasma membrane, membrane;MPOFBAV	O.I.	C.G.	H.G.
11.9	99.3	42.2	At1g47960	841214	C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1)	Plant cell wall (CWI) and vacuolar invertases (VI) play important roles in carbohydrate metabolism, stress responses and sugar signaling.	O.I.	C.G.	H.G.
11.8	99.3	170.7	At5g08410	830739	FTRA2 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2)	F:ferredoxin:thioredoxin reductase activity, lipoate synthase activity, catalytic activity, ferredoxin reductase activity;P:photosynthesis, light reaction, lipoate biosynthetic process, photosynthesis;C:chloroplast;BPO	O.I.	C.G.	H.G.
11.8	99.3	24.5	At5g22390	832300	unknown protein	F:unknown;P:unknown;C:unknown;PMOF	O.I.	C.G.	H.G.
11.7	99.3	102.8	At4g37980	829954	ELI3-1 (ELICITOR-ACTIVATED GENE 3-1)	F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:response to bacterium, plant-type hypersensitive response;C:unknown;BOPFMAV	O.I.	C.G.	H.G.
11.7	99.3	41.0	At1g78995	844240	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
11.7	99.3	23.2	At3g05340	819698	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF	O.I.	C.G.	H.G.
11.6	99.3	118.0	At1g10500	837590	ATCPISCA (chloroplast-localized IscA-like protein)	Involved in chloroplast Fe-S cluster assembly. Located in the chloroplast stroma. Expressed preferentially in green tissues.	O.I.	C.G.	H.G.
11.3	99.3	167.0	At5g43850	834407	ARD4	F:acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding;P:methionine salvage;C:cellular_component unknown;PBMFO	O.I.	C.G.	H.G.
11.3	99.3	57.7	At2g34810	818046	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to jasmonic acid stimulus, response to wounding;C:endomembrane system;FBPOAM	O.I.	C.G.	H.G.
11.2	99.2	33.1	At1g32520	840146	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPO	O.I.	C.G.	H.G.
11.1	99.2	40.7	At5g47330	834780	palmitoyl protein thioesterase family protein	F:palmitoyl-(protein) hydrolase activity;P:response to salt stress;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
10.9	99.2	209.9	At1g66100	842924	thionin, putative	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.	O.I.	C.G.	H.G.
10.9	99.2	123.3	At2g26690	817210	nitrate transporter (NTP2)	F:transporter activity;P:response to jasmonic acid stimulus, response to wounding;C:membrane;BPOMF	O.I.	C.G.	H.G.
10.8	99.2	13.9	At1g24470	839063	short-chain dehydrogenase/reductase (SDR) family protein	Encodes one of the two Arabidopsis homologues to YBR159w encoding a S. cerevisiae beta-ketoacyl reductase (KCR), which catalyzes the first reduction during VLCFA (very long chain fatty acids, >18 carbon) elongation: KCR1 (At1g67730), KCR2 (At1g24470). Complementation of the yeast ybr159Delta mutant demonstrated that the two KCR proteins are divergent and that only AtKCR1 can restore heterologous elongase activity similar to the native yeast KCR gene.	O.I.	C.G.	H.G.
10.7	99.2	117.8	At5g43150	834332	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
10.7	99.2	53.6	At1g36380	840544	unknown protein	F:unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
10.7	99.2	36.8	At2g01870	814718	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P	O.I.	C.G.	H.G.
10.5	99.2	67.5	At3g61890	825362	ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12)	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Loss of function mutant has abnormally shaped leaves and stems.	O.I.	C.G.	H.G.
10.5	99.2	40.9	At4g02130	827438	GATL6	Encodes a protein with putative galacturonosyltransferase activity.	O.I.	C.G.	H.G.
10.5	99.2	29.8	At1g18000	838380	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMBPO	O.I.	C.G.	H.G.
10.4	99.2	148.7	At5g18600	831978	glutaredoxin family protein	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
10.4	99.2	92.6	At3g19800	821517	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.3	99.2	53.5	At4g14020	827038	rapid alkalinization factor (RALF) family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.1	99.2	61.5	At5g47640	834815	NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO	O.I.	C.G.	H.G.
10.1	99.2	13.2	At1g43590	840943	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
10.0	99.2	193.8	At1g53670	841804	MSRB1 (methionine sulfoxide reductase B 1)	F:peptide-methionine-(S)-S-oxide reductase activity;P:response to oxidative stress, N-terminal protein myristoylation;C:chloroplast stroma, chloroplast;OBMPFAV	O.I.	C.G.	H.G.
10.0	99.2	45.1	At5g40500	834048	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
9.9	99.1	10.3	At2g45630	819171	oxidoreductase family protein	F:NAD or NADH binding, binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, catalytic activity;P:metabolic process;C:unknown;BOMAFP	O.I.	C.G.	H.G.
9.8	99.1	38.1	At5g35490	833513	unknown protein	Encodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine.	O.I.	C.G.	H.G.
9.7	99.1	185.3	At4g37800	829936	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBO	O.I.	C.G.	H.G.
9.7	99.1	96.4	At5g37360	833710	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P	O.I.	C.G.	H.G.
9.6	99.1	81.4	At2g24860	817023	chaperone protein dnaJ-related	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;PBMOF	O.I.	C.G.	H.G.
9.5	99.1	36.1	At3g52070	824370	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
9.4	99.1	98.0	At2g04039	814937	unknown protein	F:molecular_function unknown;P:unknown;C:chloroplast;BOP	O.I.	C.G.	H.G.
9.4	99.1	84.9	At1g73480	843683	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOPMFVA	O.I.	C.G.	H.G.
9.3	99.1	138.2	At3g21670	821721	nitrate transporter (NTP3)	F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF	O.I.	C.G.	H.G.
9.3	99.1	57.7	At1g12845	837841	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
9.3	99.1	44.8	At3g06780	819863	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA	O.I.	C.G.	H.G.
9.3	99.1	34.9	At1g56650	842120	PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1)	Encodes a putative MYB domain containing transcription factor involved in anthocyanin metabolism and radical scavenging. Essential for the sucrose-mediated expression of the dihydroflavonol reductase gene.	O.I.	C.G.	H.G.
9.2	99.1	37.8	At4g34480	829599	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO	O.I.	C.G.	H.G.
9.1	99.1	99.8	At1g19740	838563	ATP-dependent protease La (LON) domain-containing protein	F:ATP-dependent peptidase activity;P:ATP-dependent proteolysis;C:chloroplast;OBMPF	O.I.	C.G.	H.G.
9.1	99.1	64.3	At1g30260	839906	-	F:molecular_function unknown;P:response to cytokinin stimulus;C:unknown;P	O.I.	C.G.	H.G.
9.1	99.1	39.4	At2g46030	819211	UBC6 (ubiquitin-conjugating enzyme 6)	Ubiquitin conjugating enzyme E2	O.I.	C.G.	H.G.
9.0	99.1	20.4	At1g09480	837471	cinnamyl-alcohol dehydrogenase family / CAD family	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase	O.I.	C.G.	H.G.
8.9	99.0	121.2	At1g78680	844204	ATGGH2 (gamma-glutamyl hydrolase 2)	The Arabidopsis protein AtGGH2 is a gamma-glutamyl hydrolase acting specifically on monoglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole.	O.I.	C.G.	H.G.
8.9	99.0	72.5	At1g07440	837256	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
8.9	99.0	16.4	At4g22830	828382	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOP	O.I.	C.G.	H.G.
8.8	99.0	125.5	At3g50830	824247	COR413-PM2 (COLD-REGULATED 413-PLASMA MEMBRANE 2)	cold acclimation protein WCOR413-like protein beta form. Transcript is not detectable.	O.I.	C.G.	H.G.
8.8	99.0	34.9	At4g31560	829283	HCF153	Encodes HCF153, a 15-KDa protein involved in the biogenesis of the cytochrome b(6)f complex. Associated with the thylakoid membrane.	O.I.	C.G.	H.G.
8.8	99.0	25.2	At4g09350	826517	DNAJ heat shock N-terminal domain-containing protein	F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV	O.I.	C.G.	H.G.
8.8	99.0	22.2	At3g56080	824774	dehydration-responsive protein-related	F:unknown;P:biological_process unknown;C:cellular_component unknown;PBOMF	O.I.	C.G.	H.G.

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GSM ID	GSM170897
Assay name	Col-0 +ABA repl1
GSE experiment	GSE7112: Abscisic acid effect on wild type and the abh1 mutant

Microarray experiments to specifically-expressed genes

GSM ID GSM170897 Assay name Col-0 +ABA repl1 GSE experiment GSE7112: Abscisic acid effect on wild type and the abh1 mutant

GSM ID GSM170897

Assay name Col-0 +ABA repl1

GSE experiment GSE7112: Abscisic acid effect on wild type and the abh1 mutant