Microarray experiments to specifically-expressed genes

GSM ID GSM159272
Assay name Rice coleoptiles, 4 days old, anoxic, REPLICATE 2 (Sample #12)
GSE experiment GSE6908: Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional descriptionEvAGI codeArabidopsis gene name O.I. C.G. H.G. Other DB
253.2100.0250.5Os10g0551900AK102086.1-Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein2e+0At2g30860ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)O.I.C.G.H.G.
170.5100.02.4Os02g0288100AK107019.1-Pectinesterase6e-8At2g45220pectinesterase family proteinO.I.C.G.H.G.
165.6100.042.3Os03g0368300AK073767.1--3e-3At2g24800peroxidase, putativeO.I.C.G.H.G.
164.2100.044.6Os01g0342900AK063921.1-Adenosine monophosphate binding protein 1 AMPBP13e-4At2g30560glycine-rich proteinO.I.C.G.H.G.
157.1100.08.7Os04g0612700AK102452.1-Mannitol dehydrogenase (EC 1.1.1.255)(NAD-dependent mannitol dehydrogenase) (Fragment)2e-1At2g21730CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2)O.I.C.G.H.G.
137.8100.058.9Os11g0701800AB027417.1-Class III chitinase homologue (OsChib3H-a)3e+0At1g78340ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)O.I.C.G.H.G.
127.9100.08.6Os02g0808800AK064401.1-Cinnamoyl CoA reductase (EC 1.2.1.44)2e-1At2g28500LBD11 (LOB DOMAIN-CONTAINING PROTEIN 11)O.I.C.G.H.G.
124.0100.0186.5Os02g0587000AK062460.1-Glycine-rich protein6e+0At1g30515unknown proteinO.I.C.G.H.G.
113.6100.012.6Os02g0811800AK119257.1-Conserved hypothetical protein5e-2At5g58490cinnamoyl-CoA reductase familyO.I.C.G.H.G.
108.2100.02.7Os11g0701900AK064281.1-Glycoside hydrolase, family 18 protein9e+0At4g17240unknown proteinO.I.C.G.H.G.
102.7100.026.0Os11g0701400D55710.1-Chitinase (EC 3.2.1.14)9e+0At5g60840unknown proteinO.I.C.G.H.G.
97.7100.031.0Os08g0136800AK063306.1-Protein of unknown function DUF26 domaincontaining protein1e+1At4g24805methyltransferaseO.I.C.G.H.G.
95.8100.075.5Os09g0483500AK121473.1-Calcium-binding EF-hand domain containing protein2e+0At5g49100unknown proteinO.I.C.G.H.G.
87.8100.010.3Os08g0136500AK061187.1-Protein of unknown function DUF26 domaincontaining protein1e-1At1g08320bZIP family transcription factorO.I.C.G.H.G.
87.1100.013.8Os04g0551600AK064637.1-FYVE/PHD zinc finger domain containing protein2e-5At1g02070unknown proteinO.I.C.G.H.G.
85.4100.02.6Os11g0701000AB027424.1-Class III chitinase homologue (OsChib3H-c)2e-1At4g20470unknown proteinO.I.C.G.H.G.
84.5100.02.6Os02g0484200AK103832.1-Transferase family protein1e+1At5g18180Gar1 RNA-binding region family proteinO.I.C.G.H.G.
80.999.940.6Os08g0136700AF093570.1-Protein of unknown function DUF26 domaincontaining protein3e+0At3g20690F-box protein-relatedO.I.C.G.H.G.
80.999.920.0Os09g0483100AK107051.1--5e+0At4g27745-O.I.C.G.H.G.
80.699.9135.5Os01g0348800AK062553.1-Salt-stress induced protein (Salt protein)1e+0At5g58570unknown proteinO.I.C.G.H.G.
78.199.91.5Os05g0403300AK122177.1-Peptidase aspartic family protein1e+1At5g23100unknown proteinO.I.C.G.H.G.
76.399.92.0Os02g0583900AK070354.1-Conserved hypothetical protein6e+0Atcg00330-O.I.C.G.H.G.
74.199.911.0Os10g0451700AK103350.1-Glycine-rich cell wall structural protein 2precursor3e-2At1g62240unknown proteinO.I.C.G.H.G.
72.899.925.4Os05g0187100AK067988.1-Hexokinase1e-2At2g19860HXK2 (HEXOKINASE 2)O.I.C.G.H.G.
69.899.94.3Os03g0856700BI806124-Ga20 oxidase (Fragment)3e+0At2g30430unknown proteinO.I.C.G.H.G.
64.999.91.9Os03g0351700AK108549.1-Hypothetical protein6e+0At3g62650unknown proteinO.I.C.G.H.G.
64.299.962.9Os04g0316200AY576676.1-Protein of unknown function DUF26 domaincontaining protein3e+0At1g50390fructokinase-relatedO.I.C.G.H.G.
64.099.9117.6Os08g0136300AK059618.1-Protein of unknown function DUF26 domaincontaining protein1e-1At4g24026unknown proteinO.I.C.G.H.G.
62.199.919.6Os11g0490600AK067664.1-Hypothetical protein8e-1At3g20680unknown proteinO.I.C.G.H.G.
61.399.92.9Os03g0788700AK073842.1-Beta-Ig-H3/fasciclin domain containing protein6e-2At3g11700FLA18 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 18 PRECURSOR)O.I.C.G.H.G.
60.699.90.5Os02g0215200AF513383.1-Histone deacetylase (Fragment)8e-29At4g38130HD1 (HISTONE DEACETYLASE 1)O.I.C.G.H.G.
60.399.951.6Os07g0674800AY297447.1-AP2 domain containing protein RAP2.2 (Fragment)8e-3At4g17500ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)O.I.C.G.H.G.
58.299.93.0Os05g0104700AK108676.1-Leucine-rich repeat, plant specific containingprotein3e+0At1g12630DNA binding / transcription activator/ transcription factorO.I.C.G.H.G.
54.099.90.9Os02g0211100AK063336.1--1e+0At3g17152enzyme inhibitor/ pectinesteraseO.I.C.G.H.G.
53.099.911.8Os05g0554000AK073902.1-Multi antimicrobial extrusion protein MatE familyprotein8e-2At1g64820MATE efflux family proteinO.I.C.G.H.G.
51.299.93.0Os11g0701600AU108098-Conserved hypothetical protein7e-1At3g11090LBD21 (LOB DOMAIN-CONTAINING PROTEIN 21)O.I.C.G.H.G.
49.799.9124.9Os03g0676300AK108103.1-P-type trefoil domain containing protein7e+0At3g28210PMZO.I.C.G.H.G.
48.899.91.8Os09g0284400AK110658.1-GrpE protein family protein3e-6At4g26780AR192O.I.C.G.H.G.
45.999.92.0Os02g0511600AK111241.1-Conserved hypothetical protein6e+0At1g76930ATEXT4 (EXTENSIN 4)O.I.C.G.H.G.
45.299.95.3Os11g0701200D55708.1-Glycoside hydrolase, family 18 protein6e-1At4g36910LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)O.I.C.G.H.G.
44.599.951.2Os08g0473900M24287.1--3e+0At4g24640APPB1O.I.C.G.H.G.
43.899.9171.7Os11g0211800AK059202.1-Hypothetical protein4e-1At1g62510protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.C.G.H.G.
42.999.9110.5Os08g0518900D55709.1-Glycoside hydrolase, family 18 protein2e-1At5g03830-O.I.C.G.H.G.
41.999.91.3Os09g0521100AK108633.1-Hypothetical protein3e-3At3g10280KCS14 (3-KETOACYL-COA SYNTHASE 14)O.I.C.G.H.G.
41.499.90.1Os11g0603000AK111303.1-Basic helix-loop-helix dimerisation region bHLHdomain containing protein4e+0At4g12880plastocyanin-like domain-containing proteinO.I.C.G.H.G.
40.299.911.7Os04g0602500AK058634.1-Pectinacetylesterase precursor9e-1At2g46930pectinacetylesterase, putativeO.I.C.G.H.G.
40.299.96.4Os11g0701100AK064356.1-Class III chitinase homologue (OsChib3H-h)(Fragment)6e-1At1g25054UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylaseO.I.C.G.H.G.
38.599.85.0Os01g0729600AK073549.1-Conserved hypothetical protein1e+0At5g11680unknown proteinO.I.C.G.H.G.
38.199.813.5Os06g0707300AK101481.1-Cyclin-like F-box domain containing protein6e-2At5g47090unknown proteinO.I.C.G.H.G.
36.899.88.0Os04g0249600AK119900.1-Rhodanese-like domain containing protein3e-2At4g18335unknown proteinO.I.C.G.H.G.
36.699.814.3Os01g0312500AK105998.1-Pectin methylesterase isoform alpha (EC 3.1.1.11)(Fragment)2e-2At3g14310ATPME3O.I.C.G.H.G.
35.499.86.7Os03g0336200AY466471.1-BZIP transcription factor RF2b3e-25At1g06850AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52)O.I.C.G.H.G.
34.899.867.4Os03g0182800AY323478.1-Ethylene responsive element binding factor3(OsERF3)5e-2At2g44840ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)O.I.C.G.H.G.
34.499.834.0Os10g0370500AK065000.1-Glycoside hydrolase, family 5 protein2e-2At5g37550unknown proteinO.I.C.G.H.G.
33.299.818.9Os11g0702200AK101155.1-Glycoside hydrolase, family 18 protein2e+0At2g38480integral membrane protein, putativeO.I.C.G.H.G.
31.899.70.5Os07g0531200AK111249.1-Conserved hypothetical protein4e-1At5g28420unknown proteinO.I.C.G.H.G.
30.699.70.9Os09g0439800AK068870.1-Conserved hypothetical protein4e-2At1g17400unknown proteinO.I.C.G.H.G.
30.099.752.3Os01g0194600AK102031.1-Glutaredoxin domain containing protein4e-1At4g21080Dof-type zinc finger domain-containing proteinO.I.C.G.H.G.
30.099.716.0Os04g0460300AK106202.1--9e-1At1g77145unknown proteinO.I.C.G.H.G.
29.899.719.9Os11g0702100AK102505.1-Class III chitinase homologue (OsChib3H-h)(Fragment)6e-1At1g64628CPuORF57 (Conserved peptide upstream open reading frame 57)O.I.C.G.H.G.
29.199.719.3Os09g0462700AK067260.1--1e-21At1g47500ATRBP47C' (RNA-binding protein 47C')O.I.C.G.H.G.
29.099.71.8Os01g0525800AK073683.1-Conserved hypothetical protein3e-1At3g48550-O.I.C.G.H.G.
28.999.690.9Os10g0551800L27209.1-Root-specific protein (RCc2 protein)2e+0At5g17870PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6)O.I.C.G.H.G.
28.999.673.4Os03g0785900AK103358.1-Glutathione S-transferase GST 19 (EC 2.5.1.18)5e-1At5g20440protein bindingO.I.C.G.H.G.
28.999.62.5Os03g0816700AK107781.1-Protein of unknown function DUF567 family protein1e-1At4g23170EP1O.I.C.G.H.G.
28.799.61.3Os09g0535500AK108282.1-Zn-finger, RING domain containing protein7e+0At4g35480RHA3BO.I.C.G.H.G.
28.399.625.0Os03g0272900AK066807.1-DVL82e+0At5g53895unknown proteinO.I.C.G.H.G.
27.199.63.3Os03g0769700AK063727.1-Conserved hypothetical protein1e+0At4g29240leucine-rich repeat family protein / extensin family proteinO.I.C.G.H.G.
27.099.630.0Os04g0228400Y07782.1-Expansin S24e-14At1g20190ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)O.I.C.G.H.G.
26.399.515.9Os02g0667300AK058228.1-Conserved hypothetical protein6e+0At5g47630mtACP3 (mitochondrial acyl carrier protein 3)O.I.C.G.H.G.
25.799.51.1Os06g0232300AK103208.1-Auxin transport protein REH11e-25At1g70940PIN3 (PIN-FORMED 3)O.I.C.G.H.G.
25.699.51.3Os05g0228000AK064229.1-Purine and other phosphorylases, family 1 protein1e-2At4g28940catalyticO.I.C.G.H.G.
25.299.53.6Os03g0162800AK064127.1-Beta-ketoacyl-CoA-synthase3e-3At5g43760KCS20 (3-KETOACYL-COA SYNTHASE 20)O.I.C.G.H.G.
24.899.51.1Os07g0120100AK063034.1--1e+0At5g06470glutaredoxin family proteinO.I.C.G.H.G.
24.899.50.7Os10g0452300AB059239.1-Eggshell protein family protein8e-3At1g54215proline-rich family proteinO.I.C.G.H.G.
24.699.471.2Os06g0125200AK102200.1-Protein of unknown function DUF581 family protein2e+0At5g54460wound-responsive protein-relatedO.I.C.G.H.G.
24.699.46.6Os11g0701500AK058882.1-Class III chitinase homologue (OsChib3H-g)(Fragment)2e+0At3g10525-O.I.C.G.H.G.
24.499.439.2Os03g0341600AK067497.1-Hypothetical protein2e+0At4g36660unknown proteinO.I.C.G.H.G.
23.599.473.5Os02g0230300AK058752.1-En/Spm-like transposon protein (Protodermal factor1)3e+0At3g60010ASK13 (ARABIDOPSIS SKP1-LIKE 13)O.I.C.G.H.G.
23.599.46.7Os02g0483500AK103708.1-Transferase family protein3e+0At3g48600SWIB complex BAF60b domain-containing proteinO.I.C.G.H.G.
23.199.310.8Os02g0646200AK071507.1-Zn-finger, B-box domain containing protein4e-2At2g43140DNA binding / transcription factorO.I.C.G.H.G.
22.999.30.3Os09g0547000AK062728.1-Auxin responsive SAUR protein family protein1e+0At4g33565protein binding / zinc ion bindingO.I.C.G.H.G.
22.899.32.2Os04g0581800AK107739.1-Heavy metal transport/detoxification proteindomain containing protein3e-4At4g27590copper-binding protein-relatedO.I.C.G.H.G.
22.899.31.2Os02g0594700AK111339.1-Conserved hypothetical protein4e-1At3g16870zinc finger (GATA type) family proteinO.I.C.G.H.G.
22.599.33.9Os08g0151000AK106331.1-Myb, DNA-binding domain containing protein5e-8At1g19000myb family transcription factorO.I.C.G.H.G.
22.499.36.9Os05g0194900AK071798.1-Pyrophosphate-fructose-6-phosphate1-phosphotransferase-like protein(Pyrophosphate-dependent phosphofructo-1-kinase-likeprotein)2e-13At4g26270PFK3 (PHOSPHOFRUCTOKINASE 3)O.I.C.G.H.G.
22.299.33.5Os09g0243200AK107718.1-Zn-finger, RING domain containing protein3e-1At5g64430octicosapeptide/Phox/Bem1p (PB1) domain-containing proteinO.I.C.G.H.G.
22.199.31.3Os03g0312300AK111364.1-Protein of unknown function DUF26 domaincontaining protein8e+0At5g61600ethylene-responsive element-binding family proteinO.I.C.G.H.G.
22.099.32.4Os02g0682300BI805402-Zn-finger, RING domain containing protein1e+0At3g44760unknown proteinO.I.C.G.H.G.
22.099.31.1Os02g0579000AB028180.1-No apical meristem (NAM) protein domain containingprotein5e-14At3g04060anac046 (Arabidopsis NAC domain containing protein 46)O.I.C.G.H.G.
21.899.23.7Os01g0185400AK112064.1-Peptidase S9A, prolyl oligopeptidase, N-terminalbeta-propeller domain containing protein6e-2At5g63740zinc finger protein-relatedO.I.C.G.H.G.
21.899.21.3Os10g0513900AK105773.1-E-class P450, group I family protein2e-8At1g64900CYP89A2 (CYTOCHROME P450 89A2)O.I.C.G.H.G.
21.199.20.4Os04g0565200AK111866.1-Cis-zeatin O-glucosyltransferase6e-2At2g43840UDP-glucoronosyl/UDP-glucosyl transferase family proteinO.I.C.G.H.G.
21.199.20.3Os05g0108400AK119954.1-Plant protein of unknown function DUF868 familyprotein6e-1At2g37000TCP family transcription factor, putativeO.I.C.G.H.G.
21.099.235.8Os02g0788800AK060825.1-Amino acid/polyamine transporter II family protein1e-5At2g41190amino acid transporter family proteinO.I.C.G.H.G.
21.099.228.3Os02g0168100AK058890.1-4-hydroxyphenylpyruvate dioxygenase (EC1.13.11.27) (4HPPD) (HPD) (HPPDase)1e-2At1g06570PDS1 (PHYTOENE DESATURATION 1)O.I.C.G.H.G.
20.999.297.0Os06g0643500AK103715.1-ADR11 protein (Fragment)3e+0At1g7406060S ribosomal protein L6 (RPL6B)O.I.C.G.H.G.
20.799.20.7Os05g0244700AK104978.1-Aminotransferase, class IV family protein1e+1At5g38110ASF1B (ANTI- SILENCING FUNCTION 1B)O.I.C.G.H.G.
20.699.118.8Os06g0172800CB657586-Seed imbibition protein (Fragment)3e-10At5g20250DIN10 (DARK INDUCIBLE 10)O.I.C.G.H.G.
20.699.17.0Os01g0760000CB679144-Dynein 8 kDa light chain, flagellar outer arm9e-8At3g16120dynein light chain, putativeO.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage