CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM157388

Assay name Sakakibara_1-7_DMSO-treatment-wild_Rep1_ATH1

GSE experiment GSE6832: Cytokinin treatment on aerial parts of seedlings

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
37.8 99.8 29.7 At4g30825 829206 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:cell cycle;C:nucleus;POMFBA O.I. C.G. H.G.
27.6 99.7 101.6 At3g59780 825147 - F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPV O.I. C.G. H.G.
20.6 99.6 76.6 At3g53900 824557 uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative F:uracil phosphoribosyltransferase activity;P:uracil salvage, nucleoside metabolic process;C:chloroplast;BOFMPA O.I. C.G. H.G.
19.2 99.6 113.6 At1g24170 839030 LGT9 Encodes a protein with putative galacturonosyltransferase activity. O.I. C.G. H.G.
18.6 99.5 84.6 At5g52520 835328 OVA6 (OVULE ABORTION 6) F:proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:regulation of photosynthesis, seed development, embryo sac development, ovule development, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast, chloroplast stroma;BOAMFP O.I. C.G. H.G.
17.6 99.5 288.8 At3g13470 820549 chaperonin, putative F:protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:in 7 components;BOMFPAV O.I. C.G. H.G.
16.9 99.5 112.0 At1g51805 841607 leucine-rich repeat protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
16.8 99.5 59.8 At3g52750 824441 FTSZ2-2 Nuclear gene that encodes a plastidial division protein (FtsZ2-2). O.I. C.G. H.G.
16.3 99.5 111.2 At3g53560 824524 chloroplast lumen common family protein F:binding;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOMPAF O.I. C.G. H.G.
15.2 99.4 41.4 At1g69730 843309 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system, integral to membrane;MPOBFVA O.I. C.G. H.G.
14.9 99.4 47.2 At1g31690 840056 amine oxidase/ copper ion binding / quinone binding F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA O.I. C.G. H.G.
14.7 99.4 240.0 At1g70370 843373 BURP domain-containing protein / polygalacturonase, putative F:polygalacturonase activity;P:biological_process unknown;C:endomembrane system;OBMPFAV O.I. C.G. H.G.
14.7 99.4 96.6 At5g44680 834497 methyladenine glycosylase family protein F:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMF O.I. C.G. H.G.
14.4 99.4 19.1 At1g62850 842585 - - O.I. C.G. H.G.
13.8 99.4 133.9 At1g33040 840199 NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA O.I. C.G. H.G.
13.6 99.4 32.9 At5g07240 830615 IQD24 (IQ-domain 24) F:calmodulin binding;P:biological_process unknown;C:unknown;PMOB O.I. C.G. H.G.
13.4 99.4 77.9 At3g54090 824576 pfkB-type carbohydrate kinase family protein F:kinase activity;P:acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:nucleus, chloroplast, nucleoid, cytoplasm;BOPAMF O.I. C.G. H.G.
13.3 99.4 116.7 At3g24430 822033 HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101) encodes a MRP-like protein with a nucleotide-binding domain. O.I. C.G. H.G.
13.3 99.4 68.7 At4g19530 827695 disease resistance protein (TIR-NBS-LRR class), putative Encodes a TIR-NB-LRR resistance protein. Transient expression in tobacco induces cell death. O.I. C.G. H.G.
13.3 99.4 32.4 At4g25870 828693 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POB O.I. C.G. H.G.
13.0 99.4 44.3 At1g36390 840545 co-chaperone grpE family protein F:protein binding, protein homodimerization activity, chaperone binding, adenyl-nucleotide exchange factor activity;P:protein folding;C:chloroplast, chloroplast stroma;BOMPFA O.I. C.G. H.G.
13.0 99.4 10.7 At4g37380 829892 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFB O.I. C.G. H.G.
12.9 99.3 238.4 At1g17220 838293 FUG1 (fu-gaeri1) Encodes a chloroplast localized protein with similarity to translation initiation factor 2. Can complement loss of INFB in E.coli suggesting FUG1 does function as a translation initiation factor in vivo. Identified as a suppressor of the leaf variegation mutant var2-6. Suppression is only seen in hypomorphs as complete loss of function alleles are embryo lethal. O.I. C.G. H.G.
12.9 99.3 170.6 At3g45970 823740 ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1) member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
12.8 99.3 221.9 At2g23590 816891 MES8 (METHYL ESTERASE 8) Encodes a protein shown to have carboxylesterase activity in vitro. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
12.6 99.3 92.3 At3g16000 820845 MFP1 (MAR BINDING FILAMENT-LIKE PROTEIN 1) encodes a DNA-binding protein that binds to plastid DNA non-specifically and is associated with nucleoids and thylakoid membranes. The expression of the gene is correlated with the development of thylakoid membranes. O.I. C.G. H.G.
12.5 99.3 94.7 At4g37550 829910 formamidase, putative / formamide amidohydrolase, putative F:formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;P:metabolic process;C:vacuole;BOFAP O.I. C.G. H.G.
12.4 99.3 38.4 At5g54630 835552 zinc finger protein-related F:transcription factor activity;P:regulation of transcription;C:intracellular;PFMO O.I. C.G. H.G.
12.3 99.3 104.0 At2g06530 815211 VPS2.1 F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOBAV O.I. C.G. H.G.
12.2 99.3 165.8 At3g51820 824345 G4 Encodes a protein with chlorophyll synthase activity. This enzyme has been shown to perform the esterification of chlorophyllide (a and b), the last step of chlorophyll biosynthesis. Although it can use either geranylgeranyl pyrophosphate (GGPP) or phytyl pyrophosphate (PhyPP) as substrates, the esterification reaction was faster with GGPP than with PhyPP. O.I. C.G. H.G.
12.2 99.3 65.3 At2g42320 818833 nucleolar protein gar2-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA O.I. C.G. H.G.
12.2 99.3 10.8 At1g69550 843291 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBOMF O.I. C.G. H.G.
12.1 99.3 222.4 At5g09650 830824 AtPPa6 (Arabidopsis thaliana pyrophosphorylase 6) Encodes a protein with inorganic pyrophosphatase activity. O.I. C.G. H.G.
11.9 99.3 41.9 At1g05150 839312 calcium-binding EF hand family protein F:binding, zinc ion binding, calcium ion binding;P:biological_process unknown;C:plasma membrane;BOMAPF O.I. C.G. H.G.
11.8 99.3 39.3 At3g16290 820876 EMB2083 (embryo defective 2083) F:in 8 functions;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAV O.I. C.G. H.G.
11.8 99.3 16.7 At2g15820 816078 OTP51 (ORGANELLE TRANSCRIPT PROCESSING 51) Encodes a protein that promotes splicing of type II introns. otp51 mutants fail to splice intron 2 of plastid ycf3 transcripts, a factor required for the assembly of Photosystem I. Therefore, homozygous otp51 mutants have profound photosynthetic defects and can only survive in sucrose-supplemented in vitro cultures under low light conditions. OTP51 may also be involved in splicing several other transcripts and precursor forms of the trnL, trnG, trnI, and trnA transcripts also accumulate in otp51 mutants. Although OTP51 shares some homology with DNA endonucleases, it lacks key catalytic residues suggesting that it does not participate in DNA cleavage. O.I. C.G. H.G.
11.6 99.3 284.4 At5g23060 832370 CaS (Calcium sensing receptor) F:unknown;P:unknown;C:thylakoid, mitochondrion, chloroplast thylakoid membrane, chloroplast;PBOFM O.I. C.G. H.G.
11.5 99.3 381.0 At1g55490 841996 CPN60B (CHAPERONIN 60 BETA) encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro. O.I. C.G. H.G.
11.5 99.3 25.6 At3g03770 821164 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
11.5 99.3 21.8 At5g63060 836426 transporter F:transporter activity;P:transport;C:chloroplast;MPFO O.I. C.G. H.G.
11.3 99.3 228.7 At1g23740 838984 oxidoreductase, zinc-binding dehydrogenase family protein F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to cold;C:in 6 components;BOFMPAV O.I. C.G. H.G.
11.3 99.3 24.0 At1g70070 843343 EMB25 (EMBRYO DEFECTIVE 25) Allelic to ISE2(increased size exclusion limit of plasmodesmata 2). Mutants maintain dilated plasmodesmata at the embryonic torpedo stage. O.I. C.G. H.G.
11.2 99.2 139.5 At1g08520 837374 CHLD F:magnesium chelatase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:chlorophyll biosynthetic process;C:magnesium chelatase complex, chloroplast;MOBFPVA O.I. C.G. H.G.
11.0 99.2 52.1 At4g13670 827001 PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5) F:unfolded protein binding, heat shock protein binding;P:protein folding, metabolic process;C:plastid chromosome, chloroplast thylakoid membrane, chloroplast, nucleoid, chloroplast envelope;BOMPFAV O.I. C.G. H.G.
10.9 99.2 19.1 At3g57180 824885 GTP binding F:GTP binding;P:biological_process unknown;C:chloroplast;MOBFPVA O.I. C.G. H.G.
10.8 99.2 100.5 At5g44650 834494 unknown protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;PMO O.I. C.G. H.G.
10.7 99.2 104.4 At5g47435 834791 formyltetrahydrofolate deformylase, putative encodes one of the two putative formyltetrahydrofolate deformylase. Located in the mitochondrion. Involved in photorespiratory tetrahydrofolate cycle. O.I. C.G. H.G.
10.7 99.2 69.5 At2g21860 816722 violaxanthin de-epoxidase-related F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
10.7 99.2 33.2 At3g49140 824075 - F:unknown;P:unknown;C:unknown;PBMOFVA O.I. C.G. H.G.
10.7 99.2 20.5 At3g53700 824537 MEE40 (maternal effect embryo arrest 40) F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;POMFBA O.I. C.G. H.G.
10.4 99.2 45.9 At3g20320 821576 TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2) Encodes a permease-like component of an ABC transporter involved in lipid transfer from ER to chloroplast. A phosphatidic acid-binding protein with a predicted mycobacterial cell entry domain. It is tethered to the inner chloroplast envelope membrane facing the outer envelope membrane. Presumed bacterial orthologs of TGD1 and TGD2 in Gram-negative bacteria are typically organized in transcriptional units, suggesting their involvement in a common biological process. O.I. C.G. H.G.
10.4 99.2 32.0 At4g19985 827743 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:N-terminal protein myristoylation, metabolic process;C:unknown;BPOA O.I. C.G. H.G.
10.2 99.2 70.2 At5g22620 832325 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:chloroplast;BOMFPA O.I. C.G. H.G.
10.1 99.2 57.0 At1g15730 838142 PRLI-interacting factor L, putative F:unknown;P:unknown;C:unknown;OBMFPAV O.I. C.G. H.G.
10.0 99.2 52.8 At1g61180 842411 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:plasma membrane;PMBOFA O.I. C.G. H.G.
9.9 99.1 180.0 At1g03630 839009 POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE) Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent. O.I. C.G. H.G.
9.9 99.1 102.8 At5g38520 833840 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:chloroplast, chloroplast envelope;BOMPFAV O.I. C.G. H.G.
9.9 99.1 18.0 At3g16010 820846 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFBA O.I. C.G. H.G.
9.8 99.1 102.0 At2g41680 818766 NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C) Encodes a NADPH thioredoxin reductase involved in chloroplast protection against oxidative damage. O.I. C.G. H.G.
9.7 99.1 27.0 At1g20560 838644 AAE1 (ACYL ACTIVATING ENZYME 1) F:AMP binding;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
9.6 99.1 122.6 At2g32480 817809 membrane-associated zinc metalloprotease, putative F:protein binding, metalloendopeptidase activity;P:proteolysis;C:chloroplast, plastid;BOPAM O.I. C.G. H.G.
9.6 99.1 48.4 At5g66210 836753 CPK28 member of Calcium Dependent Protein Kinase O.I. C.G. H.G.
9.5 99.1 121.9 At1g44000 841000 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO O.I. C.G. H.G.
9.4 99.1 276.4 At4g12720 826884 NUDT7 Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death. O.I. C.G. H.G.
9.4 99.1 47.3 At1g31860 840076 AT-IE encodes a bifunctional protein that has phosphoribosyl-ATP pyrophosphohydrolase (PRA-PH) and phosphoribosyl-AMP cyclohydrolase (PRA-CH) activities. O.I. C.G. H.G.
9.2 99.1 257.6 At3g15850 820828 FAD5 (FATTY ACID DESATURASE 5) Chloroplastic enzyme responsible for the synthesis of 16:1 fatty acids from galactolipids and sulpholipids. Uses ferredoxin as electron donor. O.I. C.G. H.G.
9.1 99.1 166.6 At1g62180 842514 APR2 (5'ADENYLYLPHOSPHOSULFATE REDUCTASE 2) encodes a adenosine 5'-phosphosulfate reductase, involved in sulfate assimilation. Is a major effect locus for natural variation of shoot sulfate content in Arabidopsis. O.I. C.G. H.G.
9.1 99.1 73.3 At1g19835 838571 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV O.I. C.G. H.G.
9.1 99.1 54.1 At5g13410 831182 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOPMFA O.I. C.G. H.G.
9.1 99.1 31.7 At3g47490 823903 HNH endonuclease domain-containing protein F:nucleic acid binding, endonuclease activity;P:biological_process unknown;C:cellular_component unknown;POB O.I. C.G. H.G.
9.0 99.1 110.6 At1g13110 837868 CYP71B7 member of CYP71B O.I. C.G. H.G.
9.0 99.1 44.9 At5g48220 834875 indole-3-glycerol phosphate synthase, putative F:indole-3-glycerol-phosphate synthase activity, catalytic activity;P:metabolic process, tryptophan metabolic process;C:chloroplast, chloroplast stroma;BOAFP O.I. C.G. H.G.
8.9 99.0 46.1 At5g36210 833618 serine-type peptidase F:serine-type peptidase activity;P:proteolysis;C:chloroplast;BOMFAP O.I. C.G. H.G.
8.9 99.0 41.9 At3g52940 824460 FK (FACKEL) Encodes a sterol C-14 reductase required for cell division and expansion and is involved in proper organization of the embryo. O.I. C.G. H.G.
8.9 99.0 29.8 At4g04540 825785 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
8.8 99.0 77.4 At1g31800 840067 CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3) Encodes a protein with β-ring carotenoid hydroxylase activity. O.I. C.G. H.G.
8.8 99.0 52.4 At5g08540 830754 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;PO O.I. C.G. H.G.
8.8 99.0 35.4 At2g01220 814650 nucleotidyltransferase F:nucleotidyltransferase activity;P:biosynthetic process;C:chloroplast envelope;OPBAF O.I. C.G. H.G.
8.7 99.0 112.8 At4g21870 828276 26.5 kDa class P-related heat shock protein (HSP26.5-P) F:unknown;P:response to heat;C:cellular_component unknown;PBOFA O.I. C.G. H.G.
8.7 99.0 46.0 At3g23410 821922 alcohol oxidase-related Encodes a fatty alcohol oxidase. O.I. C.G. H.G.
8.7 99.0 39.3 At1g07650 837278 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
8.7 99.0 32.9 At2g33530 817918 scpl46 (serine carboxypeptidase-like 46) F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOB O.I. C.G. H.G.
8.6 99.0 136.0 At1g43560 840939 Aty2 (Arabidopsis thioredoxin y2) F:electron carrier activity, protein disulfide oxidoreductase activity;P:glycerol ether metabolic process, cell redox homeostasis;C:chloroplast stroma, chloroplast;BOMPFAV O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
37.8	99.8	29.7	At4g30825	829206	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:cell cycle;C:nucleus;POMFBA	O.I.	C.G.	H.G.
27.6	99.7	101.6	At3g59780	825147	-	F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPV	O.I.	C.G.	H.G.
20.6	99.6	76.6	At3g53900	824557	uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative	F:uracil phosphoribosyltransferase activity;P:uracil salvage, nucleoside metabolic process;C:chloroplast;BOFMPA	O.I.	C.G.	H.G.
19.2	99.6	113.6	At1g24170	839030	LGT9	Encodes a protein with putative galacturonosyltransferase activity.	O.I.	C.G.	H.G.
18.6	99.5	84.6	At5g52520	835328	OVA6 (OVULE ABORTION 6)	F:proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:regulation of photosynthesis, seed development, embryo sac development, ovule development, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast, chloroplast stroma;BOAMFP	O.I.	C.G.	H.G.
17.6	99.5	288.8	At3g13470	820549	chaperonin, putative	F:protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:in 7 components;BOMFPAV	O.I.	C.G.	H.G.
16.9	99.5	112.0	At1g51805	841607	leucine-rich repeat protein kinase, putative	F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
16.8	99.5	59.8	At3g52750	824441	FTSZ2-2	Nuclear gene that encodes a plastidial division protein (FtsZ2-2).	O.I.	C.G.	H.G.
16.3	99.5	111.2	At3g53560	824524	chloroplast lumen common family protein	F:binding;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOMPAF	O.I.	C.G.	H.G.
15.2	99.4	41.4	At1g69730	843309	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system, integral to membrane;MPOBFVA	O.I.	C.G.	H.G.
14.9	99.4	47.2	At1g31690	840056	amine oxidase/ copper ion binding / quinone binding	F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA	O.I.	C.G.	H.G.
14.7	99.4	240.0	At1g70370	843373	BURP domain-containing protein / polygalacturonase, putative	F:polygalacturonase activity;P:biological_process unknown;C:endomembrane system;OBMPFAV	O.I.	C.G.	H.G.
14.7	99.4	96.6	At5g44680	834497	methyladenine glycosylase family protein	F:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMF	O.I.	C.G.	H.G.
14.4	99.4	19.1	At1g62850	842585	-	-	O.I.	C.G.	H.G.
13.8	99.4	133.9	At1g33040	840199	NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA	O.I.	C.G.	H.G.
13.6	99.4	32.9	At5g07240	830615	IQD24 (IQ-domain 24)	F:calmodulin binding;P:biological_process unknown;C:unknown;PMOB	O.I.	C.G.	H.G.
13.4	99.4	77.9	At3g54090	824576	pfkB-type carbohydrate kinase family protein	F:kinase activity;P:acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:nucleus, chloroplast, nucleoid, cytoplasm;BOPAMF	O.I.	C.G.	H.G.
13.3	99.4	116.7	At3g24430	822033	HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101)	encodes a MRP-like protein with a nucleotide-binding domain.	O.I.	C.G.	H.G.
13.3	99.4	68.7	At4g19530	827695	disease resistance protein (TIR-NBS-LRR class), putative	Encodes a TIR-NB-LRR resistance protein. Transient expression in tobacco induces cell death.	O.I.	C.G.	H.G.
13.3	99.4	32.4	At4g25870	828693	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;POB	O.I.	C.G.	H.G.
13.0	99.4	44.3	At1g36390	840545	co-chaperone grpE family protein	F:protein binding, protein homodimerization activity, chaperone binding, adenyl-nucleotide exchange factor activity;P:protein folding;C:chloroplast, chloroplast stroma;BOMPFA	O.I.	C.G.	H.G.
13.0	99.4	10.7	At4g37380	829892	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POMFB	O.I.	C.G.	H.G.
12.9	99.3	238.4	At1g17220	838293	FUG1 (fu-gaeri1)	Encodes a chloroplast localized protein with similarity to translation initiation factor 2. Can complement loss of INFB in E.coli suggesting FUG1 does function as a translation initiation factor in vivo. Identified as a suppressor of the leaf variegation mutant var2-6. Suppression is only seen in hypomorphs as complete loss of function alleles are embryo lethal.	O.I.	C.G.	H.G.
12.9	99.3	170.6	At3g45970	823740	ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1)	member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
12.8	99.3	221.9	At2g23590	816891	MES8 (METHYL ESTERASE 8)	Encodes a protein shown to have carboxylesterase activity in vitro. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
12.6	99.3	92.3	At3g16000	820845	MFP1 (MAR BINDING FILAMENT-LIKE PROTEIN 1)	encodes a DNA-binding protein that binds to plastid DNA non-specifically and is associated with nucleoids and thylakoid membranes. The expression of the gene is correlated with the development of thylakoid membranes.	O.I.	C.G.	H.G.
12.5	99.3	94.7	At4g37550	829910	formamidase, putative / formamide amidohydrolase, putative	F:formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;P:metabolic process;C:vacuole;BOFAP	O.I.	C.G.	H.G.
12.4	99.3	38.4	At5g54630	835552	zinc finger protein-related	F:transcription factor activity;P:regulation of transcription;C:intracellular;PFMO	O.I.	C.G.	H.G.
12.3	99.3	104.0	At2g06530	815211	VPS2.1	F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOBAV	O.I.	C.G.	H.G.
12.2	99.3	165.8	At3g51820	824345	G4	Encodes a protein with chlorophyll synthase activity. This enzyme has been shown to perform the esterification of chlorophyllide (a and b), the last step of chlorophyll biosynthesis. Although it can use either geranylgeranyl pyrophosphate (GGPP) or phytyl pyrophosphate (PhyPP) as substrates, the esterification reaction was faster with GGPP than with PhyPP.	O.I.	C.G.	H.G.
12.2	99.3	65.3	At2g42320	818833	nucleolar protein gar2-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA	O.I.	C.G.	H.G.
12.2	99.3	10.8	At1g69550	843291	disease resistance protein (TIR-NBS class), putative	F:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBOMF	O.I.	C.G.	H.G.
12.1	99.3	222.4	At5g09650	830824	AtPPa6 (Arabidopsis thaliana pyrophosphorylase 6)	Encodes a protein with inorganic pyrophosphatase activity.	O.I.	C.G.	H.G.
11.9	99.3	41.9	At1g05150	839312	calcium-binding EF hand family protein	F:binding, zinc ion binding, calcium ion binding;P:biological_process unknown;C:plasma membrane;BOMAPF	O.I.	C.G.	H.G.
11.8	99.3	39.3	At3g16290	820876	EMB2083 (embryo defective 2083)	F:in 8 functions;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAV	O.I.	C.G.	H.G.
11.8	99.3	16.7	At2g15820	816078	OTP51 (ORGANELLE TRANSCRIPT PROCESSING 51)	Encodes a protein that promotes splicing of type II introns. otp51 mutants fail to splice intron 2 of plastid ycf3 transcripts, a factor required for the assembly of Photosystem I. Therefore, homozygous otp51 mutants have profound photosynthetic defects and can only survive in sucrose-supplemented in vitro cultures under low light conditions. OTP51 may also be involved in splicing several other transcripts and precursor forms of the trnL, trnG, trnI, and trnA transcripts also accumulate in otp51 mutants. Although OTP51 shares some homology with DNA endonucleases, it lacks key catalytic residues suggesting that it does not participate in DNA cleavage.	O.I.	C.G.	H.G.
11.6	99.3	284.4	At5g23060	832370	CaS (Calcium sensing receptor)	F:unknown;P:unknown;C:thylakoid, mitochondrion, chloroplast thylakoid membrane, chloroplast;PBOFM	O.I.	C.G.	H.G.
11.5	99.3	381.0	At1g55490	841996	CPN60B (CHAPERONIN 60 BETA)	encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.	O.I.	C.G.	H.G.
11.5	99.3	25.6	At3g03770	821164	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
11.5	99.3	21.8	At5g63060	836426	transporter	F:transporter activity;P:transport;C:chloroplast;MPFO	O.I.	C.G.	H.G.
11.3	99.3	228.7	At1g23740	838984	oxidoreductase, zinc-binding dehydrogenase family protein	F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to cold;C:in 6 components;BOFMPAV	O.I.	C.G.	H.G.
11.3	99.3	24.0	At1g70070	843343	EMB25 (EMBRYO DEFECTIVE 25)	Allelic to ISE2(increased size exclusion limit of plasmodesmata 2). Mutants maintain dilated plasmodesmata at the embryonic torpedo stage.	O.I.	C.G.	H.G.
11.2	99.2	139.5	At1g08520	837374	CHLD	F:magnesium chelatase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:chlorophyll biosynthetic process;C:magnesium chelatase complex, chloroplast;MOBFPVA	O.I.	C.G.	H.G.
11.0	99.2	52.1	At4g13670	827001	PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)	F:unfolded protein binding, heat shock protein binding;P:protein folding, metabolic process;C:plastid chromosome, chloroplast thylakoid membrane, chloroplast, nucleoid, chloroplast envelope;BOMPFAV	O.I.	C.G.	H.G.
10.9	99.2	19.1	At3g57180	824885	GTP binding	F:GTP binding;P:biological_process unknown;C:chloroplast;MOBFPVA	O.I.	C.G.	H.G.
10.8	99.2	100.5	At5g44650	834494	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;PMO	O.I.	C.G.	H.G.
10.7	99.2	104.4	At5g47435	834791	formyltetrahydrofolate deformylase, putative	encodes one of the two putative formyltetrahydrofolate deformylase. Located in the mitochondrion. Involved in photorespiratory tetrahydrofolate cycle.	O.I.	C.G.	H.G.
10.7	99.2	69.5	At2g21860	816722	violaxanthin de-epoxidase-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
10.7	99.2	33.2	At3g49140	824075	-	F:unknown;P:unknown;C:unknown;PBMOFVA	O.I.	C.G.	H.G.
10.7	99.2	20.5	At3g53700	824537	MEE40 (maternal effect embryo arrest 40)	F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;POMFBA	O.I.	C.G.	H.G.
10.4	99.2	45.9	At3g20320	821576	TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)	Encodes a permease-like component of an ABC transporter involved in lipid transfer from ER to chloroplast. A phosphatidic acid-binding protein with a predicted mycobacterial cell entry domain. It is tethered to the inner chloroplast envelope membrane facing the outer envelope membrane. Presumed bacterial orthologs of TGD1 and TGD2 in Gram-negative bacteria are typically organized in transcriptional units, suggesting their involvement in a common biological process.	O.I.	C.G.	H.G.
10.4	99.2	32.0	At4g19985	827743	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:N-terminal protein myristoylation, metabolic process;C:unknown;BPOA	O.I.	C.G.	H.G.
10.2	99.2	70.2	At5g22620	832325	phosphoglycerate/bisphosphoglycerate mutase family protein	F:catalytic activity;P:metabolic process;C:chloroplast;BOMFPA	O.I.	C.G.	H.G.
10.1	99.2	57.0	At1g15730	838142	PRLI-interacting factor L, putative	F:unknown;P:unknown;C:unknown;OBMFPAV	O.I.	C.G.	H.G.
10.0	99.2	52.8	At1g61180	842411	disease resistance protein (CC-NBS-LRR class), putative	F:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:plasma membrane;PMBOFA	O.I.	C.G.	H.G.
9.9	99.1	180.0	At1g03630	839009	POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE)	Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent.	O.I.	C.G.	H.G.
9.9	99.1	102.8	At5g38520	833840	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:chloroplast, chloroplast envelope;BOMPFAV	O.I.	C.G.	H.G.
9.9	99.1	18.0	At3g16010	820846	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POMFBA	O.I.	C.G.	H.G.
9.8	99.1	102.0	At2g41680	818766	NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C)	Encodes a NADPH thioredoxin reductase involved in chloroplast protection against oxidative damage.	O.I.	C.G.	H.G.
9.7	99.1	27.0	At1g20560	838644	AAE1 (ACYL ACTIVATING ENZYME 1)	F:AMP binding;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
9.6	99.1	122.6	At2g32480	817809	membrane-associated zinc metalloprotease, putative	F:protein binding, metalloendopeptidase activity;P:proteolysis;C:chloroplast, plastid;BOPAM	O.I.	C.G.	H.G.
9.6	99.1	48.4	At5g66210	836753	CPK28	member of Calcium Dependent Protein Kinase	O.I.	C.G.	H.G.
9.5	99.1	121.9	At1g44000	841000	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO	O.I.	C.G.	H.G.
9.4	99.1	276.4	At4g12720	826884	NUDT7	Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death.	O.I.	C.G.	H.G.
9.4	99.1	47.3	At1g31860	840076	AT-IE	encodes a bifunctional protein that has phosphoribosyl-ATP pyrophosphohydrolase (PRA-PH) and phosphoribosyl-AMP cyclohydrolase (PRA-CH) activities.	O.I.	C.G.	H.G.
9.2	99.1	257.6	At3g15850	820828	FAD5 (FATTY ACID DESATURASE 5)	Chloroplastic enzyme responsible for the synthesis of 16:1 fatty acids from galactolipids and sulpholipids. Uses ferredoxin as electron donor.	O.I.	C.G.	H.G.
9.1	99.1	166.6	At1g62180	842514	APR2 (5'ADENYLYLPHOSPHOSULFATE REDUCTASE 2)	encodes a adenosine 5'-phosphosulfate reductase, involved in sulfate assimilation. Is a major effect locus for natural variation of shoot sulfate content in Arabidopsis.	O.I.	C.G.	H.G.
9.1	99.1	73.3	At1g19835	838571	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV	O.I.	C.G.	H.G.
9.1	99.1	54.1	At5g13410	831182	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOPMFA	O.I.	C.G.	H.G.
9.1	99.1	31.7	At3g47490	823903	HNH endonuclease domain-containing protein	F:nucleic acid binding, endonuclease activity;P:biological_process unknown;C:cellular_component unknown;POB	O.I.	C.G.	H.G.
9.0	99.1	110.6	At1g13110	837868	CYP71B7	member of CYP71B	O.I.	C.G.	H.G.
9.0	99.1	44.9	At5g48220	834875	indole-3-glycerol phosphate synthase, putative	F:indole-3-glycerol-phosphate synthase activity, catalytic activity;P:metabolic process, tryptophan metabolic process;C:chloroplast, chloroplast stroma;BOAFP	O.I.	C.G.	H.G.
8.9	99.0	46.1	At5g36210	833618	serine-type peptidase	F:serine-type peptidase activity;P:proteolysis;C:chloroplast;BOMFAP	O.I.	C.G.	H.G.
8.9	99.0	41.9	At3g52940	824460	FK (FACKEL)	Encodes a sterol C-14 reductase required for cell division and expansion and is involved in proper organization of the embryo.	O.I.	C.G.	H.G.
8.9	99.0	29.8	At4g04540	825785	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
8.8	99.0	77.4	At1g31800	840067	CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3)	Encodes a protein with β-ring carotenoid hydroxylase activity.	O.I.	C.G.	H.G.
8.8	99.0	52.4	At5g08540	830754	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;PO	O.I.	C.G.	H.G.
8.8	99.0	35.4	At2g01220	814650	nucleotidyltransferase	F:nucleotidyltransferase activity;P:biosynthetic process;C:chloroplast envelope;OPBAF	O.I.	C.G.	H.G.
8.7	99.0	112.8	At4g21870	828276	26.5 kDa class P-related heat shock protein (HSP26.5-P)	F:unknown;P:response to heat;C:cellular_component unknown;PBOFA	O.I.	C.G.	H.G.
8.7	99.0	46.0	At3g23410	821922	alcohol oxidase-related	Encodes a fatty alcohol oxidase.	O.I.	C.G.	H.G.
8.7	99.0	39.3	At1g07650	837278	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
8.7	99.0	32.9	At2g33530	817918	scpl46 (serine carboxypeptidase-like 46)	F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOB	O.I.	C.G.	H.G.
8.6	99.0	136.0	At1g43560	840939	Aty2 (Arabidopsis thioredoxin y2)	F:electron carrier activity, protein disulfide oxidoreductase activity;P:glycerol ether metabolic process, cell redox homeostasis;C:chloroplast stroma, chloroplast;BOMPFAV	O.I.	C.G.	H.G.

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GSM ID	GSM157388
Assay name	Sakakibara_1-7_DMSO-treatment-wild_Rep1_ATH1
GSE experiment	GSE6832: Cytokinin treatment on aerial parts of seedlings

Microarray experiments to specifically-expressed genes

GSM ID GSM157388 Assay name Sakakibara_1-7_DMSO-treatment-wild_Rep1_ATH1 GSE experiment GSE6832: Cytokinin treatment on aerial parts of seedlings

GSM ID GSM157388

Assay name Sakakibara_1-7_DMSO-treatment-wild_Rep1_ATH1

GSE experiment GSE6832: Cytokinin treatment on aerial parts of seedlings