CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM157340

Assay name Coates_1-12_ara1/2mut_Rep3_ATH1

GSE experiment GSE6826: Identification of candidate Arabidillo target genes in Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
53.0 99.8 183.7 At3g09220 820078 LAC7 (laccase 7) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). O.I. C.G. H.G.
52.4 99.8 38.4 At4g31940 829324 CYP82C4 member of CYP82C O.I. C.G. H.G.
50.3 99.8 324.8 At1g21310 838728 ATEXT3 (EXTENSIN 3) Encodes extensin 3. O.I. C.G. H.G.
45.3 99.8 27.4 At3g29780 822684 RALFL27 (ralf-like 27) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. C.G. H.G.
39.6 99.8 27.4 At3g46270 823772 receptor protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPBOFVA O.I. C.G. H.G.
38.0 99.8 196.6 At5g47990 834850 CYP705A5 encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings. O.I. C.G. H.G.
37.2 99.7 162.5 At4g19690 827713 IRT1 (iron-regulated transporter 1) Fe(II) transport protein (IRT1) O.I. C.G. H.G.
35.2 99.7 524.7 At1g09560 837482 GLP5 (GERMIN-LIKE PROTEIN 5) germin-like protein (GLP5) O.I. C.G. H.G.
34.8 99.7 203.8 At4g30670 829190 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
34.8 99.7 176.1 At1g14960 838061 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
34.6 99.7 426.2 At2g01530 814682 MLP329 (MLP-LIKE PROTEIN 329) F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
34.5 99.7 148.9 At5g48000 834851 CYP708A2 Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation. O.I. C.G. H.G.
34.4 99.7 37.4 At5g22890 832353 zinc finger (C2H2 type) family protein F:transcription factor activity;P:response to chitin, regulation of transcription;C:intracellular;MOPF O.I. C.G. H.G.
32.2 99.7 36.3 At3g45070 823642 sulfotransferase family protein F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MOPBF O.I. C.G. H.G.
32.1 99.7 132.1 At5g48010 834852 THAS1 (THALIANOL SYNTHASE 1) Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism. O.I. C.G. H.G.
29.8 99.7 293.7 At2g43590 818961 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMV O.I. C.G. H.G.
28.9 99.7 27.7 At3g25790 822170 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POM O.I. C.G. H.G.
28.7 99.7 202.1 At5g37740 833752 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO O.I. C.G. H.G.
28.5 99.7 25.1 At5g19800 832100 hydroxyproline-rich glycoprotein family protein F:unknown;P:biological_process unknown;C:endomembrane system;MPOFBVA O.I. C.G. H.G.
28.3 99.7 276.2 At2g21045 816639 - F:unknown;P:aging;C:unknown;BOPAFM O.I. C.G. H.G.
28.2 99.7 127.2 At3g50740 824238 UGT72E1 (UDP-glucosyl transferase 72E1) UGT72E1 is an UDPG:coniferyl alcohol glucosyltransferase which specifically glucosylates sinapyl- and coniferyl aldehydes. The enzyme is thought to be involved in lignin metabolism. O.I. C.G. H.G.
27.8 99.7 52.9 At3g58810 825050 MTPA2 (METAL TOLERANCE PROTEIN A2) Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane. O.I. C.G. H.G.
27.3 99.7 80.0 At5g45070 834538 AtPP2-A8 (Phloem protein 2-A8) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P O.I. C.G. H.G.
27.1 99.7 121.3 At1g09740 837502 ethylene-responsive protein, putative F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM O.I. C.G. H.G.
26.7 99.7 88.7 At5g37990 833778 S-adenosylmethionine-dependent methyltransferase/ methyltransferase F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMF O.I. C.G. H.G.
26.4 99.7 144.0 At2g18980 816415 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
26.1 99.7 32.1 At2g35000 818064 zinc finger (C3HC4-type RING finger) family protein E3 ligase-like protein induced by chitin oligomers. O.I. C.G. H.G.
26.0 99.7 65.4 At5g02780 831800 In2-1 protein, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFA O.I. C.G. H.G.
25.0 99.6 58.1 At5g38030 833782 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:response to nematode;C:membrane;BOPFAM O.I. C.G. H.G.
24.9 99.6 92.0 At2g44010 819006 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
24.8 99.6 249.6 At3g13610 820564 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, dioxygenase activity;P:coumarin biosynthetic process, response to cyclopentenone, hydrogen peroxide-mediated programmed cell death, secondary metabolic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
24.4 99.6 45.4 At4g05200 825868 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
24.2 99.6 72.6 At3g46900 823843 COPT2 encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast O.I. C.G. H.G.
24.0 99.6 104.0 At4g11190 826721 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
23.9 99.6 172.5 At3g62680 825442 PRP3 (PROLINE-RICH PROTEIN 3) Proline-rich protein O.I. C.G. H.G.
23.6 99.6 58.6 At5g42500 834257 disease resistance-responsive family protein F:molecular_function unknown;P:defense response;C:endomembrane system;P O.I. C.G. H.G.
23.3 99.6 286.4 At3g01420 821135 DOX1 Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid. O.I. C.G. H.G.
23.0 99.6 15.5 At5g05400 830422 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:chloroplast;PMBOFA O.I. C.G. H.G.
22.9 99.6 79.2 At2g46750 819288 FAD-binding domain-containing protein F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMA O.I. C.G. H.G.
22.5 99.6 147.4 At5g59520 836071 ZIP2 encodes a metal ion transporter whose expression is regulated by copper. O.I. C.G. H.G.
22.2 99.6 167.6 At5g04950 830377 NAS1 (NICOTIANAMINE SYNTHASE 1) Encodes a nicotianamide synthase. O.I. C.G. H.G.
21.7 99.6 62.4 At3g54580 824623 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFBPOVA O.I. C.G. H.G.
21.6 99.6 94.2 At5g50760 835148 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
21.5 99.6 419.3 At1g70850 843422 MLP34 (MLP-LIKE PROTEIN 34) F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
21.5 99.6 278.3 At1g17860 838365 trypsin and protease inhibitor family protein / Kunitz family protein F:endopeptidase inhibitor activity;P:biological_process unknown;C:apoplast, cell wall;PO O.I. C.G. H.G.
21.4 99.6 23.0 At1g51860 841613 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
20.9 99.6 133.7 At1g18980 838479 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO O.I. C.G. H.G.
20.4 99.6 71.2 At3g24290 822017 AMT1 F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPA O.I. C.G. H.G.
20.4 99.6 54.4 At1g22500 838856 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
20.4 99.6 51.7 At4g37060 829860 PLP5 (PATATIN-LIKE PROTEIN 5) F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMF O.I. C.G. H.G.
20.3 99.6 174.0 At3g54590 824624 ATHRGP1 (HYDROXYPROLINE-RICH GLYCOPROTEIN) Encodes a hydroxyproline-rich glycoprotein. O.I. C.G. H.G.
19.9 99.6 57.5 At5g04960 830378 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO O.I. C.G. H.G.
19.9 99.6 21.6 At4g25090 828612 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA O.I. C.G. H.G.
19.3 99.6 298.8 At2g01520 814681 MLP328 (MLP-LIKE PROTEIN 328) F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
19.3 99.6 55.4 At3g45710 823713 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMOFA O.I. C.G. H.G.
18.9 99.5 16.1 At1g51840 841611 protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
18.6 99.5 19.0 At5g52790 835356 CBS domain-containing protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPA O.I. C.G. H.G.
18.4 99.5 376.3 At4g37410 829895 CYP81F4 member of CYP81F O.I. C.G. H.G.
18.4 99.5 38.9 At1g05000 839348 tyrosine specific protein phosphatase family protein F:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FPOBM O.I. C.G. H.G.
18.4 99.5 22.6 At3g22800 821851 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
18.3 99.5 27.2 At2g47200 819333 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
18.2 99.5 73.2 At3g25930 822190 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P O.I. C.G. H.G.
17.8 99.5 88.4 At3g62270 825400 anion exchange family protein F:anion exchanger activity;P:anion transport;C:integral to membrane, membrane;MFPOBV O.I. C.G. H.G.
17.8 99.5 35.9 At4g37010 829855 caltractin, putative / centrin, putative F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB O.I. C.G. H.G.
17.8 99.5 15.7 At1g78990 844239 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
17.6 99.5 237.6 At5g63600 836480 FLS5 (FLAVONOL SYNTHASE 5) encodes a protein whose sequence is similar to flavonol synthase O.I. C.G. H.G.
17.6 99.5 84.6 At2g01890 814720 PAP8 (PURPLE ACID PHOSPHATASE 8) Encodes a purple acid phosphatase (PAP) belonging to the low molecular weight plant PAP group. O.I. C.G. H.G.
17.6 99.5 13.7 At2g23960 816929 defense-related protein, putative F:catalytic activity;P:defense response;C:cellular_component unknown;OBAFPM O.I. C.G. H.G.
17.4 99.5 81.5 At4g29270 829048 acid phosphatase class B family protein F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBO O.I. C.G. H.G.
17.3 99.5 250.2 At3g54040 824571 photoassimilate-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
16.8 99.5 220.4 At2g39310 818516 JAL22 (JACALIN-RELATED LECTIN 22) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
16.7 99.5 69.3 At5g38020 833781 S-adenosyl-L-methionine:carboxyl methyltransferase family protein encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) O.I. C.G. H.G.
16.6 99.5 44.3 At1g51830 841610 ATP binding / kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA O.I. C.G. H.G.
16.5 99.5 201.3 At5g43350 834353 PHT1 Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation. O.I. C.G. H.G.
16.3 99.5 316.4 At4g12510 826863 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
16.3 99.5 61.6 At1g21100 838706 O-methyltransferase, putative F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOM O.I. C.G. H.G.
16.2 99.5 444.9 At3g16390 820886 NSP3 (NITRILE SPECIFIER PROTEIN 3) Encodes a nitrile-specifier protein NSP3. NSP3 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation. O.I. C.G. H.G.
16.2 99.5 14.2 At3g28345 822463 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPV O.I. C.G. H.G.
16.1 99.5 17.8 At3g46700 823823 UDP-glycosyltransferase/ transferase, transferring glycosyl groups F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF O.I. C.G. H.G.
16.0 99.5 76.2 At1g13300 837890 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POVBMF O.I. C.G. H.G.
15.8 99.5 22.4 At3g26330 822237 CYP71B37 putative cytochrome P450 O.I. C.G. H.G.
15.6 99.5 94.8 At1g22440 838850 alcohol dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV O.I. C.G. H.G.
15.2 99.4 49.4 At5g24090 832474 acidic endochitinase (CHIB1) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBMO O.I. C.G. H.G.
15.2 99.4 26.0 At5g06330 830521 hairpin-responsive protein, putative (HIN1) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
15.1 99.4 199.1 At1g78000 844135 SULTR1 Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes. O.I. C.G. H.G.
14.9 99.4 26.6 At3g13760 820585 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:membrane;PMO O.I. C.G. H.G.
14.8 99.4 69.8 At5g08240 830720 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
14.8 99.4 46.9 At3g51330 824296 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOBV O.I. C.G. H.G.
14.7 99.4 59.9 At1g49310 841354 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
14.6 99.4 65.1 At5g05500 830433 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
14.6 99.4 42.7 At1g74760 - - O.I. C.G. H.G.
14.5 99.4 156.4 At5g17820 831650 peroxidase 57 (PER57) (P57) (PRXR10) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall, membrane, plant-type cell wall;PFOM O.I. C.G. H.G.
14.5 99.4 96.3 At2g19970 816516 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:extracellular region;MPFBO O.I. C.G. H.G.
14.5 99.4 23.5 At4g28890 829010 protein binding / ubiquitin-protein ligase/ zinc ion binding F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
14.4 99.4 58.2 At3g29035 822547 ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3) Encodes a protein with transcription factor activity. Note: this protein (AT3G29035) on occasion has also been referred to as AtNAC3, not to be confused with the AtNAC3 found at locus AT3G15500. O.I. C.G. H.G.
14.4 99.4 13.2 At5g25820 832651 exostosin family protein F:catalytic activity;P:unknown;C:membrane;OMPBFVA O.I. C.G. H.G.
14.3 99.4 567.8 At1g66200 842935 ATGSR2 encodes a cytosolic glutamate synthetase, this enzyme has low affinity with substrate ammonium O.I. C.G. H.G.
14.2 99.4 354.4 At3g16450 820893 jacalin lectin family protein F:molecular_function unknown;P:response to cold;C:nucleus;PO O.I. C.G. H.G.
14.1 99.4 163.3 At5g03240 831899 UBQ3 (POLYUBIQUITIN 3) encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments. O.I. C.G. H.G.
14.1 99.4 92.5 At5g65210 836646 TGA1 F:transcription factor activity, calmodulin binding, DNA binding;P:defense response to bacterium;C:nucleus;POM O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
53.0	99.8	183.7	At3g09220	820078	LAC7 (laccase 7)	putative laccase, a member of laccase family of genes (17 members in Arabidopsis).	O.I.	C.G.	H.G.
52.4	99.8	38.4	At4g31940	829324	CYP82C4	member of CYP82C	O.I.	C.G.	H.G.
50.3	99.8	324.8	At1g21310	838728	ATEXT3 (EXTENSIN 3)	Encodes extensin 3.	O.I.	C.G.	H.G.
45.3	99.8	27.4	At3g29780	822684	RALFL27 (ralf-like 27)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	C.G.	H.G.
39.6	99.8	27.4	At3g46270	823772	receptor protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPBOFVA	O.I.	C.G.	H.G.
38.0	99.8	196.6	At5g47990	834850	CYP705A5	encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings.	O.I.	C.G.	H.G.
37.2	99.7	162.5	At4g19690	827713	IRT1 (iron-regulated transporter 1)	Fe(II) transport protein (IRT1)	O.I.	C.G.	H.G.
35.2	99.7	524.7	At1g09560	837482	GLP5 (GERMIN-LIKE PROTEIN 5)	germin-like protein (GLP5)	O.I.	C.G.	H.G.
34.8	99.7	203.8	At4g30670	829190	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
34.8	99.7	176.1	At1g14960	838061	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
34.6	99.7	426.2	At2g01530	814682	MLP329 (MLP-LIKE PROTEIN 329)	F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
34.5	99.7	148.9	At5g48000	834851	CYP708A2	Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.	O.I.	C.G.	H.G.
34.4	99.7	37.4	At5g22890	832353	zinc finger (C2H2 type) family protein	F:transcription factor activity;P:response to chitin, regulation of transcription;C:intracellular;MOPF	O.I.	C.G.	H.G.
32.2	99.7	36.3	At3g45070	823642	sulfotransferase family protein	F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MOPBF	O.I.	C.G.	H.G.
32.1	99.7	132.1	At5g48010	834852	THAS1 (THALIANOL SYNTHASE 1)	Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism.	O.I.	C.G.	H.G.
29.8	99.7	293.7	At2g43590	818961	chitinase, putative	F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMV	O.I.	C.G.	H.G.
28.9	99.7	27.7	At3g25790	822170	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POM	O.I.	C.G.	H.G.
28.7	99.7	202.1	At5g37740	833752	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO	O.I.	C.G.	H.G.
28.5	99.7	25.1	At5g19800	832100	hydroxyproline-rich glycoprotein family protein	F:unknown;P:biological_process unknown;C:endomembrane system;MPOFBVA	O.I.	C.G.	H.G.
28.3	99.7	276.2	At2g21045	816639	-	F:unknown;P:aging;C:unknown;BOPAFM	O.I.	C.G.	H.G.
28.2	99.7	127.2	At3g50740	824238	UGT72E1 (UDP-glucosyl transferase 72E1)	UGT72E1 is an UDPG:coniferyl alcohol glucosyltransferase which specifically glucosylates sinapyl- and coniferyl aldehydes. The enzyme is thought to be involved in lignin metabolism.	O.I.	C.G.	H.G.
27.8	99.7	52.9	At3g58810	825050	MTPA2 (METAL TOLERANCE PROTEIN A2)	Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane.	O.I.	C.G.	H.G.
27.3	99.7	80.0	At5g45070	834538	AtPP2-A8 (Phloem protein 2-A8)	F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P	O.I.	C.G.	H.G.
27.1	99.7	121.3	At1g09740	837502	ethylene-responsive protein, putative	F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM	O.I.	C.G.	H.G.
26.7	99.7	88.7	At5g37990	833778	S-adenosylmethionine-dependent methyltransferase/ methyltransferase	F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMF	O.I.	C.G.	H.G.
26.4	99.7	144.0	At2g18980	816415	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
26.1	99.7	32.1	At2g35000	818064	zinc finger (C3HC4-type RING finger) family protein	E3 ligase-like protein induced by chitin oligomers.	O.I.	C.G.	H.G.
26.0	99.7	65.4	At5g02780	831800	In2-1 protein, putative	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFA	O.I.	C.G.	H.G.
25.0	99.6	58.1	At5g38030	833782	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:response to nematode;C:membrane;BOPFAM	O.I.	C.G.	H.G.
24.9	99.6	92.0	At2g44010	819006	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
24.8	99.6	249.6	At3g13610	820564	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, dioxygenase activity;P:coumarin biosynthetic process, response to cyclopentenone, hydrogen peroxide-mediated programmed cell death, secondary metabolic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
24.4	99.6	45.4	At4g05200	825868	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
24.2	99.6	72.6	At3g46900	823843	COPT2	encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast	O.I.	C.G.	H.G.
24.0	99.6	104.0	At4g11190	826721	disease resistance-responsive family protein / dirigent family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
23.9	99.6	172.5	At3g62680	825442	PRP3 (PROLINE-RICH PROTEIN 3)	Proline-rich protein	O.I.	C.G.	H.G.
23.6	99.6	58.6	At5g42500	834257	disease resistance-responsive family protein	F:molecular_function unknown;P:defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
23.3	99.6	286.4	At3g01420	821135	DOX1	Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid.	O.I.	C.G.	H.G.
23.0	99.6	15.5	At5g05400	830422	disease resistance protein (CC-NBS-LRR class), putative	F:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:chloroplast;PMBOFA	O.I.	C.G.	H.G.
22.9	99.6	79.2	At2g46750	819288	FAD-binding domain-containing protein	F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMA	O.I.	C.G.	H.G.
22.5	99.6	147.4	At5g59520	836071	ZIP2	encodes a metal ion transporter whose expression is regulated by copper.	O.I.	C.G.	H.G.
22.2	99.6	167.6	At5g04950	830377	NAS1 (NICOTIANAMINE SYNTHASE 1)	Encodes a nicotianamide synthase.	O.I.	C.G.	H.G.
21.7	99.6	62.4	At3g54580	824623	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFBPOVA	O.I.	C.G.	H.G.
21.6	99.6	94.2	At5g50760	835148	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
21.5	99.6	419.3	At1g70850	843422	MLP34 (MLP-LIKE PROTEIN 34)	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.5	99.6	278.3	At1g17860	838365	trypsin and protease inhibitor family protein / Kunitz family protein	F:endopeptidase inhibitor activity;P:biological_process unknown;C:apoplast, cell wall;PO	O.I.	C.G.	H.G.
21.4	99.6	23.0	At1g51860	841613	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
20.9	99.6	133.7	At1g18980	838479	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO	O.I.	C.G.	H.G.
20.4	99.6	71.2	At3g24290	822017	AMT1	F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPA	O.I.	C.G.	H.G.
20.4	99.6	54.4	At1g22500	838856	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
20.4	99.6	51.7	At4g37060	829860	PLP5 (PATATIN-LIKE PROTEIN 5)	F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMF	O.I.	C.G.	H.G.
20.3	99.6	174.0	At3g54590	824624	ATHRGP1 (HYDROXYPROLINE-RICH GLYCOPROTEIN)	Encodes a hydroxyproline-rich glycoprotein.	O.I.	C.G.	H.G.
19.9	99.6	57.5	At5g04960	830378	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
19.9	99.6	21.6	At4g25090	828612	respiratory burst oxidase, putative / NADPH oxidase, putative	F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA	O.I.	C.G.	H.G.
19.3	99.6	298.8	At2g01520	814681	MLP328 (MLP-LIKE PROTEIN 328)	F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.3	99.6	55.4	At3g45710	823713	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;PBMOFA	O.I.	C.G.	H.G.
18.9	99.5	16.1	At1g51840	841611	protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
18.6	99.5	19.0	At5g52790	835356	CBS domain-containing protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPA	O.I.	C.G.	H.G.
18.4	99.5	376.3	At4g37410	829895	CYP81F4	member of CYP81F	O.I.	C.G.	H.G.
18.4	99.5	38.9	At1g05000	839348	tyrosine specific protein phosphatase family protein	F:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FPOBM	O.I.	C.G.	H.G.
18.4	99.5	22.6	At3g22800	821851	leucine-rich repeat family protein / extensin family protein	F:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
18.3	99.5	27.2	At2g47200	819333	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.2	99.5	73.2	At3g25930	822190	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
17.8	99.5	88.4	At3g62270	825400	anion exchange family protein	F:anion exchanger activity;P:anion transport;C:integral to membrane, membrane;MFPOBV	O.I.	C.G.	H.G.
17.8	99.5	35.9	At4g37010	829855	caltractin, putative / centrin, putative	F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB	O.I.	C.G.	H.G.
17.8	99.5	15.7	At1g78990	844239	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
17.6	99.5	237.6	At5g63600	836480	FLS5 (FLAVONOL SYNTHASE 5)	encodes a protein whose sequence is similar to flavonol synthase	O.I.	C.G.	H.G.
17.6	99.5	84.6	At2g01890	814720	PAP8 (PURPLE ACID PHOSPHATASE 8)	Encodes a purple acid phosphatase (PAP) belonging to the low molecular weight plant PAP group.	O.I.	C.G.	H.G.
17.6	99.5	13.7	At2g23960	816929	defense-related protein, putative	F:catalytic activity;P:defense response;C:cellular_component unknown;OBAFPM	O.I.	C.G.	H.G.
17.4	99.5	81.5	At4g29270	829048	acid phosphatase class B family protein	F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBO	O.I.	C.G.	H.G.
17.3	99.5	250.2	At3g54040	824571	photoassimilate-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
16.8	99.5	220.4	At2g39310	818516	JAL22 (JACALIN-RELATED LECTIN 22)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
16.7	99.5	69.3	At5g38020	833781	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)	O.I.	C.G.	H.G.
16.6	99.5	44.3	At1g51830	841610	ATP binding / kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA	O.I.	C.G.	H.G.
16.5	99.5	201.3	At5g43350	834353	PHT1	Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation.	O.I.	C.G.	H.G.
16.3	99.5	316.4	At4g12510	826863	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
16.3	99.5	61.6	At1g21100	838706	O-methyltransferase, putative	F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOM	O.I.	C.G.	H.G.
16.2	99.5	444.9	At3g16390	820886	NSP3 (NITRILE SPECIFIER PROTEIN 3)	Encodes a nitrile-specifier protein NSP3. NSP3 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.	O.I.	C.G.	H.G.
16.2	99.5	14.2	At3g28345	822463	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPV	O.I.	C.G.	H.G.
16.1	99.5	17.8	At3g46700	823823	UDP-glycosyltransferase/ transferase, transferring glycosyl groups	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF	O.I.	C.G.	H.G.
16.0	99.5	76.2	At1g13300	837890	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POVBMF	O.I.	C.G.	H.G.
15.8	99.5	22.4	At3g26330	822237	CYP71B37	putative cytochrome P450	O.I.	C.G.	H.G.
15.6	99.5	94.8	At1g22440	838850	alcohol dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV	O.I.	C.G.	H.G.
15.2	99.4	49.4	At5g24090	832474	acidic endochitinase (CHIB1)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBMO	O.I.	C.G.	H.G.
15.2	99.4	26.0	At5g06330	830521	hairpin-responsive protein, putative (HIN1)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
15.1	99.4	199.1	At1g78000	844135	SULTR1	Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes.	O.I.	C.G.	H.G.
14.9	99.4	26.6	At3g13760	820585	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:membrane;PMO	O.I.	C.G.	H.G.
14.8	99.4	69.8	At5g08240	830720	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
14.8	99.4	46.9	At3g51330	824296	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOBV	O.I.	C.G.	H.G.
14.7	99.4	59.9	At1g49310	841354	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
14.6	99.4	65.1	At5g05500	830433	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
14.6	99.4	42.7	At1g74760		-	-	O.I.	C.G.	H.G.
14.5	99.4	156.4	At5g17820	831650	peroxidase 57 (PER57) (P57) (PRXR10)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall, membrane, plant-type cell wall;PFOM	O.I.	C.G.	H.G.
14.5	99.4	96.3	At2g19970	816516	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:extracellular region;MPFBO	O.I.	C.G.	H.G.
14.5	99.4	23.5	At4g28890	829010	protein binding / ubiquitin-protein ligase/ zinc ion binding	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
14.4	99.4	58.2	At3g29035	822547	ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3)	Encodes a protein with transcription factor activity. Note: this protein (AT3G29035) on occasion has also been referred to as AtNAC3, not to be confused with the AtNAC3 found at locus AT3G15500.	O.I.	C.G.	H.G.
14.4	99.4	13.2	At5g25820	832651	exostosin family protein	F:catalytic activity;P:unknown;C:membrane;OMPBFVA	O.I.	C.G.	H.G.
14.3	99.4	567.8	At1g66200	842935	ATGSR2	encodes a cytosolic glutamate synthetase, this enzyme has low affinity with substrate ammonium	O.I.	C.G.	H.G.
14.2	99.4	354.4	At3g16450	820893	jacalin lectin family protein	F:molecular_function unknown;P:response to cold;C:nucleus;PO	O.I.	C.G.	H.G.
14.1	99.4	163.3	At5g03240	831899	UBQ3 (POLYUBIQUITIN 3)	encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments.	O.I.	C.G.	H.G.
14.1	99.4	92.5	At5g65210	836646	TGA1	F:transcription factor activity, calmodulin binding, DNA binding;P:defense response to bacterium;C:nucleus;POM	O.I.	C.G.	H.G.

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GSM ID	GSM157340
Assay name	Coates_1-12_ara1/2mut_Rep3_ATH1
GSE experiment	GSE6826: Identification of candidate Arabidillo target genes in Arabidopsis

Microarray experiments to specifically-expressed genes

GSM ID GSM157340 Assay name Coates_1-12_ara1/2mut_Rep3_ATH1 GSE experiment GSE6826: Identification of candidate Arabidillo target genes in Arabidopsis

GSM ID GSM157340

Assay name Coates_1-12_ara1/2mut_Rep3_ATH1

GSE experiment GSE6826: Identification of candidate Arabidillo target genes in Arabidopsis