Microarray experiments to specifically-expressed genes

GSM ID GSM157389
Assay name Sakakibara_1-8_DMSO-treatment-wild_Rep2_ATH1
GSE experiment GSE6832: Cytokinin treatment on aerial parts of seedlings

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
22.999.693.8At5g52520835328OVA6 (OVULE ABORTION 6)F:proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:regulation of photosynthesis, seed development, embryo sac development, ovule development, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast, chloroplast stroma;BOAMFPO.I.C.G.H.G.
22.299.679.4At3g53900824557uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putativeF:uracil phosphoribosyltransferase activity;P:uracil salvage, nucleoside metabolic process;C:chloroplast;BOFMPAO.I.C.G.H.G.
21.699.622.5At4g30825829206pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:cell cycle;C:nucleus;POMFBAO.I.C.G.H.G.
21.399.672.3At4g13670827001PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)F:unfolded protein binding, heat shock protein binding;P:protein folding, metabolic process;C:plastid chromosome, chloroplast thylakoid membrane, chloroplast, nucleoid, chloroplast envelope;BOMPFAVO.I.C.G.H.G.
19.799.6278.3At1g70370843373BURP domain-containing protein / polygalacturonase, putativeF:polygalacturonase activity;P:biological_process unknown;C:endomembrane system;OBMPFAVO.I.C.G.H.G.
19.199.6207.1At3g45970823740ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1)member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
17.099.5283.9At3g13470820549chaperonin, putativeF:protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:in 7 components;BOMFPAVO.I.C.G.H.G.
16.799.523.7At3g57180824885GTP bindingF:GTP binding;P:biological_process unknown;C:chloroplast;MOBFPVAO.I.C.G.H.G.
15.799.5109.2At3g53560824524chloroplast lumen common family proteinF:binding;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOMPAFO.I.C.G.H.G.
14.599.418.5At2g15820816078OTP51 (ORGANELLE TRANSCRIPT PROCESSING 51)Encodes a protein that promotes splicing of type II introns. otp51 mutants fail to splice intron 2 of plastid ycf3 transcripts, a factor required for the assembly of Photosystem I. Therefore, homozygous otp51 mutants have profound photosynthetic defects and can only survive in sucrose-supplemented in vitro cultures under low light conditions. OTP51 may also be involved in splicing several other transcripts and precursor forms of the trnL, trnG, trnI, and trnA transcripts also accumulate in otp51 mutants. Although OTP51 shares some homology with DNA endonucleases, it lacks key catalytic residues suggesting that it does not participate in DNA cleavage.O.I.C.G.H.G.
14.099.445.9At1g31690840056amine oxidase/ copper ion binding / quinone bindingF:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPAO.I.C.G.H.G.
13.899.496.2At1g24170839030LGT9Encodes a protein with putative galacturonosyltransferase activity.O.I.C.G.H.G.
13.799.461.8At1g61180842411disease resistance protein (CC-NBS-LRR class), putativeF:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:plasma membrane;PMBOFAO.I.C.G.H.G.
13.599.453.5At3g52750824441FTSZ2-2Nuclear gene that encodes a plastidial division protein (FtsZ2-2).O.I.C.G.H.G.
13.199.4111.5At4g12060826814Clp amino terminal domain-containing proteinF:protein binding, ATP binding;P:protein metabolic process;C:plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope;BOPO.I.C.G.H.G.
12.999.310.6At4g37380829892pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBO.I.C.G.H.G.
12.699.368.7At3g59780825147-F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPVO.I.C.G.H.G.
12.599.325.2At1g70070843343EMB25 (EMBRYO DEFECTIVE 25)Allelic to ISE2(increased size exclusion limit of plasmodesmata 2). Mutants maintain dilated plasmodesmata at the embryonic torpedo stage.O.I.C.G.H.G.
12.499.374.9At3g54090824576pfkB-type carbohydrate kinase family proteinF:kinase activity;P:acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:nucleus, chloroplast, nucleoid, cytoplasm;BOPAMFO.I.C.G.H.G.
11.999.3229.5At1g17220838293FUG1 (fu-gaeri1)Encodes a chloroplast localized protein with similarity to translation initiation factor 2. Can complement loss of INFB in E.coli suggesting FUG1 does function as a translation initiation factor in vivo. Identified as a suppressor of the leaf variegation mutant var2-6. Suppression is only seen in hypomorphs as complete loss of function alleles are embryo lethal.O.I.C.G.H.G.
11.899.3123.5At1g33040840199NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVAO.I.C.G.H.G.
11.799.337.2At5g54630835552zinc finger protein-relatedF:transcription factor activity;P:regulation of transcription;C:intracellular;PFMOO.I.C.G.H.G.
11.599.3108.3At3g24430822033HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101)encodes a MRP-like protein with a nucleotide-binding domain.O.I.C.G.H.G.
11.599.342.4At5g05250830407unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
11.499.3379.8At1g55490841996CPN60B (CHAPERONIN 60 BETA)encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.O.I.C.G.H.G.
11.299.229.1At1g20560838644AAE1 (ACYL ACTIVATING ENZYME 1)F:AMP binding;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
11.099.211.0At2g23950816928leucine-rich repeat family protein / protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
10.799.289.2At1g51805841607leucine-rich repeat protein kinase, putativeF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
10.799.285.0At3g16000820845MFP1 (MAR BINDING FILAMENT-LIKE PROTEIN 1)encodes a DNA-binding protein that binds to plastid DNA non-specifically and is associated with nucleoids and thylakoid membranes. The expression of the gene is correlated with the development of thylakoid membranes.O.I.C.G.H.G.
10.699.237.3At3g16290820876EMB2083 (embryo defective 2083)F:in 8 functions;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAVO.I.C.G.H.G.
10.599.2135.0At1g08520837374CHLDF:magnesium chelatase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:chlorophyll biosynthetic process;C:magnesium chelatase complex, chloroplast;MOBFPVAO.I.C.G.H.G.
10.599.260.7At2g42320818833nucleolar protein gar2-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVAO.I.C.G.H.G.
10.499.2153.3At3g51820824345G4Encodes a protein with chlorophyll synthase activity. This enzyme has been shown to perform the esterification of chlorophyllide (a and b), the last step of chlorophyll biosynthesis. Although it can use either geranylgeranyl pyrophosphate (GGPP) or phytyl pyrophosphate (PhyPP) as substrates, the esterification reaction was faster with GGPP than with PhyPP.O.I.C.G.H.G.
10.499.233.6At2g37400818316chloroplast lumen common family proteinF:binding;P:biological_process unknown;C:mitochondrion, chloroplast thylakoid lumen, plastid, chloroplast envelope;BOAMPFO.I.C.G.H.G.
10.199.233.7At1g69730843309protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system, integral to membrane;MPOBFVAO.I.C.G.H.G.
10.099.218.1At3g16010820846pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAO.I.C.G.H.G.
9.899.195.9At5g44650834494unknown proteinF:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;PMOO.I.C.G.H.G.
9.899.131.8At3g49140824075-F:unknown;P:unknown;C:unknown;PBMOFVAO.I.C.G.H.G.
9.899.131.1At4g19985827743GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:N-terminal protein myristoylation, metabolic process;C:unknown;BPOAO.I.C.G.H.G.
9.799.160.2At1g32500840144ATNAP6 (NON-INTRINSIC ABC PROTEIN 6)Encodes a member of a heterogenous group of non-intrinsic ATP-binding cassette (ABC) proteins. Members of this group bear no close resemblance to each other nor to representatives of specific ABC protein subfamilies from other organisms. This grouping is arbitrary and will likely change upon acquisition of further data.O.I.C.G.H.G.
9.799.137.7At1g05150839312calcium-binding EF hand family proteinF:binding, zinc ion binding, calcium ion binding;P:biological_process unknown;C:plasma membrane;BOMAPFO.I.C.G.H.G.
9.399.143.3At3g20320821576TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)Encodes a permease-like component of an ABC transporter involved in lipid transfer from ER to chloroplast. A phosphatidic acid-binding protein with a predicted mycobacterial cell entry domain. It is tethered to the inner chloroplast envelope membrane facing the outer envelope membrane. Presumed bacterial orthologs of TGD1 and TGD2 in Gram-negative bacteria are typically organized in transcriptional units, suggesting their involvement in a common biological process.O.I.C.G.H.G.
9.399.127.0At4g25870828693unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POBO.I.C.G.H.G.
9.199.1187.2At2g23590816891MES8 (METHYL ESTERASE 8)Encodes a protein shown to have carboxylesterase activity in vitro. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
9.199.1173.4At1g03630839009POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE)Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent.O.I.C.G.H.G.
8.999.065.6At5g22620832325phosphoglycerate/bisphosphoglycerate mutase family proteinF:catalytic activity;P:metabolic process;C:chloroplast;BOMFPAO.I.C.G.H.G.
8.999.046.4At5g66210836753CPK28member of Calcium Dependent Protein KinaseO.I.C.G.H.G.
8.899.0189.4At5g35360833497CAC2Encodes biotin carboxylase subunit (CAC2).O.I.C.G.H.G.
8.899.074.7At5g44680834497methyladenine glycosylase family proteinF:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMFO.I.C.G.H.G.
8.899.045.9At5g36210833618serine-type peptidaseF:serine-type peptidase activity;P:proteolysis;C:chloroplast;BOMFAPO.I.C.G.H.G.
8.899.040.9At2g34640818029PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12)Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.O.I.C.G.H.G.
8.899.029.4At1g11870837734SRS (SERYL-TRNA SYNTHETASE)Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.O.I.C.G.H.G.
8.799.0188.4At5g09650830824AtPPa6 (Arabidopsis thaliana pyrophosphorylase 6)Encodes a protein with inorganic pyrophosphatase activity.O.I.C.G.H.G.
8.699.039.5At3g59040825073pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBAO.I.C.G.H.G.
8.699.09.1At1g69550843291disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBOMFO.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage