CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM158701

Assay name HY213-MOCK-REP1

GSE experiment GSE6954: Identification of AGL24 downstream genes by using XVE inducible system

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
76.9 99.9 625.3 At3g47340 823888 ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. O.I. C.G. H.G.
71.0 99.9 134.8 At1g21400 838739 2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
63.6 99.8 266.1 At5g57655 835871 xylose isomerase family protein F:xylose isomerase activity;P:carbohydrate metabolic process;C:endoplasmic reticulum, plasma membrane, vacuole;BOPMF O.I. C.G. H.G.
61.7 99.8 128.8 At1g08630 837385 THA1 (Threonine Aldolase 1) Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings. O.I. C.G. H.G.
54.2 99.8 240.8 At1g10070 837543 ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. O.I. C.G. H.G.
43.4 99.8 315.9 At1g19530 838540 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
41.5 99.8 62.3 At2g43400 818941 ETFQO (electron-transfer flavoprotein:ubiquinone oxidoreductase) Encodes a unique electron-transfer flavoprotein:ubiquinone oxidoreductase that is localized to the mitochondrion. Mutants are more sensitive to sugar starvation when plants are kept in the dark for long periods. O.I. C.G. H.G.
37.3 99.7 261.7 At1g66180 842933 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFOM O.I. C.G. H.G.
36.3 99.7 136.6 At3g13450 820547 DIN4 (DARK INDUCIBLE 4) branched chain alpha-keto acid dehydrogenase E1 beta O.I. C.G. H.G.
35.8 99.7 151.1 At3g45300 823668 IVD (ISOVALERYL-COA-DEHYDROGENASE) Encodes isovaleryl-coenzyme a dehydrogenase. O.I. C.G. H.G.
32.7 99.7 188.1 At1g03090 838362 MCCA MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion. O.I. C.G. H.G.
31.1 99.7 91.7 At1g55810 842031 uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative F:uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding;P:biosynthetic process, metabolic process;C:cellular_component unknown;BOMPFAV O.I. C.G. H.G.
29.8 99.7 50.9 At4g36410 829793 UBC17 (UBIQUITIN-CONJUGATING ENZYME 17) ubiquitin-conjugating enzyme O.I. C.G. H.G.
28.4 99.7 159.1 At2g19800 816499 MIOX2 (MYO-INOSITOL OXYGENASE 2) Encodes a myo-inositol oxygenase family gene. O.I. C.G. H.G.
28.4 99.7 138.2 At5g18170 831935 GDH1 (GLUTAMATE DEHYDROGENASE 1) Encodes the 43 kDa alpha-subunit of the glutamate dehydrogenase with a putative mitochondrial transit polypeptide and NAD(H)- and alpha-ketoglutarate-binding domains. Mitochondrial localization confirmed by subcellular fractionation. Combines in several ratios with GDH2 protein (GDH-beta) to form seven isoenzymes. Catalyzes the cleavage of glycine residues. May be involved in ammonia assimilation under conditions of inorganic nitrogen excess. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells. O.I. C.G. H.G.
28.3 99.7 484.4 At1g62480 842545 vacuolar calcium-binding protein-related F:unknown;P:response to cadmium ion, response to salt stress;C:cellular_component unknown;OMBFPVA O.I. C.G. H.G.
26.7 99.7 150.5 At5g01210 831901 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
26.1 99.7 18.9 At3g15440 820783 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
24.6 99.6 36.1 At5g07100 830601 WRKY26 Encodes WRKY DNA-binding protein 26 (WRKY26). O.I. C.G. H.G.
24.5 99.6 36.5 At2g42280 818829 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PM O.I. C.G. H.G.
24.1 99.6 320.3 At5g28050 832875 cytidine/deoxycytidylate deaminase family protein F:hydrolase activity, zinc ion binding, catalytic activity;P:pyrimidine ribonucleotide metabolic process, pyrimidine deoxyribonucleoside interconversion, deoxyribose phosphate metabolic process, anaerobic respiration;C:cellular_component unknown;BOFMPA O.I. C.G. H.G.
23.9 99.6 80.1 At1g55510 841998 BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT) branched-chain alpha-keto acid decarboxylase E1 beta O.I. C.G. H.G.
23.9 99.6 78.2 At2g28630 817412 KCS12 (3-KETOACYL-COA SYNTHASE 12) Encodes KCS12, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
22.9 99.6 215.7 At5g64570 836578 XYL4 Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases. O.I. C.G. H.G.
20.6 99.6 113.9 At5g19890 832111 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:nucleus, cytoplasm;PFOB O.I. C.G. H.G.
20.2 99.6 158.1 At1g06570 837168 PDS1 (PHYTOENE DESATURATION 1) Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants. O.I. C.G. H.G.
20.2 99.6 100.4 At1g15040 838069 glutamine amidotransferase-related F:hydrolase activity;P:glutamine metabolic process;C:cellular_component unknown;BOPAFM O.I. C.G. H.G.
20.0 99.6 55.5 At3g19860 821523 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFBV O.I. C.G. H.G.
19.6 99.6 247.8 At1g12780 837834 UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1) Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress. O.I. C.G. H.G.
18.5 99.5 88.9 At4g03510 825654 RMA1 RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. O.I. C.G. H.G.
18.0 99.5 228.1 At2g14170 815903 ALDH6B2 Arabidopsis thaliana methylmalonate-semialdehyde dehydrogenase O.I. C.G. H.G.
17.8 99.5 378.0 At5g49360 834996 BXL1 (BETA-XYLOSIDASE 1) Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members. O.I. C.G. H.G.
17.0 99.5 71.6 At2g41230 818722 unknown protein F:unknown;P:biological_process unknown;C:unknown;PM O.I. C.G. H.G.
16.2 99.5 121.7 At4g37520 829907 peroxidase 50 (PER50) (P50) (PRXR2) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cytoplasm;PFOM O.I. C.G. H.G.
16.0 99.5 580.9 At1g75750 843908 GASA1 (GAST1 PROTEIN HOMOLOG 1) GA-responsive GAST1 protein homolog regulated by BR and GA antagonistically. Possibly involved in cell elongation based on expression data O.I. C.G. H.G.
16.0 99.5 382.9 At5g14780 831330 FDH (FORMATE DEHYDROGENASE) Encodes a NAD-dependent formate dehydrogenase. O.I. C.G. H.G.
15.9 99.5 74.6 At2g39980 818586 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
15.6 99.5 17.2 At4g15700 827247 glutaredoxin family protein F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB O.I. C.G. H.G.
15.5 99.5 309.6 At3g30775 822833 ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5) Encodes a proline oxidase that is predicted to localize to the inner mitochondrial membrane, its mRNA expression induced by high levels of Al and by osmotic stress. The promoter contains an L-proline-inducible element. O.I. C.G. H.G.
15.4 99.5 225.0 At4g12480 826860 pEARLI 1 a putative lipid transfer protein, vernalization-responsive and cold-induced O.I. C.G. H.G.
15.3 99.4 227.7 At4g16260 827320 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:cell wall, plasma membrane;PO O.I. C.G. H.G.
15.2 99.4 26.8 At3g01850 821068 ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative F:ribulose-phosphate 3-epimerase activity, catalytic activity;P:carbohydrate metabolic process, metabolic process;C:endomembrane system;OBMFPA O.I. C.G. H.G.
15.1 99.4 313.5 At1g54100 841849 ALDH7B4 (Aldehyde Dehydrogenase 7B4) Aldehyde dehydrogenase O.I. C.G. H.G.
15.1 99.4 92.3 At1g07040 837215 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;BOP O.I. C.G. H.G.
15.0 99.4 50.2 At1g76410 843974 ATL8 F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
14.9 99.4 4.4 At5g03310 831879 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
14.5 99.4 45.8 At1g22500 838856 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
14.4 99.4 69.1 At1g60140 842309 ATTPS10 (trehalose phosphate synthase) Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain. O.I. C.G. H.G.
14.4 99.4 51.8 At5g23050 832369 AAE17 (ACYL-ACTIVATING ENZYME 17) F:catalytic activity, ligase activity;P:metabolic process;C:cellular_component unknown;BOMFAP O.I. C.G. H.G.
14.3 99.4 61.3 At5g38930 833885 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:cell wall;PFO O.I. C.G. H.G.
14.3 99.4 49.2 At4g21410 827893 protein kinase family protein F:kinase activity;P:response to abscisic acid stimulus;C:plasma membrane, vacuole;MPOBFVA O.I. C.G. H.G.
14.1 99.4 32.6 At1g64160 842720 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
13.9 99.4 34.6 At1g73830 843719 BEE3 (BR ENHANCED EXPRESSION 3) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMBO O.I. C.G. H.G.
13.8 99.4 448.8 At4g35770 829730 SEN1 (SENESCENCE 1) Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant. O.I. C.G. H.G.
13.8 99.4 113.0 At3g06850 819869 BCE2 dihydrolipoamide branched chain acyltransferase O.I. C.G. H.G.
13.1 99.4 116.7 At1g63800 842683 UBC5 (ubiquitin-conjugating enzyme 5) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV O.I. C.G. H.G.
13.0 99.4 160.1 At4g15530 827226 PPDK (pyruvate orthophosphate dikinase) The product of this long transcript was shown to be targeted to the chloroplast, whereas the shorter transcript (no targeting sequence) accumulates in the cytosol. They were also found in slightly different tissues. O.I. C.G. H.G.
12.9 99.3 67.2 At3g16150 820860 L-asparaginase, putative / L-asparagine amidohydrolase, putative F:asparaginase activity;P:glycoprotein catabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
12.8 99.3 54.7 At1g49570 841381 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
12.7 99.3 57.6 At2g26980 817240 CIPK3 (CBL-INTERACTING PROTEIN KINASE 3) encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers. O.I. C.G. H.G.
12.6 99.3 54.3 At2g40420 818635 amino acid transporter family protein Encodes a putative amino acid transporter. O.I. C.G. H.G.
12.5 99.3 247.4 At5g56870 835789 BGAL4 (beta-galactosidase 4) F:beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;PBMFOA O.I. C.G. H.G.
12.5 99.3 119.0 At5g21170 832243 5'-AMP-activated protein kinase beta-2 subunit, putative F:AMP-activated protein kinase activity;P:N-terminal protein myristoylation;C:chloroplast;MFPOB O.I. C.G. H.G.
12.4 99.3 218.8 At4g14130 827051 XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7) xyloglucan endotransglycosylase-related protein (XTR7) O.I. C.G. H.G.
12.3 99.3 537.9 At4g30270 829150 MERI5B (meristem-5) encodes a protein similar to endo xyloglucan transferase in sequence. It is also very similar to BRU1 in soybean, which is involved in brassinosteroid response. O.I. C.G. H.G.
12.1 99.3 36.4 At3g01970 821270 WRKY45 member of WRKY Transcription Factor; Group I O.I. C.G. H.G.
11.9 99.3 107.4 At4g34030 829549 MCCB (3-METHYLCROTONYL-COA CARBOXYLASE) MCC-B is involved in leucine degradation in mitochondria. The active protein is a dimer of MCC-A and MCC-B. MCC-A is biotinylated whereas MCC-B is not. O.I. C.G. H.G.
11.8 99.3 115.5 At5g05440 830427 unknown protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
11.7 99.3 83.2 At3g46280 823773 protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMFBO O.I. C.G. H.G.
11.6 99.3 301.1 At4g34710 829623 ADC2 (ARGININE DECARBOXYLASE 2) encodes a arginine decarboxylase (ADC), a rate-limiting enzyme that catalyzes the first step of polyamine (PA) biosynthesis via ADC pathway in Arabidopsis thaliana. Arabidopsis genome has two ADC paralogs, ADC1 and ADC2. ADC2 is stress-inducible (osmotic stress). Double mutant analysis showed that ADC genes are essential for the production of PA, and are required for normal seed development. Overexpression causes phenotypes similar to GA-deficient plants and these plants show reduced levels of GA due to lower expression levels of AtGA20ox1, AtGA3ox3 and AtGA3ox1. O.I. C.G. H.G.
11.6 99.3 69.3 At1g80160 844356 lactoylglutathione lyase family protein / glyoxalase I family protein F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:unknown;BPO O.I. C.G. H.G.
11.5 99.3 49.6 At3g60530 825224 zinc finger (GATA type) family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOM O.I. C.G. H.G.
11.4 99.3 75.5 At4g36730 829826 GBF1 member of a gene family encoding basic leucine zipper proteins (GBFs) which bind the G-box O.I. C.G. H.G.
11.2 99.2 485.2 At5g20250 832147 DIN10 (DARK INDUCIBLE 10) encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. O.I. C.G. H.G.
11.2 99.2 57.8 At5g41080 834110 glycerophosphoryl diester phosphodiesterase family protein F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
11.1 99.2 49.5 At1g35670 840471 ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2) Encodes a Ca(2+)-dependent, calmodulin-independent protein kinase that is rapidly induced by drought and high-salt stress but not by low-temperature stress or heat stress. Positive regulator of ABA signaling. Phosphorylates ABA responsive transcription factors ABF1 and ABF4. O.I. C.G. H.G.
10.9 99.2 11.2 At1g28010 839694 PGP14 (P-GLYCOPROTEIN 14) F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPV O.I. C.G. H.G.
10.8 99.2 232.0 At3g22200 821784 POP2 (POLLEN-PISTIL INCOMPATIBILITY 2) Genetically redundant with POP3;mediates pollen tube guidance. Double mutants are self sterile; gamma-aminobutyrate transaminase subunit precursor; nuclear gene for mitochondrial product. Encodes gamma-aminobutyrate transaminase that uses pyruvate instead of alpha-ketoglutarate as cosubstrate. Mutations in POP2/HER1 render roots resistant to the inhibitory growth effects of the volatile organic compound E-2-hexenal implicated in plant defense. O.I. C.G. H.G.
10.6 99.2 341.6 At1g73260 843660 trypsin and protease inhibitor family protein / Kunitz family protein F:endopeptidase inhibitor activity;P:response to salt stress;C:mitochondrion;PO O.I. C.G. H.G.
10.6 99.2 292.8 At5g07440 830635 GDH2 (GLUTAMATE DEHYDROGENASE 2) Encodes the beta-subunit of the glutamate dehydrogenase. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells. O.I. C.G. H.G.
10.6 99.2 272.5 At1g11260 837667 STP1 (SUGAR TRANSPORTER 1) Encodes a H+/hexose cotransporter. O.I. C.G. H.G.
10.6 99.2 66.4 At4g25170 828620 - F:molecular_function unknown;P:biological_process unknown;C:unknown;PMBFO O.I. C.G. H.G.
10.5 99.2 267.3 At1g76490 843982 HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1) Encodes a 3-hydroxy-3-methylglutaryl coenzyme A reductase, which is involved in melavonate biosynthesis and performs the first committed step in isoprenoid biosynthesis. Expression is activated in dark in leaf tissue but not controlled by light in the root (confine O.I. C.G. H.G.
10.3 99.2 333.6 At1g56220 842075 dormancy/auxin associated family protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
10.1 99.2 27.1 At1g77380 844074 AAP3 Amino acid permease which transports basic amino acids. O.I. C.G. H.G.
10.0 99.2 74.4 At5g01810 830556 CIPK15 (CBL-INTERACTING PROTEIN KINASE 15) Encodes a CBL-interacting serine/threonine protein kinase, also has similarities to SOS2 kinase. O.I. C.G. H.G.
10.0 99.2 32.2 At1g75440 843880 UBC16 (ubiquitin-conjugating enzyme 16) F:ubiquitin-protein ligase activity, small conjugating protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MFOPVB O.I. C.G. H.G.
9.9 99.1 43.8 At1g19540 838541 isoflavone reductase, putative F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:cellular_component unknown;BPFOVMA O.I. C.G. H.G.
9.6 99.1 13.9 At5g14470 831298 GHMP kinase-related F:kinase activity, phosphotransferase activity, alcohol group as acceptor, galactokinase activity, ATP binding;P:metabolic process, phosphorylation;C:cytoplasm;BOPAM O.I. C.G. H.G.
9.4 99.1 61.4 At4g33540 829493 metallo-beta-lactamase family protein F:hydrolase activity, catalytic activity;P:response to arsenic, metabolic process;C:chloroplast;OBAPMF O.I. C.G. H.G.
9.4 99.1 38.6 At1g79440 844282 ALDH5F1 Encodes a mitochondrial succinic semialdehyde dehydrogenase (SSADH). Nomenclature according to Kirch, et al (2004). O.I. C.G. H.G.
9.2 99.1 259.1 At2g05540 815103 glycine-rich protein F:unknown;P:unknown;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
9.2 99.1 172.4 At1g80380 844378 phosphoribulokinase/uridine kinase-related encodes a glycerate kinase which catalyzes the last step of photorespiration C2 cycle. O.I. C.G. H.G.
9.2 99.1 98.5 At4g33150 829452 lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme F:unknown;P:unknown;C:unknown;OBFMPA O.I. C.G. H.G.
9.2 99.1 64.5 At1g26665 839207 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
9.2 99.1 20.3 At5g64110 836532 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:membrane;PFOB O.I. C.G. H.G.
9.0 99.1 106.7 At5g54080 835494 HGO (HOMOGENTISATE 1,2-DIOXYGENASE) homogentisate 1,2-dioxygenase O.I. C.G. H.G.
9.0 99.1 101.9 At1g09430 837466 ACLA-3 Encodes subunit A of the heteromeric enzyme ATP citrate lyase (ACL). In animals, ACL is encoded by a single gene; ACL in Arabidopsis is composed of two polypeptides, ACLA (encoded by 3 genes) and ACLB (encoded by 2 genes). The holoenzyme has an A(4)B(4)stoichiometry. Expression of both ACLA and ACLB but not of either of the subunits alone results in ACL activity. O.I. C.G. H.G.
9.0 99.1 20.1 At2g42870 818887 PAR1 (PHY RAPIDLY REGULATED 1) Encodes PHYTOCHROME RAPIDLY REGULATED1 (PAR1), an atypical basic helix-loop-helix (bHLP) protein. Closely related to PAR2 (At3g58850). Up regulated after simulated shade perception. Acts in the nucleus to control plant development and as a negative regulator of shade avoidance response. Functions as transcriptional repressor of auxin-responsive genes SAUR15 (AT4G38850) and SAUR68 (AT1G29510). O.I. C.G. H.G.
8.9 99.0 126.3 At5g51070 835180 ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1) ATP-dependent Clp protease regulatory subunit O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
76.9	99.9	625.3	At3g47340	823888	ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)	encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.	O.I.	C.G.	H.G.
71.0	99.9	134.8	At1g21400	838739	2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative	F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
63.6	99.8	266.1	At5g57655	835871	xylose isomerase family protein	F:xylose isomerase activity;P:carbohydrate metabolic process;C:endoplasmic reticulum, plasma membrane, vacuole;BOPMF	O.I.	C.G.	H.G.
61.7	99.8	128.8	At1g08630	837385	THA1 (Threonine Aldolase 1)	Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.	O.I.	C.G.	H.G.
54.2	99.8	240.8	At1g10070	837543	ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)	Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.	O.I.	C.G.	H.G.
43.4	99.8	315.9	At1g19530	838540	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
41.5	99.8	62.3	At2g43400	818941	ETFQO (electron-transfer flavoprotein:ubiquinone oxidoreductase)	Encodes a unique electron-transfer flavoprotein:ubiquinone oxidoreductase that is localized to the mitochondrion. Mutants are more sensitive to sugar starvation when plants are kept in the dark for long periods.	O.I.	C.G.	H.G.
37.3	99.7	261.7	At1g66180	842933	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFOM	O.I.	C.G.	H.G.
36.3	99.7	136.6	At3g13450	820547	DIN4 (DARK INDUCIBLE 4)	branched chain alpha-keto acid dehydrogenase E1 beta	O.I.	C.G.	H.G.
35.8	99.7	151.1	At3g45300	823668	IVD (ISOVALERYL-COA-DEHYDROGENASE)	Encodes isovaleryl-coenzyme a dehydrogenase.	O.I.	C.G.	H.G.
32.7	99.7	188.1	At1g03090	838362	MCCA	MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion.	O.I.	C.G.	H.G.
31.1	99.7	91.7	At1g55810	842031	uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative	F:uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding;P:biosynthetic process, metabolic process;C:cellular_component unknown;BOMPFAV	O.I.	C.G.	H.G.
29.8	99.7	50.9	At4g36410	829793	UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)	ubiquitin-conjugating enzyme	O.I.	C.G.	H.G.
28.4	99.7	159.1	At2g19800	816499	MIOX2 (MYO-INOSITOL OXYGENASE 2)	Encodes a myo-inositol oxygenase family gene.	O.I.	C.G.	H.G.
28.4	99.7	138.2	At5g18170	831935	GDH1 (GLUTAMATE DEHYDROGENASE 1)	Encodes the 43 kDa alpha-subunit of the glutamate dehydrogenase with a putative mitochondrial transit polypeptide and NAD(H)- and alpha-ketoglutarate-binding domains. Mitochondrial localization confirmed by subcellular fractionation. Combines in several ratios with GDH2 protein (GDH-beta) to form seven isoenzymes. Catalyzes the cleavage of glycine residues. May be involved in ammonia assimilation under conditions of inorganic nitrogen excess. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells.	O.I.	C.G.	H.G.
28.3	99.7	484.4	At1g62480	842545	vacuolar calcium-binding protein-related	F:unknown;P:response to cadmium ion, response to salt stress;C:cellular_component unknown;OMBFPVA	O.I.	C.G.	H.G.
26.7	99.7	150.5	At5g01210	831901	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
26.1	99.7	18.9	At3g15440	820783	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
24.6	99.6	36.1	At5g07100	830601	WRKY26	Encodes WRKY DNA-binding protein 26 (WRKY26).	O.I.	C.G.	H.G.
24.5	99.6	36.5	At2g42280	818829	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PM	O.I.	C.G.	H.G.
24.1	99.6	320.3	At5g28050	832875	cytidine/deoxycytidylate deaminase family protein	F:hydrolase activity, zinc ion binding, catalytic activity;P:pyrimidine ribonucleotide metabolic process, pyrimidine deoxyribonucleoside interconversion, deoxyribose phosphate metabolic process, anaerobic respiration;C:cellular_component unknown;BOFMPA	O.I.	C.G.	H.G.
23.9	99.6	80.1	At1g55510	841998	BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT)	branched-chain alpha-keto acid decarboxylase E1 beta	O.I.	C.G.	H.G.
23.9	99.6	78.2	At2g28630	817412	KCS12 (3-KETOACYL-COA SYNTHASE 12)	Encodes KCS12, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
22.9	99.6	215.7	At5g64570	836578	XYL4	Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.	O.I.	C.G.	H.G.
20.6	99.6	113.9	At5g19890	832111	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:nucleus, cytoplasm;PFOB	O.I.	C.G.	H.G.
20.2	99.6	158.1	At1g06570	837168	PDS1 (PHYTOENE DESATURATION 1)	Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants.	O.I.	C.G.	H.G.
20.2	99.6	100.4	At1g15040	838069	glutamine amidotransferase-related	F:hydrolase activity;P:glutamine metabolic process;C:cellular_component unknown;BOPAFM	O.I.	C.G.	H.G.
20.0	99.6	55.5	At3g19860	821523	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFBV	O.I.	C.G.	H.G.
19.6	99.6	247.8	At1g12780	837834	UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1)	Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress.	O.I.	C.G.	H.G.
18.5	99.5	88.9	At4g03510	825654	RMA1	RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway.	O.I.	C.G.	H.G.
18.0	99.5	228.1	At2g14170	815903	ALDH6B2	Arabidopsis thaliana methylmalonate-semialdehyde dehydrogenase	O.I.	C.G.	H.G.
17.8	99.5	378.0	At5g49360	834996	BXL1 (BETA-XYLOSIDASE 1)	Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members.	O.I.	C.G.	H.G.
17.0	99.5	71.6	At2g41230	818722	unknown protein	F:unknown;P:biological_process unknown;C:unknown;PM	O.I.	C.G.	H.G.
16.2	99.5	121.7	At4g37520	829907	peroxidase 50 (PER50) (P50) (PRXR2)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cytoplasm;PFOM	O.I.	C.G.	H.G.
16.0	99.5	580.9	At1g75750	843908	GASA1 (GAST1 PROTEIN HOMOLOG 1)	GA-responsive GAST1 protein homolog regulated by BR and GA antagonistically. Possibly involved in cell elongation based on expression data	O.I.	C.G.	H.G.
16.0	99.5	382.9	At5g14780	831330	FDH (FORMATE DEHYDROGENASE)	Encodes a NAD-dependent formate dehydrogenase.	O.I.	C.G.	H.G.
15.9	99.5	74.6	At2g39980	818586	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
15.6	99.5	17.2	At4g15700	827247	glutaredoxin family protein	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
15.5	99.5	309.6	At3g30775	822833	ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5)	Encodes a proline oxidase that is predicted to localize to the inner mitochondrial membrane, its mRNA expression induced by high levels of Al and by osmotic stress. The promoter contains an L-proline-inducible element.	O.I.	C.G.	H.G.
15.4	99.5	225.0	At4g12480	826860	pEARLI 1	a putative lipid transfer protein, vernalization-responsive and cold-induced	O.I.	C.G.	H.G.
15.3	99.4	227.7	At4g16260	827320	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:cell wall, plasma membrane;PO	O.I.	C.G.	H.G.
15.2	99.4	26.8	At3g01850	821068	ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative	F:ribulose-phosphate 3-epimerase activity, catalytic activity;P:carbohydrate metabolic process, metabolic process;C:endomembrane system;OBMFPA	O.I.	C.G.	H.G.
15.1	99.4	313.5	At1g54100	841849	ALDH7B4 (Aldehyde Dehydrogenase 7B4)	Aldehyde dehydrogenase	O.I.	C.G.	H.G.
15.1	99.4	92.3	At1g07040	837215	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast;BOP	O.I.	C.G.	H.G.
15.0	99.4	50.2	At1g76410	843974	ATL8	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
14.9	99.4	4.4	At5g03310	831879	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
14.5	99.4	45.8	At1g22500	838856	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
14.4	99.4	69.1	At1g60140	842309	ATTPS10 (trehalose phosphate synthase)	Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.	O.I.	C.G.	H.G.
14.4	99.4	51.8	At5g23050	832369	AAE17 (ACYL-ACTIVATING ENZYME 17)	F:catalytic activity, ligase activity;P:metabolic process;C:cellular_component unknown;BOMFAP	O.I.	C.G.	H.G.
14.3	99.4	61.3	At5g38930	833885	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:cell wall;PFO	O.I.	C.G.	H.G.
14.3	99.4	49.2	At4g21410	827893	protein kinase family protein	F:kinase activity;P:response to abscisic acid stimulus;C:plasma membrane, vacuole;MPOBFVA	O.I.	C.G.	H.G.
14.1	99.4	32.6	At1g64160	842720	disease resistance-responsive family protein / dirigent family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
13.9	99.4	34.6	At1g73830	843719	BEE3 (BR ENHANCED EXPRESSION 3)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMBO	O.I.	C.G.	H.G.
13.8	99.4	448.8	At4g35770	829730	SEN1 (SENESCENCE 1)	Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.	O.I.	C.G.	H.G.
13.8	99.4	113.0	At3g06850	819869	BCE2	dihydrolipoamide branched chain acyltransferase	O.I.	C.G.	H.G.
13.1	99.4	116.7	At1g63800	842683	UBC5 (ubiquitin-conjugating enzyme 5)	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV	O.I.	C.G.	H.G.
13.0	99.4	160.1	At4g15530	827226	PPDK (pyruvate orthophosphate dikinase)	The product of this long transcript was shown to be targeted to the chloroplast, whereas the shorter transcript (no targeting sequence) accumulates in the cytosol. They were also found in slightly different tissues.	O.I.	C.G.	H.G.
12.9	99.3	67.2	At3g16150	820860	L-asparaginase, putative / L-asparagine amidohydrolase, putative	F:asparaginase activity;P:glycoprotein catabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
12.8	99.3	54.7	At1g49570	841381	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
12.7	99.3	57.6	At2g26980	817240	CIPK3 (CBL-INTERACTING PROTEIN KINASE 3)	encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers.	O.I.	C.G.	H.G.
12.6	99.3	54.3	At2g40420	818635	amino acid transporter family protein	Encodes a putative amino acid transporter.	O.I.	C.G.	H.G.
12.5	99.3	247.4	At5g56870	835789	BGAL4 (beta-galactosidase 4)	F:beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;PBMFOA	O.I.	C.G.	H.G.
12.5	99.3	119.0	At5g21170	832243	5'-AMP-activated protein kinase beta-2 subunit, putative	F:AMP-activated protein kinase activity;P:N-terminal protein myristoylation;C:chloroplast;MFPOB	O.I.	C.G.	H.G.
12.4	99.3	218.8	At4g14130	827051	XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)	xyloglucan endotransglycosylase-related protein (XTR7)	O.I.	C.G.	H.G.
12.3	99.3	537.9	At4g30270	829150	MERI5B (meristem-5)	encodes a protein similar to endo xyloglucan transferase in sequence. It is also very similar to BRU1 in soybean, which is involved in brassinosteroid response.	O.I.	C.G.	H.G.
12.1	99.3	36.4	At3g01970	821270	WRKY45	member of WRKY Transcription Factor; Group I	O.I.	C.G.	H.G.
11.9	99.3	107.4	At4g34030	829549	MCCB (3-METHYLCROTONYL-COA CARBOXYLASE)	MCC-B is involved in leucine degradation in mitochondria. The active protein is a dimer of MCC-A and MCC-B. MCC-A is biotinylated whereas MCC-B is not.	O.I.	C.G.	H.G.
11.8	99.3	115.5	At5g05440	830427	unknown protein	F:molecular_function unknown;P:unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
11.7	99.3	83.2	At3g46280	823773	protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
11.6	99.3	301.1	At4g34710	829623	ADC2 (ARGININE DECARBOXYLASE 2)	encodes a arginine decarboxylase (ADC), a rate-limiting enzyme that catalyzes the first step of polyamine (PA) biosynthesis via ADC pathway in Arabidopsis thaliana. Arabidopsis genome has two ADC paralogs, ADC1 and ADC2. ADC2 is stress-inducible (osmotic stress). Double mutant analysis showed that ADC genes are essential for the production of PA, and are required for normal seed development. Overexpression causes phenotypes similar to GA-deficient plants and these plants show reduced levels of GA due to lower expression levels of AtGA20ox1, AtGA3ox3 and AtGA3ox1.	O.I.	C.G.	H.G.
11.6	99.3	69.3	At1g80160	844356	lactoylglutathione lyase family protein / glyoxalase I family protein	F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:unknown;BPO	O.I.	C.G.	H.G.
11.5	99.3	49.6	At3g60530	825224	zinc finger (GATA type) family protein	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOM	O.I.	C.G.	H.G.
11.4	99.3	75.5	At4g36730	829826	GBF1	member of a gene family encoding basic leucine zipper proteins (GBFs) which bind the G-box	O.I.	C.G.	H.G.
11.2	99.2	485.2	At5g20250	832147	DIN10 (DARK INDUCIBLE 10)	encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.	O.I.	C.G.	H.G.
11.2	99.2	57.8	At5g41080	834110	glycerophosphoryl diester phosphodiesterase family protein	F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
11.1	99.2	49.5	At1g35670	840471	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	Encodes a Ca(2+)-dependent, calmodulin-independent protein kinase that is rapidly induced by drought and high-salt stress but not by low-temperature stress or heat stress. Positive regulator of ABA signaling. Phosphorylates ABA responsive transcription factors ABF1 and ABF4.	O.I.	C.G.	H.G.
10.9	99.2	11.2	At1g28010	839694	PGP14 (P-GLYCOPROTEIN 14)	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPV	O.I.	C.G.	H.G.
10.8	99.2	232.0	At3g22200	821784	POP2 (POLLEN-PISTIL INCOMPATIBILITY 2)	Genetically redundant with POP3;mediates pollen tube guidance. Double mutants are self sterile; gamma-aminobutyrate transaminase subunit precursor; nuclear gene for mitochondrial product. Encodes gamma-aminobutyrate transaminase that uses pyruvate instead of alpha-ketoglutarate as cosubstrate. Mutations in POP2/HER1 render roots resistant to the inhibitory growth effects of the volatile organic compound E-2-hexenal implicated in plant defense.	O.I.	C.G.	H.G.
10.6	99.2	341.6	At1g73260	843660	trypsin and protease inhibitor family protein / Kunitz family protein	F:endopeptidase inhibitor activity;P:response to salt stress;C:mitochondrion;PO	O.I.	C.G.	H.G.
10.6	99.2	292.8	At5g07440	830635	GDH2 (GLUTAMATE DEHYDROGENASE 2)	Encodes the beta-subunit of the glutamate dehydrogenase. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells.	O.I.	C.G.	H.G.
10.6	99.2	272.5	At1g11260	837667	STP1 (SUGAR TRANSPORTER 1)	Encodes a H+/hexose cotransporter.	O.I.	C.G.	H.G.
10.6	99.2	66.4	At4g25170	828620	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;PMBFO	O.I.	C.G.	H.G.
10.5	99.2	267.3	At1g76490	843982	HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1)	Encodes a 3-hydroxy-3-methylglutaryl coenzyme A reductase, which is involved in melavonate biosynthesis and performs the first committed step in isoprenoid biosynthesis. Expression is activated in dark in leaf tissue but not controlled by light in the root (confine	O.I.	C.G.	H.G.
10.3	99.2	333.6	At1g56220	842075	dormancy/auxin associated family protein	F:molecular_function unknown;P:unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
10.1	99.2	27.1	At1g77380	844074	AAP3	Amino acid permease which transports basic amino acids.	O.I.	C.G.	H.G.
10.0	99.2	74.4	At5g01810	830556	CIPK15 (CBL-INTERACTING PROTEIN KINASE 15)	Encodes a CBL-interacting serine/threonine protein kinase, also has similarities to SOS2 kinase.	O.I.	C.G.	H.G.
10.0	99.2	32.2	At1g75440	843880	UBC16 (ubiquitin-conjugating enzyme 16)	F:ubiquitin-protein ligase activity, small conjugating protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MFOPVB	O.I.	C.G.	H.G.
9.9	99.1	43.8	At1g19540	838541	isoflavone reductase, putative	F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:cellular_component unknown;BPFOVMA	O.I.	C.G.	H.G.
9.6	99.1	13.9	At5g14470	831298	GHMP kinase-related	F:kinase activity, phosphotransferase activity, alcohol group as acceptor, galactokinase activity, ATP binding;P:metabolic process, phosphorylation;C:cytoplasm;BOPAM	O.I.	C.G.	H.G.
9.4	99.1	61.4	At4g33540	829493	metallo-beta-lactamase family protein	F:hydrolase activity, catalytic activity;P:response to arsenic, metabolic process;C:chloroplast;OBAPMF	O.I.	C.G.	H.G.
9.4	99.1	38.6	At1g79440	844282	ALDH5F1	Encodes a mitochondrial succinic semialdehyde dehydrogenase (SSADH). Nomenclature according to Kirch, et al (2004).	O.I.	C.G.	H.G.
9.2	99.1	259.1	At2g05540	815103	glycine-rich protein	F:unknown;P:unknown;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
9.2	99.1	172.4	At1g80380	844378	phosphoribulokinase/uridine kinase-related	encodes a glycerate kinase which catalyzes the last step of photorespiration C2 cycle.	O.I.	C.G.	H.G.
9.2	99.1	98.5	At4g33150	829452	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme	F:unknown;P:unknown;C:unknown;OBFMPA	O.I.	C.G.	H.G.
9.2	99.1	64.5	At1g26665	839207	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
9.2	99.1	20.3	At5g64110	836532	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:membrane;PFOB	O.I.	C.G.	H.G.
9.0	99.1	106.7	At5g54080	835494	HGO (HOMOGENTISATE 1,2-DIOXYGENASE)	homogentisate 1,2-dioxygenase	O.I.	C.G.	H.G.
9.0	99.1	101.9	At1g09430	837466	ACLA-3	Encodes subunit A of the heteromeric enzyme ATP citrate lyase (ACL). In animals, ACL is encoded by a single gene; ACL in Arabidopsis is composed of two polypeptides, ACLA (encoded by 3 genes) and ACLB (encoded by 2 genes). The holoenzyme has an A(4)B(4)stoichiometry. Expression of both ACLA and ACLB but not of either of the subunits alone results in ACL activity.	O.I.	C.G.	H.G.
9.0	99.1	20.1	At2g42870	818887	PAR1 (PHY RAPIDLY REGULATED 1)	Encodes PHYTOCHROME RAPIDLY REGULATED1 (PAR1), an atypical basic helix-loop-helix (bHLP) protein. Closely related to PAR2 (At3g58850). Up regulated after simulated shade perception. Acts in the nucleus to control plant development and as a negative regulator of shade avoidance response. Functions as transcriptional repressor of auxin-responsive genes SAUR15 (AT4G38850) and SAUR68 (AT1G29510).	O.I.	C.G.	H.G.
8.9	99.0	126.3	At5g51070	835180	ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1)	ATP-dependent Clp protease regulatory subunit	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM158701
Assay name	HY213-MOCK-REP1
GSE experiment	GSE6954: Identification of AGL24 downstream genes by using XVE inducible system

Microarray experiments to specifically-expressed genes

GSM ID GSM158701 Assay name HY213-MOCK-REP1 GSE experiment GSE6954: Identification of AGL24 downstream genes by using XVE inducible system

GSM ID GSM158701

Assay name HY213-MOCK-REP1

GSE experiment GSE6954: Identification of AGL24 downstream genes by using XVE inducible system