CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM159188

Assay name SAM, biological rep 3

GSE experiment GSE6893: Expression data for reproductive development in rice

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description Ev AGI code Arabidopsis gene name O.I. C.G. H.G. Other DB
43.9 99.9 30.4 Os03g0733600 AK058575.1 - SSXT family protein 4e-2 At1g01160 SSXT protein-related / transcription co-activator-related O.I. C.G. H.G.
42.1 99.9 12.4 Os08g0509600 AK107191.1 - SBP-domain protein 5 (Fragment) 2e-4 At2g42200 SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9) O.I. C.G. H.G.
39.6 99.9 107.3 Os08g0485000 AK073011.1 - Phi-1 protein 3e-2 At5g64260 EXL2 (EXORDIUM LIKE 2) O.I. C.G. H.G.
37.6 99.8 0.7 Os01g0844200 AK109255.1 - Hypothetical protein 1e+0 At3g10439 unknown protein O.I. C.G. H.G.
37.3 99.8 6.0 Os06g0116200 AK103508.1 - Growth-regulating factor 5 3e-22 At2g36400 AtGRF3 (GROWTH-REGULATING FACTOR 3) O.I. C.G. H.G.
35.9 99.8 46.3 Os02g0719600 AK070415.1 - SAM dependent carboxyl methyltransferase familyprotein 8e-1 At5g01900 WRKY62 O.I. C.G. H.G.
32.1 99.7 48.2 Os06g0256900 AK060686.1 - Endo-beta-1,4-glucanase precursor (EC 3.2.1.4) 9e-26 At1g23210 AtGH9B6 (Arabidopsis thaliana glycosyl hydrolase 9B6) O.I. C.G. H.G.
32.0 99.7 6.6 Os01g0312800 AK106887.1 - Endo-1,4-beta-glucanase precursor (EC 3.2.1.4) 3e-4 At1g02800 ATCEL2 O.I. C.G. H.G.
31.3 99.7 4.4 Os09g0395600 AK122079.1 - Glycoside hydrolase, family 16 domain containingprotein 1e-2 At1g14720 XTR2 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2) O.I. C.G. H.G.
30.0 99.7 9.9 Os12g0638100 AK103026.1 - Receptor-like protein kinase 3e-4 At5g51770 protein kinase family protein O.I. C.G. H.G.
29.5 99.7 0.9 Os02g0172800 AK103838.1 - Zinc-binding protein 8e-4 At4g13160 unknown protein O.I. C.G. H.G.
28.5 99.6 9.6 Os02g0669000 AK059531.1 - Lipolytic enzyme, G-D-S-L family protein 2e-1 At3g18740 60S ribosomal protein L30 (RPL30C) O.I. C.G. H.G.
28.4 99.6 3.0 Os02g0769200 AK106777.1 - Peptidoglycan-binding LysM domain containingprotein 3e-1 At4g28460 unknown protein O.I. C.G. H.G.
28.2 99.6 6.7 Os08g0420600 AK073563.1 - Permease 1 1e-15 At5g62890 permease, putative O.I. C.G. H.G.
27.5 99.6 2.6 Os09g0517600 AK101828.1 - Actin-binding FH2 domain containing protein 2e-5 At5g67470 formin homology 2 domain-containing protein / FH2 domain-containing protein O.I. C.G. H.G.
26.9 99.6 0.4 Os07g0124700 AK109848.1 - ANT (Ovule development protein aintegumenta) 3e-6 At1g72570 DNA binding / transcription factor O.I. C.G. H.G.
26.5 99.5 2.2 Os03g0674700 AK058659.1 - - 1e-9 At4g37740 AtGRF2 (GROWTHREGULATING FACTOR 2) O.I. C.G. H.G.
24.7 99.4 11.0 Os06g0597400 AB081950.1 - - 4e-20 At5g43810 ZLL (ZWILLE) O.I. C.G. H.G.
24.0 99.4 15.3 Os10g0347000 AK073552.1 - Conserved hypothetical protein 2e-1 At1g61900 unknown protein O.I. C.G. H.G.
23.9 99.4 2.2 Os03g0232200 AK106306.1 - BABY BOOM 3e-26 At4g37750 ANT (AINTEGUMENTA) O.I. C.G. H.G.
23.2 99.3 24.0 Os01g0739700 AK063960.1 - Glycoside hydrolase, family 17 protein 1e-6 At4g29360 glycosyl hydrolase family 17 protein O.I. C.G. H.G.
23.1 99.3 16.8 Os06g0217300 AY345223.2 - Transcription factor MADS55 6e-3 At2g22540 SVP (SHORT VEGETATIVE PHASE) O.I. C.G. H.G.
22.5 99.3 0.4 Os02g0652100 AK072906.1 - The start codon is not identified. 4e-1 At2g44745 WRKY family transcription factor O.I. C.G. H.G.
22.0 99.3 8.6 Os01g0914000 AK101364.1 - Conserved hypothetical protein 1e-1 At5g01075 beta-galactosidase O.I. C.G. H.G.
22.0 99.3 4.5 Os10g0328100 NM_195728.1 - Conserved hypothetical protein 2e-1 At2g23310 ATRER1C1 O.I. C.G. H.G.
21.8 99.2 8.7 Os03g0228800 AK121286.1 - Protein kinase domain containing protein 3e-17 At3g49670 BAM2 (BARELY ANY MERISTEM 2) O.I. C.G. H.G.
21.6 99.2 6.8 Os09g0556700 AK112101.1 - Nuclear protein SET domain containing protein 9e-1 At1g52200 unknown protein O.I. C.G. H.G.
21.5 99.2 4.1 Os07g0294001 CA760115 - - 4e+0 At5g14330 unknown protein O.I. C.G. H.G.
21.4 99.2 0.8 Os02g0166800 AK106854.1 - Ribulose bisphosphate carboxylase, large chainfamily protein 3e-10 At5g28490 LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1) O.I. C.G. H.G.
21.0 99.2 9.8 Os09g0466100 AK063940.1 - Cyclin, N-terminal domain containing protein 2e-1 At5g37550 unknown protein O.I. C.G. H.G.
20.8 99.2 1.2 Os02g0816000 9630.m05674 - Anthranilate phosphoribosyltransferase-likeprotein 6e-3 At1g04150 C2 domain-containing protein O.I. C.G. H.G.
20.4 99.1 52.4 Os03g0335500 AK119808.1 - Protein kinase domain containing protein 5e-4 At3g56370 leucine-rich repeat transmembrane protein kinase, putative O.I. C.G. H.G.
19.9 99.1 4.4 Os12g0289600 AK058669.1 - Hypothetical protein 3e+0 At1g12665 - O.I. C.G. H.G.
19.7 99.1 7.8 Os06g0604300 AK119861.1 - Phospholipase D2 2e-12 At3g15730 PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1) O.I. C.G. H.G.
19.5 99.1 1.4 Os05g0180500 9633.m00782 - Hypothetical protein 2e-1 At5g66815 unknown protein O.I. C.G. H.G.
19.3 99.0 2.9 Os11g0551900 AK103055.1 - - 2e-14 At2g22840 AtGRF1 (GROWTH-REGULATING FACTOR 1) O.I. C.G. H.G.
19.3 99.0 0.0 Os05g0205100 AK111332.1 - NLI interacting factor domain containing protein 2e-1 At3g57390 AGL18 O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	H.G.
43.9	99.9	30.4	Os03g0733600	AK058575.1	-	SSXT family protein	4e-2	At1g01160	SSXT protein-related / transcription co-activator-related	O.I.	C.G.	H.G.
42.1	99.9	12.4	Os08g0509600	AK107191.1	-	SBP-domain protein 5 (Fragment)	2e-4	At2g42200	SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9)	O.I.	C.G.	H.G.
39.6	99.9	107.3	Os08g0485000	AK073011.1	-	Phi-1 protein	3e-2	At5g64260	EXL2 (EXORDIUM LIKE 2)	O.I.	C.G.	H.G.
37.6	99.8	0.7	Os01g0844200	AK109255.1	-	Hypothetical protein	1e+0	At3g10439	unknown protein	O.I.	C.G.	H.G.
37.3	99.8	6.0	Os06g0116200	AK103508.1	-	Growth-regulating factor 5	3e-22	At2g36400	AtGRF3 (GROWTH-REGULATING FACTOR 3)	O.I.	C.G.	H.G.
35.9	99.8	46.3	Os02g0719600	AK070415.1	-	SAM dependent carboxyl methyltransferase familyprotein	8e-1	At5g01900	WRKY62	O.I.	C.G.	H.G.
32.1	99.7	48.2	Os06g0256900	AK060686.1	-	Endo-beta-1,4-glucanase precursor (EC 3.2.1.4)	9e-26	At1g23210	AtGH9B6 (Arabidopsis thaliana glycosyl hydrolase 9B6)	O.I.	C.G.	H.G.
32.0	99.7	6.6	Os01g0312800	AK106887.1	-	Endo-1,4-beta-glucanase precursor (EC 3.2.1.4)	3e-4	At1g02800	ATCEL2	O.I.	C.G.	H.G.
31.3	99.7	4.4	Os09g0395600	AK122079.1	-	Glycoside hydrolase, family 16 domain containingprotein	1e-2	At1g14720	XTR2 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2)	O.I.	C.G.	H.G.
30.0	99.7	9.9	Os12g0638100	AK103026.1	-	Receptor-like protein kinase	3e-4	At5g51770	protein kinase family protein	O.I.	C.G.	H.G.
29.5	99.7	0.9	Os02g0172800	AK103838.1	-	Zinc-binding protein	8e-4	At4g13160	unknown protein	O.I.	C.G.	H.G.
28.5	99.6	9.6	Os02g0669000	AK059531.1	-	Lipolytic enzyme, G-D-S-L family protein	2e-1	At3g18740	60S ribosomal protein L30 (RPL30C)	O.I.	C.G.	H.G.
28.4	99.6	3.0	Os02g0769200	AK106777.1	-	Peptidoglycan-binding LysM domain containingprotein	3e-1	At4g28460	unknown protein	O.I.	C.G.	H.G.
28.2	99.6	6.7	Os08g0420600	AK073563.1	-	Permease 1	1e-15	At5g62890	permease, putative	O.I.	C.G.	H.G.
27.5	99.6	2.6	Os09g0517600	AK101828.1	-	Actin-binding FH2 domain containing protein	2e-5	At5g67470	formin homology 2 domain-containing protein / FH2 domain-containing protein	O.I.	C.G.	H.G.
26.9	99.6	0.4	Os07g0124700	AK109848.1	-	ANT (Ovule development protein aintegumenta)	3e-6	At1g72570	DNA binding / transcription factor	O.I.	C.G.	H.G.
26.5	99.5	2.2	Os03g0674700	AK058659.1	-	-	1e-9	At4g37740	AtGRF2 (GROWTHREGULATING FACTOR 2)	O.I.	C.G.	H.G.
24.7	99.4	11.0	Os06g0597400	AB081950.1	-	-	4e-20	At5g43810	ZLL (ZWILLE)	O.I.	C.G.	H.G.
24.0	99.4	15.3	Os10g0347000	AK073552.1	-	Conserved hypothetical protein	2e-1	At1g61900	unknown protein	O.I.	C.G.	H.G.
23.9	99.4	2.2	Os03g0232200	AK106306.1	-	BABY BOOM	3e-26	At4g37750	ANT (AINTEGUMENTA)	O.I.	C.G.	H.G.
23.2	99.3	24.0	Os01g0739700	AK063960.1	-	Glycoside hydrolase, family 17 protein	1e-6	At4g29360	glycosyl hydrolase family 17 protein	O.I.	C.G.	H.G.
23.1	99.3	16.8	Os06g0217300	AY345223.2	-	Transcription factor MADS55	6e-3	At2g22540	SVP (SHORT VEGETATIVE PHASE)	O.I.	C.G.	H.G.
22.5	99.3	0.4	Os02g0652100	AK072906.1	-	The start codon is not identified.	4e-1	At2g44745	WRKY family transcription factor	O.I.	C.G.	H.G.
22.0	99.3	8.6	Os01g0914000	AK101364.1	-	Conserved hypothetical protein	1e-1	At5g01075	beta-galactosidase	O.I.	C.G.	H.G.
22.0	99.3	4.5	Os10g0328100	NM_195728.1	-	Conserved hypothetical protein	2e-1	At2g23310	ATRER1C1	O.I.	C.G.	H.G.
21.8	99.2	8.7	Os03g0228800	AK121286.1	-	Protein kinase domain containing protein	3e-17	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	O.I.	C.G.	H.G.
21.6	99.2	6.8	Os09g0556700	AK112101.1	-	Nuclear protein SET domain containing protein	9e-1	At1g52200	unknown protein	O.I.	C.G.	H.G.
21.5	99.2	4.1	Os07g0294001	CA760115	-	-	4e+0	At5g14330	unknown protein	O.I.	C.G.	H.G.
21.4	99.2	0.8	Os02g0166800	AK106854.1	-	Ribulose bisphosphate carboxylase, large chainfamily protein	3e-10	At5g28490	LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)	O.I.	C.G.	H.G.
21.0	99.2	9.8	Os09g0466100	AK063940.1	-	Cyclin, N-terminal domain containing protein	2e-1	At5g37550	unknown protein	O.I.	C.G.	H.G.
20.8	99.2	1.2	Os02g0816000	9630.m05674	-	Anthranilate phosphoribosyltransferase-likeprotein	6e-3	At1g04150	C2 domain-containing protein	O.I.	C.G.	H.G.
20.4	99.1	52.4	Os03g0335500	AK119808.1	-	Protein kinase domain containing protein	5e-4	At3g56370	leucine-rich repeat transmembrane protein kinase, putative	O.I.	C.G.	H.G.
19.9	99.1	4.4	Os12g0289600	AK058669.1	-	Hypothetical protein	3e+0	At1g12665	-	O.I.	C.G.	H.G.
19.7	99.1	7.8	Os06g0604300	AK119861.1	-	Phospholipase D2	2e-12	At3g15730	PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1)	O.I.	C.G.	H.G.
19.5	99.1	1.4	Os05g0180500	9633.m00782	-	Hypothetical protein	2e-1	At5g66815	unknown protein	O.I.	C.G.	H.G.
19.3	99.0	2.9	Os11g0551900	AK103055.1	-	-	2e-14	At2g22840	AtGRF1 (GROWTH-REGULATING FACTOR 1)	O.I.	C.G.	H.G.
19.3	99.0	0.0	Os05g0205100	AK111332.1	-	NLI interacting factor domain containing protein	2e-1	At3g57390	AGL18	O.I.	C.G.	H.G.

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GSM ID	GSM159188
Assay name	SAM, biological rep 3
GSE experiment	GSE6893: Expression data for reproductive development in rice

Microarray experiments to specifically-expressed genes

GSM ID GSM159188 Assay name SAM, biological rep 3 GSE experiment GSE6893: Expression data for reproductive development in rice

GSM ID GSM159188

Assay name SAM, biological rep 3

GSE experiment GSE6893: Expression data for reproductive development in rice