Microarray experiments to specifically-expressed genes

GSM ID GSM157375
Assay name Truman_1-3_Pst-DC3000(avrRpm1)-4hpi_Rep1_ATH1
GSE experiment GSE6831: Systemic response to avirulent bacterial infection

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
68.699.9103.3At1g61120842405TPS04 (TERPENE SYNTHASE 04)Encodes a geranyllinalool synthase that produces a precursor to TMTT, a volatile plant defense C16-homoterpene. GES transcript levels rise in response to alamethicin, a fungal peptide mixture that damages membranes. This transcriptional response is blocked in JA biosynthetic and JA signaling mutants, but GES transcript levels still rise in response to alamethicin in mutants with salicylic acid and ethylene biosynthetic and/or signaling defects. GES transcripts also accumulate in response to a larval infestation. This enzyme does not localize to the plastids, and it may be present in the cytosol or endoplasmic reticulum.O.I.C.G.H.G.
52.699.8270.0At3g44860823620FAMT (farnesoic acid carboxyl-O-methyltransferase)Encodes a farnesoic acid carboxyl-O-methyltransferase.O.I.C.G.H.G.
45.399.8103.5At1g36280840534adenylosuccinate lyase, putative / adenylosuccinase, putativeF:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, catalytic activity;P:purine ribonucleotide biosynthetic process, purine base biosynthetic process, IMP biosynthetic process;C:chloroplast;BOMFAPO.I.C.G.H.G.
33.399.7149.1At1g51760841602IAR3 (IAA-ALANINE RESISTANT 3)encodes a member of the six Arabidopsis IAA-amino acid conjugate hydrolase subfamily and conjugates and conjugates IAA-Ala in vitro. Gene is expressed most strongly in roots, stems, and flowers.O.I.C.G.H.G.
32.499.7129.2At1g17420838314LOX3LipoxygenaseO.I.C.G.H.G.
31.899.7160.1At3g51450824308strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOAFO.I.C.G.H.G.
31.599.7124.5At1g52720841705unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
31.499.792.4At1g52000841629jacalin lectin family proteinF:molecular_function unknown;P:response to salt stress;C:cellular_component unknown;BOMPFVAO.I.C.G.H.G.
30.099.7302.5At1g19670838554ATCLH1 (ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1)Chlorophyllase is the first enzyme involved in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to yield chlorophyllide and phytol. AtCLH1 lacks a typical signal sequence for the chloroplast. Its expression is induced rapidly by methyljasmonate, a known promoter of senescence and chlorophyll degradation.O.I.C.G.H.G.
28.499.7156.3At5g06870830578PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2)Encodes a polygalacturonase inhibiting protein involved in plant defense response. PGIPs inhibit the activity of pectin degrading enzymes such as those produced by fungal pathogens. PGIP2 is induced by fungal infection and methyl jasmonate.O.I.C.G.H.G.
24.599.695.4At1g53885841826senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
24.099.6150.5At5g47240834771atnudt8 (Arabidopsis thaliana Nudix hydrolase homolog 8)F:hydrolase activity;P:response to wounding;C:cytosol;BOMPAFVO.I.C.G.H.G.
23.699.6262.4At2g24850817022TAT3 (TYROSINE AMINOTRANSFERASE 3)Encodes a tyrosine aminotransferase that is responsive to treatment with jasmonic acid.O.I.C.G.H.G.
23.399.6247.5At2g06050815160OPR3 (OPDA-REDUCTASE 3)Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence.O.I.C.G.H.G.
20.199.6114.4At1g44350841026ILL6encodes a protein similar to IAA amino acid conjugate hydrolase.O.I.C.G.H.G.
19.399.628.4At1g25500839136choline transporter-relatedF:unknown;P:biological_process unknown;C:chloroplast;MFOPO.I.C.G.H.G.
18.999.5180.2At2g29450817494ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5)Encodes a member of the TAU glutathione S-transferase gene family. Gene expression is induced by exposure to auxin, pathogen and herbicides. Naming convention according to Wagner et al. (2002)O.I.C.G.H.G.
18.799.565.4At5g50570835126squamosa promoter-binding protein, putativeF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMO.I.C.G.H.G.
18.499.579.6At1g58200842187MSL3 (MscS-LIKE 3)A member of MscS-like gene family, structurally very similar to MSL2, comprising of an N-terminal chloroplast transit peptide, five trans-membrane helices and a C-terminal cytoplasmic domain. Mutant plants showed abnormalities in the size and shape of plastids. MSL3-GFP was localized to discrete foci on the plastid envelope and co-localize with the plastid division protein AtMinE. MSL3 was capable of increasing the osmotic-shock survival of a mutant bacterial strain lacking MS-ion-channel activity.O.I.C.G.H.G.
18.499.574.0At5g02940831426-F:unknown;P:unknown;C:chloroplast, chloroplast envelope;POBO.I.C.G.H.G.
18.199.531.4At3g25010822092AtRLP41 (Receptor Like Protein 41)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
18.099.543.4At5g55120835603VTC5 (VITAMIN C DEFECTIVE 5)Encodes a GDP-L-galactose phosphorylase, with similar biochemical properties as VTC2.O.I.C.G.H.G.
17.799.539.6At2g46510819262ATAIB (ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR)Encodes a nuclear localized BLH domain containing transcriptional activator involved in response to ABA. Overexpression confers enhanced ABA responsiveness while loss of function mutants are ABA sensitive.O.I.C.G.H.G.
17.699.558.8At4g24350828538phosphorylase family proteinF:catalytic activity, nutrient reservoir activity;P:response to wounding;C:plant-type cell wall;BPOAFO.I.C.G.H.G.
17.099.5148.5At4g08870826458arginase, putativeEncodes one of the two arginase in the genome. Gene expression is enhanced by methyl jasmonate treatment.O.I.C.G.H.G.
16.999.559.4At1g31550840045GDSL-motif lipase, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuole;PBFOMO.I.C.G.H.G.
16.399.531.0At3g25180822110CYP82G1member of CYP82GO.I.C.G.H.G.
16.199.536.0At1g74430843784MYB95 (myb domain protein 95)Encodes a putative transcription factor (MYB95).O.I.C.G.H.G.
15.899.5216.8At4g39980830159DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1)Encodes a 2-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase, which catalyzes the first committed step in aromatic amino acid biosynthesis. Gene expression is induced by wounding and pathogenic bacteria Pseudomonas syringae.O.I.C.G.H.G.
15.299.4112.2At5g54170835505-F:molecular_function unknown;P:response to wounding;C:unknown;MPOO.I.C.G.H.G.
15.299.452.0At4g17470827458palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOO.I.C.G.H.G.
15.299.422.4At4g02360827767unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
14.599.485.1At5g13220831162JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)Plants overexpressing At5g13220.3, but not At5g13220.1 showed enhanced insensitivity to MeJa.O.I.C.G.H.G.
14.599.426.1At5g44050834428MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
14.099.451.6At2g43010818903PIF4 (phytochrome interacting factor 4)Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB.O.I.C.G.H.G.
13.999.417.7At3g57460824913catalytic/ metal ion binding / metalloendopeptidase/ zinc ion bindingF:metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding;P:proteolysis;C:cellular_component unknown;MBFPOO.I.C.G.H.G.
13.699.411.2At4g16740827377ATTPS03Monoterpene synthase, catalyzes the formation of the acyclic monoterpene (E)-beta-ocimene in response to wounding or treatment with jasmonic acid.O.I.C.G.H.G.
13.599.451.3At3g28930822529AIG2 (AVRRPT2-INDUCED GENE 2)avrRpt2-induced gene that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2O.I.C.G.H.G.
13.499.4122.4At1g70700843407TIFY7JAZ9 is a protein presumed to be involved in jasmonate signaling. JAZ9 transcript levels rise in response to a jasmonate stimulus. JAZ9 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. The Jas domain appears to be important for JAZ9-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.O.I.C.G.H.G.
13.399.43.0At5g59580836077UGT76E1 (UDP-GLUCOSYL TRANSFERASE 76E1)F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity;P:metabolic process;C:unknown;PMBVOFO.I.C.G.H.G.
12.999.3212.8At5g42650834273AOS (ALLENE OXIDE SYNTHASE)Encodes a member of the cytochrome p450 CYP74 gene family that functions as an allene oxide synthase. This enzyme catalyzes dehydration of the hydroperoxide to an unstable allene oxide in the JA biosynthetic pathway. It shows a dual catalytic activity, the major one being a 13-AOS but also expressing a 9-AOS activity.O.I.C.G.H.G.
12.999.320.7At4g10390826631protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:response to wounding;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
12.799.3144.1At3g28220822448meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:response to salt stress;C:vacuole, chloroplast envelope;PMOO.I.C.G.H.G.
12.799.367.1At4g17230827435SCL13 (Scarecrow-like 13)Encodes a scarecrow-like protein (SCL13). Member of GRAS gene family.O.I.C.G.H.G.
12.799.325.1At1g28050839698zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POAFO.I.C.G.H.G.
12.699.3253.1At3g47340823888ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.O.I.C.G.H.G.
12.499.323.6At5g52320835308CYP96A4member of CYP96AO.I.C.G.H.G.
12.199.3102.7At3g48520824011CYP94B3member of CYP94BO.I.C.G.H.G.
12.099.362.1At5g53050835385hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BOMPFAVO.I.C.G.H.G.
11.699.310.5At4g13410826972ATCSLA15encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
11.199.2131.9At5g05600830443oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, iron ion binding;P:response to salt stress;C:unknown;POBFMO.I.C.G.H.G.
11.199.293.5At1g72180843550leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
11.199.210.6At4g27590828869copper-binding protein-relatedF:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;PO.I.C.G.H.G.
11.099.27.9At1g61610842457S-locus lectin protein kinase family proteinF:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
11.099.26.2At1g41810840789transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
10.699.26.6At2g13790815862SERK4 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 4)F:protein binding, transmembrane receptor protein serine/threonine kinase activity, protein kinase activity;P:response to salt stress, cell death, protein amino acid phosphorylation, response to chitin;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
10.499.213.4At1g33080840204MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
10.399.2101.4At4g04840825821methionine sulfoxide reductase domain-containing protein / SeIR domain-containing proteinF:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;BOMPFAVO.I.C.G.H.G.
10.399.242.8At2g32680817828AtRLP23 (Receptor Like Protein 23)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
10.299.288.4At1g73480843683hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BOPMFVAO.I.C.G.H.G.
10.299.275.8At2g47600819373ATMHX (ARABIDOPSIS THALIANA MAGNESIUM/PROTON EXCHANGER)Encodes a magnesium/proton exchanger, member of putative Na+/Ca2+ antiporter gene familyO.I.C.G.H.G.
10.099.2121.1At1g74950843834TIFY10BF:molecular_function unknown;P:response to jasmonic acid stimulus, response to wounding;C:cellular_component unknown;PO.I.C.G.H.G.
9.999.167.4At3g53180824484catalytic/ glutamate-ammonia ligaseF:glutamate-ammonia ligase activity, catalytic activity;P:nitrogen compound metabolic process, N-terminal protein myristoylation, nitrogen fixation, metabolic process, glutamine biosynthetic process;C:unknown;BOAFMPO.I.C.G.H.G.
9.899.141.8At1g66760842994MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:response to wounding;C:membrane;BOPFMAO.I.C.G.H.G.
9.899.14.4At5g37610833739voltage-gated anion channelF:voltage-gated anion channel activity;P:anion transport;C:mitochondrial outer membrane, endomembrane system;PMFO.I.C.G.H.G.
9.699.112.7At5g381208337924-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family proteinF:4-coumarate-CoA ligase activity;P:metabolic process;C:unknown;BOFMPAVO.I.C.G.H.G.
9.699.13.1At3g32160822980unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
9.599.176.6At3g25780822169AOC3 (ALLENE OXIDE CYCLASE 3)Encodes allene oxide cyclase, one of the enzymes involved in jasmonic acid biosynthesis. One of four genes in Arabidopsis that encode this enzyme. mRNA expression is upregulated in senescing leaves. Note: Nomenclature for Arabidopsis allene oxide cyclase 3 (AOC3, AT3G25780) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC3 (AT3G25780) is also referred to as AOC2 in He et al. 2002 Plant Physiology, 128:876-884.O.I.C.G.H.G.
9.599.142.7At4g03400827938DFL2 (DWARF IN LIGHT 2)Encodes a GH3-related gene involved in red light-specific hypocotyl elongation. Analysis of sense and antisense transgenic plants suggests that DFL2 is located downstream of red light signal transduction and determines the degree of hypocotyl elongation.O.I.C.G.H.G.
9.499.120.8At1g75450843881CKX5 (CYTOKININ OXIDASE 5)This gene used to be called AtCKX6. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.O.I.C.G.H.G.
9.299.1121.2At1g61890842485MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
9.299.189.9At1g20510838639OPCL1 (OPC-8:0 COA LIGASE1)F:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, jasmonic acid biosynthetic process, response to wounding;C:peroxisome;BOFMPAVO.I.C.G.H.G.
9.299.166.8At1g17380838310JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5)F:molecular_function unknown;P:response to jasmonic acid stimulus;C:cellular_component unknown;PO.I.C.G.H.G.
9.299.120.1At4g168703770172transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
9.199.13.1At3g05540819719-F:unknown;P:biological_process unknown;C:cytoplasm;MFPOO.I.C.G.H.G.
9.099.132.7At5g15780831434pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFVAO.I.C.G.H.G.
8.999.05.9At4g19095827648unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
8.899.043.2At2g20340816553tyrosine decarboxylase, putativeF:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, tyrosine decarboxylase activity;P:amino acid metabolic process, response to wounding;C:cellular_component unknown;MBOFPAVO.I.C.G.H.G.
8.899.05.7At5g43610834381ATSUC6 (Sucrose-proton symporter 6)F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity;P:transport, sucrose transport;C:integral to membrane, integral to plasma membrane, membrane;BMOPFAO.I.C.G.H.G.
8.799.056.9At2g46520819263cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putativeF:protein transporter activity, importin-alpha export receptor activity, binding;P:intracellular protein transport, cell proliferation, protein import into nucleus, docking;C:nucleus, nuclear pore, membrane, cytoplasm;MFOPO.I.C.G.H.G.
8.799.015.0At5g07730830666unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFO.I.C.G.H.G.



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