Microarray experiments to specifically-expressed genes

GSM ID GSM157392
Assay name Sakakibara_1-11_DMSO-treatment-mutant_Rep2_ATH1
GSE experiment GSE6832: Cytokinin treatment on aerial parts of seedlings

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
29.899.7107.0At5g52520835328OVA6 (OVULE ABORTION 6)F:proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:regulation of photosynthesis, seed development, embryo sac development, ovule development, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast, chloroplast stroma;BOAMFPO.I.C.G.H.G.
25.499.697.4At3g59780825147-F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPVO.I.C.G.H.G.
21.699.635.2At3g03770821164leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
20.499.6124.4At3g53560824524chloroplast lumen common family proteinF:binding;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOMPAFO.I.C.G.H.G.
19.999.669.5At3g23410821922alcohol oxidase-relatedEncodes a fatty alcohol oxidase.O.I.C.G.H.G.
18.399.520.7At4g30825829206pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:cell cycle;C:nucleus;POMFBAO.I.C.G.H.G.
18.299.5110.6At1g24170839030LGT9Encodes a protein with putative galacturonosyltransferase activity.O.I.C.G.H.G.
17.799.5289.2At3g13470820549chaperonin, putativeF:protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:in 7 components;BOMFPAVO.I.C.G.H.G.
17.099.569.5At3g53900824557uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putativeF:uracil phosphoribosyltransferase activity;P:uracil salvage, nucleoside metabolic process;C:chloroplast;BOFMPAO.I.C.G.H.G.
16.899.559.8At3g52750824441FTSZ2-2Nuclear gene that encodes a plastidial division protein (FtsZ2-2).O.I.C.G.H.G.
16.699.549.9At1g31690840056amine oxidase/ copper ion binding / quinone bindingF:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPAO.I.C.G.H.G.
16.499.528.9At1g70070843343EMB25 (EMBRYO DEFECTIVE 25)Allelic to ISE2(increased size exclusion limit of plasmodesmata 2). Mutants maintain dilated plasmodesmata at the embryonic torpedo stage.O.I.C.G.H.G.
16.199.519.5At2g15820816078OTP51 (ORGANELLE TRANSCRIPT PROCESSING 51)Encodes a protein that promotes splicing of type II introns. otp51 mutants fail to splice intron 2 of plastid ycf3 transcripts, a factor required for the assembly of Photosystem I. Therefore, homozygous otp51 mutants have profound photosynthetic defects and can only survive in sucrose-supplemented in vitro cultures under low light conditions. OTP51 may also be involved in splicing several other transcripts and precursor forms of the trnL, trnG, trnI, and trnA transcripts also accumulate in otp51 mutants. Although OTP51 shares some homology with DNA endonucleases, it lacks key catalytic residues suggesting that it does not participate in DNA cleavage.O.I.C.G.H.G.
14.699.4239.4At1g70370843373BURP domain-containing protein / polygalacturonase, putativeF:polygalacturonase activity;P:biological_process unknown;C:endomembrane system;OBMPFAVO.I.C.G.H.G.
13.999.4100.0At4g37550829910formamidase, putative / formamide amidohydrolase, putativeF:formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;P:metabolic process;C:vacuole;BOFAPO.I.C.G.H.G.
13.899.4246.4At1g17220838293FUG1 (fu-gaeri1)Encodes a chloroplast localized protein with similarity to translation initiation factor 2. Can complement loss of INFB in E.coli suggesting FUG1 does function as a translation initiation factor in vivo. Identified as a suppressor of the leaf variegation mutant var2-6. Suppression is only seen in hypomorphs as complete loss of function alleles are embryo lethal.O.I.C.G.H.G.
13.799.421.4At3g57180824885GTP bindingF:GTP binding;P:biological_process unknown;C:chloroplast;MOBFPVAO.I.C.G.H.G.
13.699.4175.4At3g51820824345G4Encodes a protein with chlorophyll synthase activity. This enzyme has been shown to perform the esterification of chlorophyllide (a and b), the last step of chlorophyll biosynthesis. Although it can use either geranylgeranyl pyrophosphate (GGPP) or phytyl pyrophosphate (PhyPP) as substrates, the esterification reaction was faster with GGPP than with PhyPP.O.I.C.G.H.G.
13.299.431.6At1g20560838644AAE1 (ACYL ACTIVATING ENZYME 1)F:AMP binding;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
13.099.476.7At3g54090824576pfkB-type carbohydrate kinase family proteinF:kinase activity;P:acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:nucleus, chloroplast, nucleoid, cytoplasm;BOPAMFO.I.C.G.H.G.
12.999.336.0At4g04540825785protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
12.599.354.5At1g31860840076AT-IEencodes a bifunctional protein that has phosphoribosyl-ATP pyrophosphohydrolase (PRA-PH) and phosphoribosyl-AMP cyclohydrolase (PRA-CH) activities.O.I.C.G.H.G.
12.599.337.5At1g69730843309protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system, integral to membrane;MPOBFVAO.I.C.G.H.G.
12.599.322.1At3g53700824537MEE40 (maternal effect embryo arrest 40)F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;POMFBAO.I.C.G.H.G.
12.499.3126.8At1g33040840199NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVAO.I.C.G.H.G.
12.399.336.7At3g47490823903HNH endonuclease domain-containing proteinF:nucleic acid binding, endonuclease activity;P:biological_process unknown;C:cellular_component unknown;POBO.I.C.G.H.G.
12.399.310.8At1g69550843291disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBOMFO.I.C.G.H.G.
12.299.340.1At3g16290820876EMB2083 (embryo defective 2083)F:in 8 functions;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAVO.I.C.G.H.G.
12.199.354.2At5g66210836753CPK28member of Calcium Dependent Protein KinaseO.I.C.G.H.G.
12.199.310.3At4g37380829892pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBO.I.C.G.H.G.
12.099.3389.9At1g55490841996CPN60B (CHAPERONIN 60 BETA)encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.O.I.C.G.H.G.
11.899.322.2At5g63060836426transporterF:transporter activity;P:transport;C:chloroplast;MPFOO.I.C.G.H.G.
11.699.321.7At2g31730817730ethylene-responsive protein, putativeF:transcription factor activity;P:response to ethylene stimulus, response to gibberellin stimulus;C:nucleus;PO.I.C.G.H.G.
11.599.3103.8At5g44650834494unknown proteinF:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;PMOO.I.C.G.H.G.
11.499.3108.0At3g24430822033HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101)encodes a MRP-like protein with a nucleotide-binding domain.O.I.C.G.H.G.
11.499.3100.4At2g06530815211VPS2.1F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOBAVO.I.C.G.H.G.
11.499.392.2At1g51805841607leucine-rich repeat protein kinase, putativeF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
11.099.252.1At4g13670827001PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)F:unfolded protein binding, heat shock protein binding;P:protein folding, metabolic process;C:plastid chromosome, chloroplast thylakoid membrane, chloroplast, nucleoid, chloroplast envelope;BOMPFAVO.I.C.G.H.G.
10.999.216.6At1g62850842585--O.I.C.G.H.G.
10.799.285.2At3g16000820845MFP1 (MAR BINDING FILAMENT-LIKE PROTEIN 1)encodes a DNA-binding protein that binds to plastid DNA non-specifically and is associated with nucleoids and thylakoid membranes. The expression of the gene is correlated with the development of thylakoid membranes.O.I.C.G.H.G.
10.799.261.5At4g19530827695disease resistance protein (TIR-NBS-LRR class), putativeEncodes a TIR-NB-LRR resistance protein. Transient expression in tobacco induces cell death.O.I.C.G.H.G.
10.699.2202.0At2g23590816891MES8 (METHYL ESTERASE 8)Encodes a protein shown to have carboxylesterase activity in vitro. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
10.699.233.2At3g49140824075-F:unknown;P:unknown;C:unknown;PBMOFVAO.I.C.G.H.G.
10.699.232.4At4g19985827743GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:N-terminal protein myristoylation, metabolic process;C:unknown;BPOAO.I.C.G.H.G.
10.699.229.0At5g07240830615IQD24 (IQ-domain 24)F:calmodulin binding;P:biological_process unknown;C:unknown;PMOBO.I.C.G.H.G.
10.599.233.7At2g37400818316chloroplast lumen common family proteinF:binding;P:biological_process unknown;C:mitochondrion, chloroplast thylakoid lumen, plastid, chloroplast envelope;BOAMPFO.I.C.G.H.G.
10.499.2134.5At1g08520837374CHLDF:magnesium chelatase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:chlorophyll biosynthetic process;C:magnesium chelatase complex, chloroplast;MOBFPVAO.I.C.G.H.G.
10.499.239.5At1g36390840545co-chaperone grpE family proteinF:protein binding, protein homodimerization activity, chaperone binding, adenyl-nucleotide exchange factor activity;P:protein folding;C:chloroplast, chloroplast stroma;BOMPFAO.I.C.G.H.G.
10.499.235.9At2g33530817918scpl46 (serine carboxypeptidase-like 46)F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOBO.I.C.G.H.G.
10.499.235.2At5g54630835552zinc finger protein-relatedF:transcription factor activity;P:regulation of transcription;C:intracellular;PFMOO.I.C.G.H.G.
10.299.243.8At2g34640818029PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12)Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.O.I.C.G.H.G.
10.299.234.8At1g09830837515phosphoribosylamine--glycine ligase (PUR2)glycinamide ribonucleotide synthetase (GAR synthetase) that catalyzes the conversion of phosphoribosyl amine to phosphoribosyl glycineamideO.I.C.G.H.G.
10.199.2203.4At5g09650830824AtPPa6 (Arabidopsis thaliana pyrophosphorylase 6)Encodes a protein with inorganic pyrophosphatase activity.O.I.C.G.H.G.
10.199.245.1At3g20320821576TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)Encodes a permease-like component of an ABC transporter involved in lipid transfer from ER to chloroplast. A phosphatidic acid-binding protein with a predicted mycobacterial cell entry domain. It is tethered to the inner chloroplast envelope membrane facing the outer envelope membrane. Presumed bacterial orthologs of TGD1 and TGD2 in Gram-negative bacteria are typically organized in transcriptional units, suggesting their involvement in a common biological process.O.I.C.G.H.G.
10.199.238.7At1g05150839312calcium-binding EF hand family proteinF:binding, zinc ion binding, calcium ion binding;P:biological_process unknown;C:plasma membrane;BOMAPFO.I.C.G.H.G.
10.099.2150.3At3g45970823740ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1)member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
10.099.2146.3At2g40100818599LHCB4.3 (light harvesting complex PSII)Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem IIO.I.C.G.H.G.
9.999.1102.4At2g41680818766NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C)Encodes a NADPH thioredoxin reductase involved in chloroplast protection against oxidative damage.O.I.C.G.H.G.
9.999.128.0At4g25870828693unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POBO.I.C.G.H.G.
9.899.199.7At5g47435834791formyltetrahydrofolate deformylase, putativeencodes one of the two putative formyltetrahydrofolate deformylase. Located in the mitochondrion. Involved in photorespiratory tetrahydrofolate cycle.O.I.C.G.H.G.
9.899.139.0At5g05250830407unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
9.899.128.5At5g56850835787unknown proteinF:unknown;P:unknown;C:unknown;OMBFPAVO.I.C.G.H.G.
9.799.195.9At4g12060826814Clp amino terminal domain-containing proteinF:protein binding, ATP binding;P:protein metabolic process;C:plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope;BOPO.I.C.G.H.G.
9.799.146.8At5g48220834875indole-3-glycerol phosphate synthase, putativeF:indole-3-glycerol-phosphate synthase activity, catalytic activity;P:metabolic process, tryptophan metabolic process;C:chloroplast, chloroplast stroma;BOAFPO.I.C.G.H.G.
9.699.146.6At1g62560842553FMO GS-OX3 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 3)belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolatesO.I.C.G.H.G.
9.699.133.0At4g31850829314PGR3 (PROTON GRADIENT REGULATION 3)encodes a protein containing 27 pentatrico-peptide repeat (PPR) motifsO.I.C.G.H.G.
9.599.1170.3At1g62180842514APR2 (5'ADENYLYLPHOSPHOSULFATE REDUCTASE 2)encodes a adenosine 5'-phosphosulfate reductase, involved in sulfate assimilation. Is a major effect locus for natural variation of shoot sulfate content in Arabidopsis.O.I.C.G.H.G.
9.599.175.0At1g19835838571unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAVO.I.C.G.H.G.
9.499.180.3At3g24590822055PLSP1 (plastidic type I signal peptidase 1)Encodes a signal peptidase Plsp1 (plastidic type I signal peptidase 1). Required for thylakoid development. Functions in the maturation of the 75-kD component of the translocon at the outer envelope membrane of chloroplasts and oxygen evolving complex subunit 33 (OE33).O.I.C.G.H.G.
9.399.1135.5At1g18730838455NDF6 (NDH DEPENDENT FLOW 6)likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.O.I.C.G.H.G.
9.299.1163.7At3g01480821137CYP38 (cyclophilin 38)Encodes a chloroplast cyclophilin functioning in the assembly and maintenance of photosystem II (PSII) supercomplexes.O.I.C.G.H.G.
9.299.162.8At3g09210820077PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13)F:transcription elongation regulator activity;P:positive regulation of RNA elongation from RNA polymerase II promoter;C:plastid chromosome, nucleoid;BOPFO.I.C.G.H.G.
9.299.112.5At4g11460826751protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
9.199.1251.9At5g23060832370CaS (Calcium sensing receptor)F:unknown;P:unknown;C:thylakoid, mitochondrion, chloroplast thylakoid membrane, chloroplast;PBOFMO.I.C.G.H.G.
9.199.1143.4At5g49910835054CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2)heat shock protein 70 (Hsc70-7); nuclearO.I.C.G.H.G.
9.199.153.5At5g08540830754unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;POO.I.C.G.H.G.
9.199.150.3At1g61180842411disease resistance protein (CC-NBS-LRR class), putativeF:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:plasma membrane;PMBOFAO.I.C.G.H.G.
9.199.140.7At3g59040825073pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBAO.I.C.G.H.G.
8.999.0203.5At1g23740838984oxidoreductase, zinc-binding dehydrogenase family proteinF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to cold;C:in 6 components;BOFMPAVO.I.C.G.H.G.
8.999.046.1At5g36210833618serine-type peptidaseF:serine-type peptidase activity;P:proteolysis;C:chloroplast;BOMFAPO.I.C.G.H.G.
8.999.037.8At4g02130827438GATL6Encodes a protein with putative galacturonosyltransferase activity.O.I.C.G.H.G.
8.899.080.1At5g55280835621FTSZ1-1Encodes one of two FtsZ proteins, tubulin-like proteins, in Arabidopsis. It is involved in chloroplast division.O.I.C.G.H.G.
8.899.078.4At5g18660831984PCB2 (PALE-GREEN AND CHLOROPHYLL B REDUCED 2)Encodes a protein with 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity. Mutants accumulate divinyl chlorophyll rather than monovinyl chlorophyll.O.I.C.G.H.G.
8.799.0137.0At1g43560840939Aty2 (Arabidopsis thioredoxin y2)F:electron carrier activity, protein disulfide oxidoreductase activity;P:glycerol ether metabolic process, cell redox homeostasis;C:chloroplast stroma, chloroplast;BOMPFAVO.I.C.G.H.G.
8.799.031.0At1g53440841779leucine-rich repeat family protein / protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.C.G.H.G.



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