CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM159267

Assay name Salt stress, biological rep 3

GSE experiment GSE6901: Expression data for stress treatment in rice seedlings

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description Ev AGI code Arabidopsis gene name O.I. C.G. H.G. Other DB
44.9 99.9 11.6 Os04g0691900 AK068257.1 - Phosphatidylinositol-4-phosphate 5-kinase familyprotein 1e-5 At1g34260 phosphatidylinositol-4-phosphate 5-kinase family protein O.I. C.G. H.G.
44.7 99.9 1.5 Os08g0442900 AK110520.1 - Conserved hypothetical protein 5e-1 At2g24060 translation initiation factor 3 (IF-3) family protein O.I. C.G. H.G.
37.6 99.8 5.4 Os05g0550600 AK119689.1 - Nonspecific lipid transfer protein 1e+0 At2g43261 unknown protein O.I. C.G. H.G.
35.7 99.8 0.6 Os04g0110100 AK062396.1 - Concanavalin A-like lectin/glucanase domaincontaining protein 2e+0 At1g02210 regulator of shoot apical meristem-related O.I. C.G. H.G.
33.6 99.8 0.2 Os02g0191600 9630.m00899 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 1e-1 At2g04038 AtbZIP48 (Arabidopsis thaliana basic leucine-zipper 48) O.I. C.G. H.G.
33.2 99.8 16.5 Os06g0681200 AK107980.1 - Plastocyanin-like domain containing protein 1e-1 At3g49430 SRp34a (Ser/Arg-rich protein 34a) O.I. C.G. H.G.
27.3 99.6 5.2 Os02g0824500 AK111296.1 - - 2e-3 At3g48940 remorin family protein O.I. C.G. H.G.
26.2 99.5 204.2 Os07g0209100 AK120944.1 - Raffinose synthase family protein 6e-6 At3g57520 AtSIP2 (Arabidopsis thaliana seed imbibition 2) O.I. C.G. H.G.
25.6 99.5 38.4 Os01g0214500 AK062484.1 - Conserved hypothetical protein 1e+0 At4g21620 glycine-rich protein O.I. C.G. H.G.
24.6 99.4 3.5 Os01g0192300 AK062458.1 - I-box binding factor (Fragment) 6e-2 At3g16350 myb family transcription factor O.I. C.G. H.G.
24.6 99.4 1.9 Os02g0592800 AK107707.1 - Protein of unknown function DUF581 family protein 1e+0 At5g49120 senescence-associated protein-related O.I. C.G. H.G.
24.5 99.4 10.0 Os02g0513100 AK103266.1 - NEC1 1e-5 At4g25010 nodulin MtN3 family protein O.I. C.G. H.G.
24.5 99.4 5.3 Os10g0492900 BI812940 - Alpha-galactosidase precursor (EC 3.2.1.22)(Melibiase) (Alpha-D- galactoside galactohydrolase) 6e-20 At5g08380 AtAGAL1 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 1) O.I. C.G. H.G.
24.3 99.4 25.7 Os12g0147200 AK063680.1 - Hypothetical protein 4e-1 At4g30010 unknown protein O.I. C.G. H.G.
24.2 99.4 0.9 Os01g0794400 AK122041.1 - Thioredoxin domain 2 containing protein 3e+0 At5g35100 peptidyl-prolyl cis-trans isomerase O.I. C.G. H.G.
23.0 99.3 42.9 Os02g0736400 AK065229.1 - Dihydroorotate dehydrogenase family protein 4e-24 At3g17810 dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein O.I. C.G. H.G.
23.0 99.3 30.6 Os06g0140900 AK058823.1 - Hypothetical protein 1e-1 At5g27440 unknown protein O.I. C.G. H.G.
21.7 99.2 85.9 Os01g0172800 CA765179 - - 1e+0 At1g28395 unknown protein O.I. C.G. H.G.
20.3 99.1 0.2 Os08g0563400 9636.m04584 - Conserved hypothetical protein 8e-2 At2g31310 LBD14 (LOB DOMAIN-CONTAINING PROTEIN 14) O.I. C.G. H.G.
19.0 99.0 16.6 Os06g0356800 9634.m02475 - Class III chitinase homologue (OsChib3H-h)(Fragment) 4e+0 At4g01200 C2 domain-containing protein O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	H.G.
44.9	99.9	11.6	Os04g0691900	AK068257.1	-	Phosphatidylinositol-4-phosphate 5-kinase familyprotein	1e-5	At1g34260	phosphatidylinositol-4-phosphate 5-kinase family protein	O.I.	C.G.	H.G.
44.7	99.9	1.5	Os08g0442900	AK110520.1	-	Conserved hypothetical protein	5e-1	At2g24060	translation initiation factor 3 (IF-3) family protein	O.I.	C.G.	H.G.
37.6	99.8	5.4	Os05g0550600	AK119689.1	-	Nonspecific lipid transfer protein	1e+0	At2g43261	unknown protein	O.I.	C.G.	H.G.
35.7	99.8	0.6	Os04g0110100	AK062396.1	-	Concanavalin A-like lectin/glucanase domaincontaining protein	2e+0	At1g02210	regulator of shoot apical meristem-related	O.I.	C.G.	H.G.
33.6	99.8	0.2	Os02g0191600	9630.m00899	-	Basic-leucine zipper (bZIP) transcription factordomain containing protein	1e-1	At2g04038	AtbZIP48 (Arabidopsis thaliana basic leucine-zipper 48)	O.I.	C.G.	H.G.
33.2	99.8	16.5	Os06g0681200	AK107980.1	-	Plastocyanin-like domain containing protein	1e-1	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	O.I.	C.G.	H.G.
27.3	99.6	5.2	Os02g0824500	AK111296.1	-	-	2e-3	At3g48940	remorin family protein	O.I.	C.G.	H.G.
26.2	99.5	204.2	Os07g0209100	AK120944.1	-	Raffinose synthase family protein	6e-6	At3g57520	AtSIP2 (Arabidopsis thaliana seed imbibition 2)	O.I.	C.G.	H.G.
25.6	99.5	38.4	Os01g0214500	AK062484.1	-	Conserved hypothetical protein	1e+0	At4g21620	glycine-rich protein	O.I.	C.G.	H.G.
24.6	99.4	3.5	Os01g0192300	AK062458.1	-	I-box binding factor (Fragment)	6e-2	At3g16350	myb family transcription factor	O.I.	C.G.	H.G.
24.6	99.4	1.9	Os02g0592800	AK107707.1	-	Protein of unknown function DUF581 family protein	1e+0	At5g49120	senescence-associated protein-related	O.I.	C.G.	H.G.
24.5	99.4	10.0	Os02g0513100	AK103266.1	-	NEC1	1e-5	At4g25010	nodulin MtN3 family protein	O.I.	C.G.	H.G.
24.5	99.4	5.3	Os10g0492900	BI812940	-	Alpha-galactosidase precursor (EC 3.2.1.22)(Melibiase) (Alpha-D- galactoside galactohydrolase)	6e-20	At5g08380	AtAGAL1 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 1)	O.I.	C.G.	H.G.
24.3	99.4	25.7	Os12g0147200	AK063680.1	-	Hypothetical protein	4e-1	At4g30010	unknown protein	O.I.	C.G.	H.G.
24.2	99.4	0.9	Os01g0794400	AK122041.1	-	Thioredoxin domain 2 containing protein	3e+0	At5g35100	peptidyl-prolyl cis-trans isomerase	O.I.	C.G.	H.G.
23.0	99.3	42.9	Os02g0736400	AK065229.1	-	Dihydroorotate dehydrogenase family protein	4e-24	At3g17810	dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein	O.I.	C.G.	H.G.
23.0	99.3	30.6	Os06g0140900	AK058823.1	-	Hypothetical protein	1e-1	At5g27440	unknown protein	O.I.	C.G.	H.G.
21.7	99.2	85.9	Os01g0172800	CA765179	-	-	1e+0	At1g28395	unknown protein	O.I.	C.G.	H.G.
20.3	99.1	0.2	Os08g0563400	9636.m04584	-	Conserved hypothetical protein	8e-2	At2g31310	LBD14 (LOB DOMAIN-CONTAINING PROTEIN 14)	O.I.	C.G.	H.G.
19.0	99.0	16.6	Os06g0356800	9634.m02475	-	Class III chitinase homologue (OsChib3H-h)(Fragment)	4e+0	At4g01200	C2 domain-containing protein	O.I.	C.G.	H.G.

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GSM ID	GSM159267
Assay name	Salt stress, biological rep 3
GSE experiment	GSE6901: Expression data for stress treatment in rice seedlings

Microarray experiments to specifically-expressed genes

GSM ID GSM159267 Assay name Salt stress, biological rep 3 GSE experiment GSE6901: Expression data for stress treatment in rice seedlings

GSM ID GSM159267

Assay name Salt stress, biological rep 3

GSE experiment GSE6901: Expression data for stress treatment in rice seedlings