Microarray experiments to specifically-expressed genes

GSM ID GSM157321
Assay name Hammond_3-14_Potassium-starved-shoot_Rep3_ATH1
GSE experiment GSE6825: Differential gene expression patterns in potassium-starved and Caesium-treated plants

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
72.099.978.6At1g16510838221auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
55.899.8209.0At3g51860824349CAX3 (CATION EXCHANGER 3)F:cation:cation antiporter activity, calcium:cation antiporter activity, calcium:hydrogen antiporter activity;P:in 9 processes;C:plant-type vacuole membrane, vacuolar membrane, vacuole;BFOPAMO.I.C.G.H.G.
47.799.890.3At3g50770824241calmodulin-related protein, putativeF:calcium ion binding;P:biological_process unknown;C:chloroplast;MFPOBO.I.C.G.H.G.
44.799.872.0At4g25000828603AMY1 (ALPHA-AMYLASE-LIKE)Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830).O.I.C.G.H.G.
40.499.878.0At3g49580824120LSU1 (RESPONSE TO LOW SULFUR 1)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
37.299.7125.3At4g18280827554glycine-rich cell wall protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.C.G.H.G.
27.999.7211.0At4g19200827660proline-rich family proteinF:unknown;P:unknown;C:unknown;MBPFOVAO.I.C.G.H.G.
27.499.743.0At3g05400819704sugar transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOAO.I.C.G.H.G.
26.599.740.2At5g64000836521SAL23'(2'),5'-bisphosphate nucleotidaseO.I.C.G.H.G.
25.699.7175.9At2g18660816381EXLB3 (EXPANSIN-LIKE B3 PRECURSOR)Encodes PNP-A (Plant Natriuretic Peptide A). PNPs are a class of systemically mobile molecules distantly related to expansins; their biological role has remained elusive. PNP-A contains a signal peptide domain and is secreted into the extracellular space. Co-expression analyses using microarray data suggest that PNP-A may function as a component of plant defence response and SAR in particular, and could be classified as a newly identified PR protein.O.I.C.G.H.G.
25.399.6469.6At1g75040843842PR5 (PATHOGENESIS-RELATED GENE 5)Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment.O.I.C.G.H.G.
24.599.647.3At1g58420842211-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
24.499.648.2At3g10190820181calmodulin, putativeF:calcium ion binding;P:biological_process unknown;C:plasma membrane;MPFOBO.I.C.G.H.G.
23.399.664.3At2g32680817828AtRLP23 (Receptor Like Protein 23)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
23.099.6237.4At1g65490842861unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
22.999.6121.1At1g68570843186proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;BPMOFO.I.C.G.H.G.
22.899.626.0At1g72240843556unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
20.999.629.4At4g23880828487unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFO.I.C.G.H.G.
20.399.623.9At4g01130828207acetylesterase, putativeF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
20.199.6369.5At3g57260824893BGL2 (BETA-1,3-GLUCANASE 2)beta 1,3-glucanaseO.I.C.G.H.G.
19.499.651.0At3g60520825223unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
19.299.6202.3At5g10380830902RING1Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators.O.I.C.G.H.G.
18.099.511.1At1g76530843986auxin efflux carrier family proteinF:auxin:hydrogen symporter activity;P:auxin polar transport;C:endomembrane system, integral to membrane;PFOO.I.C.G.H.G.
17.999.5257.7At5g10760830943aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFOO.I.C.G.H.G.
17.599.583.5At1g50290841451unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:cytosol;PO.I.C.G.H.G.
16.199.5138.1At1g55210841964disease resistance responseF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
14.599.4323.9At5g59310836050LTP4 (LIPID TRANSFER PROTEIN 4)Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The mRNA is present in flowers and siliques, and is strongly up-regulated by abscisic acid. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
14.199.444.3At5g19875832109unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;PO.I.C.G.H.G.
13.999.448.5At3g47380823892invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
13.799.435.0At1g56150842068auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
13.699.435.4At5g41400834142zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBO.I.C.G.H.G.
13.599.446.9At5g52390835315photoassimilate-responsive protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
13.399.451.4At3g47480823902calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOBO.I.C.G.H.G.
13.199.481.9At1g65500842862unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
13.099.493.1At5g18470831965curculin-like (mannose-binding) lectin family proteinF:sugar binding;P:biological_process unknown;C:plant-type cell wall;PO.I.C.G.H.G.
13.099.461.2At5g39670833963calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOBO.I.C.G.H.G.
12.999.352.0At4g38860830041auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
12.299.373.0At2g43290818931MSS3 (multicopy suppressors of snf4 deficiency in yeast 3)Encodes calmodulin-like MSS3.O.I.C.G.H.G.
11.599.342.8At4g37150829869MES9 (METHYL ESTERASE 9)Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES9 appears to be involved in MeSA hydrolysis in planta. Expression of MES9 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
11.399.341.8At1g03730839106unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
11.299.2167.3At2g43570818959chitinase, putativeF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMVO.I.C.G.H.G.
11.199.272.0At5g48850834943ATSDI1 (SULPHUR DEFICIENCY-INDUCED 1)homologous to the wheat sulphate deficiency-induced gene sdi1. Expression in root and leaf is induced by sulfur starvation. Knockout mutants retained higher root and leaf sulfate concentrations, indicating a role in regulation of stored sulfate pools.O.I.C.G.H.G.
10.999.217.9At2g28710817420zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMOO.I.C.G.H.G.
10.499.2156.0At5g24530832524DMR6 (DOWNY MILDEW RESISTANT 6)Encodes a putative 2OG-Fe(II) oxygenase that is defense-associated but required for susceptibility to downy mildew.O.I.C.G.H.G.
10.499.227.1At3g12830820465auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
10.299.2254.3At2g41410818739calmodulin, putativeF:calcium ion binding;P:unknown;C:plasma membrane;MPFOBO.I.C.G.H.G.
10.299.226.5At1g23840838995unknown proteinF:unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
10.299.26.7At2g22200816754AP2 domain-containing transcription factorencodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.O.I.C.G.H.G.
10.199.2326.6At2g46600819272calcium-binding protein, putativeF:calcium ion binding;P:unknown;C:cellular_component unknown;MPOFBO.I.C.G.H.G.
9.899.173.7At1g47400841144unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
9.899.138.6At1g67970843125AT-HSFA8member of Heat Stress Transcription Factor (Hsf) familyO.I.C.G.H.G.
9.599.177.8At4g22190828310unknown proteinF:unknown;P:unknown;C:unknown;OMPFBO.I.C.G.H.G.
9.599.129.1At1g75810843914unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
9.399.1123.0At3g28220822448meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:response to salt stress;C:vacuole, chloroplast envelope;PMOO.I.C.G.H.G.
9.099.120.4At3g52710824437unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
8.999.040.6At4g28390828955AAC3 (ADP/ATP CARRIER 3)Encodes a mitochondrial ADP/ATP carrier protein. Shown in heterologous systems to be located in the plasma membrane. Has comparable affinity for ADP and ATP (in E.coli).O.I.C.G.H.G.
8.799.082.6At1g01140839349CIPK9 (CBL-INTERACTING PROTEIN KINASE 9)Encodes a CBL-interacting protein kinase with similarity to SOS2O.I.C.G.H.G.
8.799.066.5At4g34760829628auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POO.I.C.G.H.G.



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