Microarray experiments to specifically-expressed genes

GSM ID GSM159271
Assay name Rice coleoptiles, 4 days old, anoxic, REPLICATE 1 (Sample #11)
GSE experiment GSE6908: Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional descriptionEvAGI codeArabidopsis gene name O.I. C.G. H.G. Other DB
250.1100.029.3Os08g0136500AK061187.1-Protein of unknown function DUF26 domaincontaining protein1e-1At1g08320bZIP family transcription factorO.I.C.G.H.G.
249.5100.029.4Os11g0701200D55708.1-Glycoside hydrolase, family 18 protein6e-1At4g36910LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)O.I.C.G.H.G.
242.0100.061.4Os11g0701400D55710.1-Chitinase (EC 3.2.1.14)9e+0At5g60840unknown proteinO.I.C.G.H.G.
204.8100.030.4Os10g0451700AK103350.1-Glycine-rich cell wall structural protein 2precursor3e-2At1g62240unknown proteinO.I.C.G.H.G.
191.0100.05.7Os11g0701000AB027424.1-Class III chitinase homologue (OsChib3H-c)2e-1At4g20470unknown proteinO.I.C.G.H.G.
187.8100.065.5Os05g0187100AK067988.1-Hexokinase1e-2At2g19860HXK2 (HEXOKINASE 2)O.I.C.G.H.G.
185.8100.010.3Os04g0612700AK102452.1-Mannitol dehydrogenase (EC 1.1.1.255)(NAD-dependent mannitol dehydrogenase) (Fragment)2e-1At2g21730CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2)O.I.C.G.H.G.
179.3100.045.8Os03g0368300AK073767.1--3e-3At2g24800peroxidase, putativeO.I.C.G.H.G.
174.4100.0172.6Os10g0551900AK102086.1-Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein2e+0At2g30860ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)O.I.C.G.H.G.
170.5100.04.2Os11g0701900AK064281.1-Glycoside hydrolase, family 18 protein9e+0At4g17240unknown proteinO.I.C.G.H.G.
164.1100.03.1Os05g0403300AK122177.1-Peptidase aspartic family protein1e+1At5g23100unknown proteinO.I.C.G.H.G.
159.4100.025.3Os11g0701100AK064356.1-Class III chitinase homologue (OsChib3H-h)(Fragment)6e-1At1g25054UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylaseO.I.C.G.H.G.
153.8100.09.2Os11g0701600AU108098-Conserved hypothetical protein7e-1At3g11090LBD21 (LOB DOMAIN-CONTAINING PROTEIN 21)O.I.C.G.H.G.
149.5100.040.6Os01g0342900AK063921.1-Adenosine monophosphate binding protein 1 AMPBP13e-4At2g30560glycine-rich proteinO.I.C.G.H.G.
137.7100.058.9Os11g0701800AB027417.1-Class III chitinase homologue (OsChib3H-a)3e+0At1g78340ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)O.I.C.G.H.G.
133.8100.011.6Os03g0816700AK107781.1-Protein of unknown function DUF567 family protein1e-1At4g23170EP1O.I.C.G.H.G.
129.7100.020.6Os04g0551600AK064637.1-FYVE/PHD zinc finger domain containing protein2e-5At1g02070unknown proteinO.I.C.G.H.G.
128.6100.064.6Os08g0136700AF093570.1-Protein of unknown function DUF26 domaincontaining protein3e+0At3g20690F-box protein-relatedO.I.C.G.H.G.
122.3100.06.3Os05g0104700AK108676.1-Leucine-rich repeat, plant specific containingprotein3e+0At1g12630DNA binding / transcription activator/ transcription factorO.I.C.G.H.G.
119.7100.0180.1Os02g0587000AK062460.1-Glycine-rich protein6e+0At1g30515unknown proteinO.I.C.G.H.G.
116.3100.031.1Os11g0701500AK058882.1-Class III chitinase homologue (OsChib3H-g)(Fragment)2e+0At3g10525-O.I.C.G.H.G.
101.5100.013.1Os01g0729600AK073549.1-Conserved hypothetical protein1e+0At5g11680unknown proteinO.I.C.G.H.G.
93.5100.01.3Os02g0288100AK107019.1-Pectinesterase6e-8At2g45220pectinesterase family proteinO.I.C.G.H.G.
89.3100.087.5Os04g0316200AY576676.1-Protein of unknown function DUF26 domaincontaining protein3e+0At1g50390fructokinase-relatedO.I.C.G.H.G.
88.4100.087.4Os10g0370500AK065000.1-Glycoside hydrolase, family 5 protein2e-2At5g37550unknown proteinO.I.C.G.H.G.
87.6100.021.7Os09g0483100AK107051.1--5e+0At4g27745-O.I.C.G.H.G.
85.9100.05.0Os03g0312300AK111364.1-Protein of unknown function DUF26 domaincontaining protein8e+0At5g61600ethylene-responsive element-binding family proteinO.I.C.G.H.G.
84.0100.0154.4Os08g0136300AK059618.1-Protein of unknown function DUF26 domaincontaining protein1e-1At4g24026unknown proteinO.I.C.G.H.G.
81.899.90.9Os03g0445300NM_195895.1--2e-1At4g13940MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)O.I.C.G.H.G.
77.099.988.7Os08g0473900M24287.1--3e+0At4g24640APPB1O.I.C.G.H.G.
76.599.93.3Os12g0583700AY219847.1-Zn-finger, C2H2 type domain containing protein6e-4At5g04340ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6)O.I.C.G.H.G.
75.899.916.9Os05g0554000AK073902.1-Multi antimicrobial extrusion protein MatE familyprotein8e-2At1g64820MATE efflux family proteinO.I.C.G.H.G.
73.699.958.0Os09g0483500AK121473.1-Calcium-binding EF-hand domain containing protein2e+0At5g49100unknown proteinO.I.C.G.H.G.
70.899.922.4Os08g0136800AK063306.1-Protein of unknown function DUF26 domaincontaining protein1e+1At4g24805methyltransferaseO.I.C.G.H.G.
70.599.97.8Os02g0811800AK119257.1-Conserved hypothetical protein5e-2At5g58490cinnamoyl-CoA reductase familyO.I.C.G.H.G.
70.299.93.5Os05g0228000AK064229.1-Purine and other phosphorylases, family 1 protein1e-2At4g28940catalyticO.I.C.G.H.G.
68.999.911.5Os02g0783700AK120371.1-Lysine-ketoglutarate reductase/saccharopinedehydrogenase bifunctional enzyme1e-10At4g33150lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymeO.I.C.G.H.G.
68.899.94.6Os02g0808800AK064401.1-Cinnamoyl CoA reductase (EC 1.2.1.44)2e-1At2g28500LBD11 (LOB DOMAIN-CONTAINING PROTEIN 11)O.I.C.G.H.G.
67.299.93.5Os02g0579000AB028180.1-No apical meristem (NAM) protein domain containingprotein5e-14At3g04060anac046 (Arabidopsis NAC domain containing protein 46)O.I.C.G.H.G.
63.399.942.2Os11g0702100AK102505.1-Class III chitinase homologue (OsChib3H-h)(Fragment)6e-1At1g64628CPuORF57 (Conserved peptide upstream open reading frame 57)O.I.C.G.H.G.
62.699.910.7Os01g0185400AK112064.1-Peptidase S9A, prolyl oligopeptidase, N-terminalbeta-propeller domain containing protein6e-2At5g63740zinc finger protein-relatedO.I.C.G.H.G.
61.799.92.9Os07g0120100AK063034.1--1e+0At5g06470glutaredoxin family proteinO.I.C.G.H.G.
61.699.90.5Os02g0215200AF513383.1-Histone deacetylase (Fragment)8e-29At4g38130HD1 (HISTONE DEACETYLASE 1)O.I.C.G.H.G.
61.199.952.3Os07g0674800AY297447.1-AP2 domain containing protein RAP2.2 (Fragment)8e-3At4g17500ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)O.I.C.G.H.G.
60.599.91.8Os03g0351700AK108549.1-Hypothetical protein6e+0At3g62650unknown proteinO.I.C.G.H.G.
59.899.90.1Os09g0295200AK073072.1-Hypothetical protein6e+0Atcg01090-O.I.C.G.H.G.
58.299.919.0Os01g0816100AB028183.1-NAC-domain containing protein 2 (ANAC002)2e-7At5g63790ANAC102 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 102)O.I.C.G.H.G.
55.999.914.0Os10g0450800AK070851.1-Glycine-rich cell wall structural protein 2precursor1e-3At2g05540glycine-rich proteinO.I.C.G.H.G.
55.999.98.7Os09g0243200AK107718.1-Zn-finger, RING domain containing protein3e-1At5g64430octicosapeptide/Phox/Bem1p (PB1) domain-containing proteinO.I.C.G.H.G.
55.399.917.5Os11g0490600AK067664.1-Hypothetical protein8e-1At3g20680unknown proteinO.I.C.G.H.G.
55.199.90.9Os02g0211100AK063336.1--1e+0At3g17152enzyme inhibitor/ pectinesteraseO.I.C.G.H.G.
54.399.930.9Os11g0702200AK101155.1-Glycoside hydrolase, family 18 protein2e+0At2g38480integral membrane protein, putativeO.I.C.G.H.G.
53.699.9134.7Os03g0676300AK108103.1-P-type trefoil domain containing protein7e+0At3g28210PMZO.I.C.G.H.G.
52.999.948.4Os06g0172800CB657586-Seed imbibition protein (Fragment)3e-10At5g20250DIN10 (DARK INDUCIBLE 10)O.I.C.G.H.G.
51.899.93.2Os03g0856700BI806124-Ga20 oxidase (Fragment)3e+0At2g30430unknown proteinO.I.C.G.H.G.
51.499.918.3Os06g0707300AK101481.1-Cyclin-like F-box domain containing protein6e-2At5g47090unknown proteinO.I.C.G.H.G.
50.899.923.0Os12g0242100AK109396.2-Eggshell protein family protein1e-4At1g02405proline-rich family proteinO.I.C.G.H.G.
48.799.94.9Os09g0417800AK067834.1-DNA-binding WRKY domain containing protein1e-1At2g25000WRKY60O.I.C.G.H.G.
48.699.91.5Os02g0484200AK103832.1-Transferase family protein1e+1At5g18180Gar1 RNA-binding region family proteinO.I.C.G.H.G.
48.599.99.6Os01g0654100AK069482.1-CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase)(CTP synthetase)4e-56At3g12670emb2742 (embryo defective 2742)O.I.C.G.H.G.
47.899.92.3Os03g0788700AK073842.1-Beta-Ig-H3/fasciclin domain containing protein6e-2At3g11700FLA18 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 18 PRECURSOR)O.I.C.G.H.G.
47.499.91.3Os02g0583900AK070354.1-Conserved hypothetical protein6e+0Atcg00330-O.I.C.G.H.G.
44.099.90.1Os11g0603000AK111303.1-Basic helix-loop-helix dimerisation region bHLHdomain containing protein4e+0At4g12880plastocyanin-like domain-containing proteinO.I.C.G.H.G.
43.799.9112.3Os08g0518900D55709.1-Glycoside hydrolase, family 18 protein2e-1At5g03830-O.I.C.G.H.G.
42.399.914.5Os01g0760000CB679144-Dynein 8 kDa light chain, flagellar outer arm9e-8At3g16120dynein light chain, putativeO.I.C.G.H.G.
42.399.90.7Os02g0208300AK073104.1-PDR5-like ABC transporter2e-15At2g36380PDR6O.I.C.G.H.G.
41.799.97.9Os03g0336200AY466471.1-BZIP transcription factor RF2b3e-25At1g06850AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52)O.I.C.G.H.G.
40.899.968.6Os01g0348800AK062553.1-Salt-stress induced protein (Salt protein)1e+0At5g58570unknown proteinO.I.C.G.H.G.
40.699.91.1Os10g0452300AB059239.1-Eggshell protein family protein8e-3At1g54215proline-rich family proteinO.I.C.G.H.G.
40.599.99.9Os07g0582800AK069022.1-Conserved hypothetical protein3e+0At1g28700unknown proteinO.I.C.G.H.G.
39.799.91.1Os12g0113600AK107809.1-Hypothetical protein1e-1At5g42965nucleic acid binding / ribonuclease HO.I.C.G.H.G.
39.799.90.5Os11g05360009639.m03008-Hypothetical protein4e-1At4g32030unknown proteinO.I.C.G.H.G.
39.199.9153.2Os11g0211800AK059202.1-Hypothetical protein4e-1At1g62510protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.C.G.H.G.
38.899.84.8Os03g0769700AK063727.1-Conserved hypothetical protein1e+0At4g29240leucine-rich repeat family protein / extensin family proteinO.I.C.G.H.G.
38.699.81.3Os05g0244700AK104978.1-Aminotransferase, class IV family protein1e+1At5g38110ASF1B (ANTI- SILENCING FUNCTION 1B)O.I.C.G.H.G.
38.399.81.0Os01g09287009629.m06954-Aminotransferase, class I and II domain containingprotein4e-18At5g23670LCB2O.I.C.G.H.G.
38.199.851.3Os02g0168100AK058890.1-4-hydroxyphenylpyruvate dioxygenase (EC1.13.11.27) (4HPPD) (HPD) (HPPDase)1e-2At1g06570PDS1 (PHYTOENE DESATURATION 1)O.I.C.G.H.G.
37.999.82.2Os10g0513900AK105773.1-E-class P450, group I family protein2e-8At1g64900CYP89A2 (CYTOCHROME P450 89A2)O.I.C.G.H.G.
36.599.80.3Os07g0501100AK110924.1-Chalcone synthase (EC 2.3.1.74)(Naregenin-chalcone synthase)2e-1At2g14247Expressed proteinO.I.C.G.H.G.
35.499.80.4Os05g0108400AK119954.1-Plant protein of unknown function DUF868 familyprotein6e-1At2g37000TCP family transcription factor, putativeO.I.C.G.H.G.
33.399.81.2Os09g0284400AK110658.1-GrpE protein family protein3e-6At4g26780AR192O.I.C.G.H.G.
32.599.84.1Os02g0119200AK070181.1-Adenosine monophosphate binding protein 1 AMPBP11e-3At1g66120acyl-activating enzyme 11 (AAE11)O.I.C.G.H.G.
32.299.762.4Os03g0182800AY323478.1-Ethylene responsive element binding factor3(OsERF3)5e-2At2g44840ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)O.I.C.G.H.G.
31.799.79.8Os05g0194900AK071798.1-Pyrophosphate-fructose-6-phosphate1-phosphotransferase-like protein(Pyrophosphate-dependent phosphofructo-1-kinase-likeprotein)2e-13At4g26270PFK3 (PHOSPHOFRUCTOKINASE 3)O.I.C.G.H.G.
31.299.70.0Os11g05646009639.m03227--7e+0At5g61890AP2 domain-containing transcription factor family proteinO.I.C.G.H.G.
30.999.74.5Os03g0162800AK064127.1-Beta-ketoacyl-CoA-synthase3e-3At5g43760KCS20 (3-KETOACYL-COA SYNTHASE 20)O.I.C.G.H.G.
30.899.749.3Os03g0341600AK067497.1-Hypothetical protein2e+0At4g36660unknown proteinO.I.C.G.H.G.
30.699.724.1Os10g0456800AK104810.1-CHY zinc finger domain containing protein1e-2At5g25560zinc finger (C3HC4-type RING finger) family proteinO.I.C.G.H.G.
30.399.752.8Os01g0194600AK102031.1-Glutaredoxin domain containing protein4e-1At4g21080Dof-type zinc finger domain-containing proteinO.I.C.G.H.G.
30.099.762.6Os11g0605500CB680661-Acyl-CoA oxidase2e-20At5g65110ACX2 (ACYL-COA OXIDASE 2)O.I.C.G.H.G.
30.099.70.7Os02g0168200AK108211.1-Transfactor-like protein1e-1At4g05070unknown proteinO.I.C.G.H.G.
29.999.71.3Os03g0700200AK119711.1-Somatomedin B domain containing protein4e+0At1g20340DRT112O.I.C.G.H.G.
29.599.750.3Os02g0788800AK060825.1-Amino acid/polyamine transporter II family protein1e-5At2g41190amino acid transporter family proteinO.I.C.G.H.G.
29.599.79.9Os06g0666800AK107710.1-Conserved hypothetical protein1e+0At3g44440unknown proteinO.I.C.G.H.G.
29.599.74.4Os07g0548800AK120534.1-Protein of unknown function DUF538 family protein8e-1At5g03660unknown proteinO.I.C.G.H.G.
29.199.74.5Os02g0530300AK063708.1-Zn-finger, A20-like domain containing protein2e-2At4g22820zinc finger (AN1-like) family proteinO.I.C.G.H.G.
28.999.62.2Os05g0198400AY275180.1-Zinc transporter 4, chloroplast precursor(ZRT/IRT-like protein 4)2e-1At1g10970ZIP4 (ZINC TRANSPORTER 4 PRECURSOR)O.I.C.G.H.G.
28.999.60.7Os02g07382009630.m04944-U box domain containing protein8e-1At3g01790ribosomal protein L13 family proteinO.I.C.G.H.G.
28.899.615.4Os04g0460300AK106202.1--9e-1At1g77145unknown proteinO.I.C.G.H.G.
28.899.61.2Os02g0511600AK111241.1-Conserved hypothetical protein6e+0At1g76930ATEXT4 (EXTENSIN 4)O.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage