CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM157318

Assay name Hammond_3-8_Potassium-starved-shoot_Rep2_ATH1

GSE experiment GSE6825: Differential gene expression patterns in potassium-starved and Caesium-treated plants

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
112.5 99.9 98.2 At1g16510 838221 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
92.8 99.9 126.0 At3g50770 824241 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:chloroplast;MFPOB O.I. C.G. H.G.
65.1 99.8 77.1 At1g58420 842211 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
55.7 99.8 57.9 At4g37290 829883 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
52.3 99.8 60.8 At3g12830 820465 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
46.4 99.8 272.1 At4g19200 827660 proline-rich family protein F:unknown;P:unknown;C:unknown;MBPFOVA O.I. C.G. H.G.
42.7 99.8 134.2 At4g18280 827554 glycine-rich cell wall protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown O.I. C.G. H.G.
42.6 99.8 68.5 At2g12290 815700 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
41.4 99.8 35.0 At1g72240 843556 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
39.0 99.8 217.3 At2g18660 816381 EXLB3 (EXPANSIN-LIKE B3 PRECURSOR) Encodes PNP-A (Plant Natriuretic Peptide A). PNPs are a class of systemically mobile molecules distantly related to expansins; their biological role has remained elusive. PNP-A contains a signal peptide domain and is secreted into the extracellular space. Co-expression analyses using microarray data suggest that PNP-A may function as a component of plant defence response and SAR in particular, and could be classified as a newly identified PR protein. O.I. C.G. H.G.
33.9 99.7 17.4 At5g45630 834603 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
33.7 99.7 56.6 At3g10190 820181 calmodulin, putative F:calcium ion binding;P:biological_process unknown;C:plasma membrane;MPFOB O.I. C.G. H.G.
32.9 99.7 35.0 At1g20350 838623 ATTIM17-1 mitochondrial inner membrane translocase O.I. C.G. H.G.
32.1 99.7 158.6 At3g51860 824349 CAX3 (CATION EXCHANGER 3) F:cation:cation antiporter activity, calcium:cation antiporter activity, calcium:hydrogen antiporter activity;P:in 9 processes;C:plant-type vacuole membrane, vacuolar membrane, vacuole;BFOPAM O.I. C.G. H.G.
31.9 99.7 51.5 At3g04000 819555 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
27.4 99.7 73.8 At3g47480 823902 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOB O.I. C.G. H.G.
27.0 99.7 56.0 At4g25000 828603 AMY1 (ALPHA-AMYLASE-LIKE) Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830). O.I. C.G. H.G.
25.8 99.7 251.4 At1g65490 842861 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
24.9 99.6 171.6 At1g55210 841964 disease resistance response F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
24.4 99.6 46.8 At1g56150 842068 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
24.1 99.6 71.2 At4g38860 830041 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
23.4 99.6 101.1 At2g43290 818931 MSS3 (multicopy suppressors of snf4 deficiency in yeast 3) Encodes calmodulin-like MSS3. O.I. C.G. H.G.
23.4 99.6 31.1 At4g23880 828487 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPF O.I. C.G. H.G.
21.8 99.6 16.4 At5g44210 834444 ERF9 (ERF DOMAIN PROTEIN 9) encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-9). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. O.I. C.G. H.G.
21.5 99.6 243.5 At2g43510 818952 ATTI1 Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory. O.I. C.G. H.G.
20.0 99.6 89.4 At1g50290 841451 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cytosol;P O.I. C.G. H.G.
19.8 99.6 36.2 At1g78410 844177 VQ motif-containing protein F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P O.I. C.G. H.G.
19.5 99.6 40.1 At1g05000 839348 tyrosine specific protein phosphatase family protein F:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FPOBM O.I. C.G. H.G.
19.0 99.5 23.6 At2g28710 817420 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMO O.I. C.G. H.G.
18.9 99.5 345.9 At2g41410 818739 calmodulin, putative F:calcium ion binding;P:unknown;C:plasma membrane;MPFOB O.I. C.G. H.G.
18.6 99.5 85.1 At2g29350 817484 SAG13 senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenase O.I. C.G. H.G.
18.4 99.5 68.4 At1g21525 3766777 - pseudogene of unknown protein O.I. C.G. H.G.
18.0 99.5 53.0 At1g03730 839106 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
17.8 99.5 93.6 At1g52720 841705 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
16.4 99.5 51.2 At4g37150 829869 MES9 (METHYL ESTERASE 9) Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES9 appears to be involved in MeSA hydrolysis in planta. Expression of MES9 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
16.3 99.5 61.4 At2g24040 816938 hydrophobic protein, putative / low temperature and salt responsive protein, putative F:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;PFBMO O.I. C.G. H.G.
16.3 99.5 31.5 At5g64000 836521 SAL2 3'(2'),5'-bisphosphate nucleotidase O.I. C.G. H.G.
16.2 99.5 21.4 At4g01130 828207 acetylesterase, putative F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
16.0 99.5 373.2 At1g75040 843842 PR5 (PATHOGENESIS-RELATED GENE 5) Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment. O.I. C.G. H.G.
15.9 99.5 45.0 At1g62420 842540 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
15.8 99.5 55.1 At3g22160 821780 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBV O.I. C.G. H.G.
15.6 99.5 118.3 At1g25560 839143 TEM1 (TEMPRANILLO 1) Encodes a member of the RAV transcription factor family that contains AP2 and B3 binding domains. Involved in the regulation of flowering under long days. Loss of function results in early flowering. Overexpression causes late flowering and repression of expression of FT. O.I. C.G. H.G.
15.5 99.5 196.7 At2g43570 818959 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMV O.I. C.G. H.G.
15.4 99.5 35.8 At1g53030 841736 cytochrome c oxidase copper chaperone family protein encodes a copper chaperone, can functional complements the yeast COX17 null mutant. May play a role in the delivery of copper to mitochondria. Expressed in roots and thus may also play a role in copper transport in the roots. O.I. C.G. H.G.
14.5 99.4 65.3 At2g28400 817388 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
14.5 99.4 46.6 At5g50720 835144 ATHVA22E Encodes one of five HVA22 homologs in Arabidopsis. HVA22 is an ABA- and stress-inducible gene first isolated from barley. Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress, salt stress, ABA treatment or dehydration. O.I. C.G. H.G.
14.4 99.4 64.5 At3g22530 821824 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
14.1 99.4 53.5 At3g60540 825225 sec61beta family protein F:protein transporter activity;P:protein transport;C:unknown;MFPO O.I. C.G. H.G.
14.1 99.4 17.3 At3g25870 822182 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.0 99.4 214.4 At2g26020 817143 PDF1.2b (plant defensin 1.2b) Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
13.8 99.4 21.5 At4g11370 826739 RHA1A Encodes a putative RING-H2 finger protein RHA1a. O.I. C.G. H.G.
13.5 99.4 38.3 At5g50335 835100 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.4 99.4 62.1 At5g39670 833963 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOB O.I. C.G. H.G.
13.3 99.4 42.3 At3g60520 825223 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.3 99.4 33.5 At1g02470 837812 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOP O.I. C.G. H.G.
12.9 99.3 50.0 At2g27580 817304 zinc finger (AN1-like) family protein F:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVF O.I. C.G. H.G.
12.9 99.3 33.9 At1g75810 843914 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
12.8 99.3 165.4 At5g10380 830902 RING1 Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators. O.I. C.G. H.G.
12.8 99.3 92.7 At3g14430 820666 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:mitochondrion;P O.I. C.G. H.G.
12.5 99.3 62.3 At5g16450 831506 dimethylmenaquinone methyltransferase family protein F:ribonuclease inhibitor activity;P:regulation of RNA metabolic process;C:cellular_component unknown;BOPAFM O.I. C.G. H.G.
12.4 99.3 290.1 At3g57260 824893 BGL2 (BETA-1,3-GLUCANASE 2) beta 1,3-glucanase O.I. C.G. H.G.
12.2 99.3 85.1 At2g27830 817330 - F:molecular_function unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
12.0 99.3 32.9 At2g35820 818155 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO O.I. C.G. H.G.
11.8 99.3 32.2 At5g62900 836410 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
11.7 99.3 190.9 At1g18210 838401 calcium-binding protein, putative F:calcium ion binding;P:biological_process unknown;C:plasma membrane, vacuole;MFPOB O.I. C.G. H.G.
11.5 99.3 45.2 At2g32680 817828 AtRLP23 (Receptor Like Protein 23) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
11.3 99.3 76.1 At4g34760 829628 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
11.3 99.3 34.9 At2g35290 818096 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
11.1 99.2 31.0 At1g73790 843714 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
11.0 99.2 335.3 At3g04720 819632 PR4 (PATHOGENESIS-RELATED 4) Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection. O.I. C.G. H.G.
10.9 99.2 120.7 At1g63840 842687 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to abscisic acid stimulus;C:endomembrane system;PMOFV O.I. C.G. H.G.
10.9 99.2 68.4 At4g19390 827680 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPA O.I. C.G. H.G.
10.9 99.2 48.1 At2g21180 816653 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.8 99.2 238.3 At5g67600 836896 unknown protein F:unknown;P:unknown;C:plasma membrane;MOPFBV O.I. C.G. H.G.
10.8 99.2 48.5 At3g46900 823843 COPT2 encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast O.I. C.G. H.G.
10.7 99.2 86.3 At3g51660 824329 macrophage migration inhibitory factor family protein / MIF family protein F:molecular_function unknown;P:inflammatory response, response to other organism;C:peroxisome;MPOB O.I. C.G. H.G.
10.6 99.2 65.1 At1g48320 841252 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPM O.I. C.G. H.G.
10.3 99.2 113.6 At3g16570 820907 RALFL23 (ralf-like 23) Encodes RALF23, a member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. RALF23 is significantly downregulated by brassinolide treatment of seedlings. Overexpression of AtRALF23 impairs brassinolide-induced hypocotyls elongation, and mature overexpressing plants are shorter and bushier. RALF23 overexpression produces slower growing seedlings with roots that have reduced capacity to acidify the rhizosphere. O.I. C.G. H.G.
10.2 99.2 329.7 At2g46600 819272 calcium-binding protein, putative F:calcium ion binding;P:unknown;C:cellular_component unknown;MPOFB O.I. C.G. H.G.
10.2 99.2 14.6 At1g75580 843893 auxin-responsive protein, putative F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
10.1 99.2 45.5 At4g33960 829542 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
10.1 99.2 22.4 At1g06160 837125 ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. O.I. C.G. H.G.
10.0 99.2 71.2 At1g56060 842057 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
10.0 99.2 56.9 At2g05630 815112 autophagy 8d (APG8d) in the Arabidopsis autophagy pathway O.I. C.G. H.G.
10.0 99.2 30.4 At5g41400 834142 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
9.9 99.1 72.1 At5g52750 835352 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOM O.I. C.G. H.G.
9.9 99.1 58.7 At3g60690 825240 auxin-responsive family protein F:unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
9.8 99.1 191.0 At5g10760 830943 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFO O.I. C.G. H.G.
9.7 99.1 48.0 At3g13950 820608 unknown protein F:molecular_function unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
9.6 99.1 100.7 At1g31130 839998 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOA O.I. C.G. H.G.
9.6 99.1 33.7 At3g55470 824713 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.
9.5 99.1 257.4 At3g22600 821832 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;POM O.I. C.G. H.G.
9.5 99.1 41.1 At1g66760 842994 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:response to wounding;C:membrane;BOPFMA O.I. C.G. H.G.
9.5 99.1 24.4 At3g01170 820469 structural constituent of ribosome F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, chloroplast;P O.I. C.G. H.G.
9.4 99.1 115.8 At1g71950 843526 identical protein binding / serine-type endopeptidase F:identical protein binding, serine-type endopeptidase activity;P:negative regulation of catalytic activity;C:plasma membrane;P O.I. C.G. H.G.
9.4 99.1 110.8 At3g13720 820581 PRA8 F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;POMF O.I. C.G. H.G.
9.3 99.1 104.7 At5g03455 831832 CDC25 Encodes a homolog of yeast cell cycle regulator CDC25. It has a sole catalytic domain and devoid of the N-terminal regulatory region found in the human CDC25 and is capable of reducing the mitotic cell length of transformed fission yeast. Non-plant CDC25 proteins have been shown to do this. However, the gene is more or less constant, regardless of whether the tissue examined contained proliferative cells. Also described as having arsenate reductase activity involved in arsenate resistance. O.I. C.G. H.G.
9.3 99.1 30.6 At4g05590 825927 unknown protein F:unknown;P:biological_process unknown;C:mitochondrion;MFPO O.I. C.G. H.G.
9.2 99.1 28.7 At4g04800 825817 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein F:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:nucleus;OBMPFAV O.I. C.G. H.G.
9.1 99.1 147.3 At3g03990 819554 esterase/lipase/thioesterase family protein F:catalytic activity;P:unknown;C:unknown;BOPMFA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
112.5	99.9	98.2	At1g16510	838221	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
92.8	99.9	126.0	At3g50770	824241	calmodulin-related protein, putative	F:calcium ion binding;P:biological_process unknown;C:chloroplast;MFPOB	O.I.	C.G.	H.G.
65.1	99.8	77.1	At1g58420	842211	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
55.7	99.8	57.9	At4g37290	829883	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
52.3	99.8	60.8	At3g12830	820465	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
46.4	99.8	272.1	At4g19200	827660	proline-rich family protein	F:unknown;P:unknown;C:unknown;MBPFOVA	O.I.	C.G.	H.G.
42.7	99.8	134.2	At4g18280	827554	glycine-rich cell wall protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	O.I.	C.G.	H.G.
42.6	99.8	68.5	At2g12290	815700	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
41.4	99.8	35.0	At1g72240	843556	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
39.0	99.8	217.3	At2g18660	816381	EXLB3 (EXPANSIN-LIKE B3 PRECURSOR)	Encodes PNP-A (Plant Natriuretic Peptide A). PNPs are a class of systemically mobile molecules distantly related to expansins; their biological role has remained elusive. PNP-A contains a signal peptide domain and is secreted into the extracellular space. Co-expression analyses using microarray data suggest that PNP-A may function as a component of plant defence response and SAR in particular, and could be classified as a newly identified PR protein.	O.I.	C.G.	H.G.
33.9	99.7	17.4	At5g45630	834603	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
33.7	99.7	56.6	At3g10190	820181	calmodulin, putative	F:calcium ion binding;P:biological_process unknown;C:plasma membrane;MPFOB	O.I.	C.G.	H.G.
32.9	99.7	35.0	At1g20350	838623	ATTIM17-1	mitochondrial inner membrane translocase	O.I.	C.G.	H.G.
32.1	99.7	158.6	At3g51860	824349	CAX3 (CATION EXCHANGER 3)	F:cation:cation antiporter activity, calcium:cation antiporter activity, calcium:hydrogen antiporter activity;P:in 9 processes;C:plant-type vacuole membrane, vacuolar membrane, vacuole;BFOPAM	O.I.	C.G.	H.G.
31.9	99.7	51.5	At3g04000	819555	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
27.4	99.7	73.8	At3g47480	823902	calcium-binding EF hand family protein	F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOB	O.I.	C.G.	H.G.
27.0	99.7	56.0	At4g25000	828603	AMY1 (ALPHA-AMYLASE-LIKE)	Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830).	O.I.	C.G.	H.G.
25.8	99.7	251.4	At1g65490	842861	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
24.9	99.6	171.6	At1g55210	841964	disease resistance response	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
24.4	99.6	46.8	At1g56150	842068	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
24.1	99.6	71.2	At4g38860	830041	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
23.4	99.6	101.1	At2g43290	818931	MSS3 (multicopy suppressors of snf4 deficiency in yeast 3)	Encodes calmodulin-like MSS3.	O.I.	C.G.	H.G.
23.4	99.6	31.1	At4g23880	828487	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPF	O.I.	C.G.	H.G.
21.8	99.6	16.4	At5g44210	834444	ERF9 (ERF DOMAIN PROTEIN 9)	encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-9). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.	O.I.	C.G.	H.G.
21.5	99.6	243.5	At2g43510	818952	ATTI1	Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory.	O.I.	C.G.	H.G.
20.0	99.6	89.4	At1g50290	841451	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:cytosol;P	O.I.	C.G.	H.G.
19.8	99.6	36.2	At1g78410	844177	VQ motif-containing protein	F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.5	99.6	40.1	At1g05000	839348	tyrosine specific protein phosphatase family protein	F:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FPOBM	O.I.	C.G.	H.G.
19.0	99.5	23.6	At2g28710	817420	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMO	O.I.	C.G.	H.G.
18.9	99.5	345.9	At2g41410	818739	calmodulin, putative	F:calcium ion binding;P:unknown;C:plasma membrane;MPFOB	O.I.	C.G.	H.G.
18.6	99.5	85.1	At2g29350	817484	SAG13	senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenase	O.I.	C.G.	H.G.
18.4	99.5	68.4	At1g21525	3766777	-	pseudogene of unknown protein	O.I.	C.G.	H.G.
18.0	99.5	53.0	At1g03730	839106	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
17.8	99.5	93.6	At1g52720	841705	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.4	99.5	51.2	At4g37150	829869	MES9 (METHYL ESTERASE 9)	Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES9 appears to be involved in MeSA hydrolysis in planta. Expression of MES9 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
16.3	99.5	61.4	At2g24040	816938	hydrophobic protein, putative / low temperature and salt responsive protein, putative	F:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;PFBMO	O.I.	C.G.	H.G.
16.3	99.5	31.5	At5g64000	836521	SAL2	3'(2'),5'-bisphosphate nucleotidase	O.I.	C.G.	H.G.
16.2	99.5	21.4	At4g01130	828207	acetylesterase, putative	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
16.0	99.5	373.2	At1g75040	843842	PR5 (PATHOGENESIS-RELATED GENE 5)	Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment.	O.I.	C.G.	H.G.
15.9	99.5	45.0	At1g62420	842540	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
15.8	99.5	55.1	At3g22160	821780	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBV	O.I.	C.G.	H.G.
15.6	99.5	118.3	At1g25560	839143	TEM1 (TEMPRANILLO 1)	Encodes a member of the RAV transcription factor family that contains AP2 and B3 binding domains. Involved in the regulation of flowering under long days. Loss of function results in early flowering. Overexpression causes late flowering and repression of expression of FT.	O.I.	C.G.	H.G.
15.5	99.5	196.7	At2g43570	818959	chitinase, putative	F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMV	O.I.	C.G.	H.G.
15.4	99.5	35.8	At1g53030	841736	cytochrome c oxidase copper chaperone family protein	encodes a copper chaperone, can functional complements the yeast COX17 null mutant. May play a role in the delivery of copper to mitochondria. Expressed in roots and thus may also play a role in copper transport in the roots.	O.I.	C.G.	H.G.
14.5	99.4	65.3	At2g28400	817388	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
14.5	99.4	46.6	At5g50720	835144	ATHVA22E	Encodes one of five HVA22 homologs in Arabidopsis. HVA22 is an ABA- and stress-inducible gene first isolated from barley. Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress, salt stress, ABA treatment or dehydration.	O.I.	C.G.	H.G.
14.4	99.4	64.5	At3g22530	821824	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
14.1	99.4	53.5	At3g60540	825225	sec61beta family protein	F:protein transporter activity;P:protein transport;C:unknown;MFPO	O.I.	C.G.	H.G.
14.1	99.4	17.3	At3g25870	822182	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.0	99.4	214.4	At2g26020	817143	PDF1.2b (plant defensin 1.2b)	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
13.8	99.4	21.5	At4g11370	826739	RHA1A	Encodes a putative RING-H2 finger protein RHA1a.	O.I.	C.G.	H.G.
13.5	99.4	38.3	At5g50335	835100	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.4	99.4	62.1	At5g39670	833963	calcium-binding EF hand family protein	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOB	O.I.	C.G.	H.G.
13.3	99.4	42.3	At3g60520	825223	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.3	99.4	33.5	At1g02470	837812	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOP	O.I.	C.G.	H.G.
12.9	99.3	50.0	At2g27580	817304	zinc finger (AN1-like) family protein	F:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVF	O.I.	C.G.	H.G.
12.9	99.3	33.9	At1g75810	843914	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
12.8	99.3	165.4	At5g10380	830902	RING1	Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators.	O.I.	C.G.	H.G.
12.8	99.3	92.7	At3g14430	820666	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:mitochondrion;P	O.I.	C.G.	H.G.
12.5	99.3	62.3	At5g16450	831506	dimethylmenaquinone methyltransferase family protein	F:ribonuclease inhibitor activity;P:regulation of RNA metabolic process;C:cellular_component unknown;BOPAFM	O.I.	C.G.	H.G.
12.4	99.3	290.1	At3g57260	824893	BGL2 (BETA-1,3-GLUCANASE 2)	beta 1,3-glucanase	O.I.	C.G.	H.G.
12.2	99.3	85.1	At2g27830	817330	-	F:molecular_function unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
12.0	99.3	32.9	At2g35820	818155	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
11.8	99.3	32.2	At5g62900	836410	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.7	99.3	190.9	At1g18210	838401	calcium-binding protein, putative	F:calcium ion binding;P:biological_process unknown;C:plasma membrane, vacuole;MFPOB	O.I.	C.G.	H.G.
11.5	99.3	45.2	At2g32680	817828	AtRLP23 (Receptor Like Protein 23)	F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
11.3	99.3	76.1	At4g34760	829628	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
11.3	99.3	34.9	At2g35290	818096	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
11.1	99.2	31.0	At1g73790	843714	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
11.0	99.2	335.3	At3g04720	819632	PR4 (PATHOGENESIS-RELATED 4)	Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection.	O.I.	C.G.	H.G.
10.9	99.2	120.7	At1g63840	842687	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:response to abscisic acid stimulus;C:endomembrane system;PMOFV	O.I.	C.G.	H.G.
10.9	99.2	68.4	At4g19390	827680	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPA	O.I.	C.G.	H.G.
10.9	99.2	48.1	At2g21180	816653	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.8	99.2	238.3	At5g67600	836896	unknown protein	F:unknown;P:unknown;C:plasma membrane;MOPFBV	O.I.	C.G.	H.G.
10.8	99.2	48.5	At3g46900	823843	COPT2	encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast	O.I.	C.G.	H.G.
10.7	99.2	86.3	At3g51660	824329	macrophage migration inhibitory factor family protein / MIF family protein	F:molecular_function unknown;P:inflammatory response, response to other organism;C:peroxisome;MPOB	O.I.	C.G.	H.G.
10.6	99.2	65.1	At1g48320	841252	thioesterase family protein	F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPM	O.I.	C.G.	H.G.
10.3	99.2	113.6	At3g16570	820907	RALFL23 (ralf-like 23)	Encodes RALF23, a member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. RALF23 is significantly downregulated by brassinolide treatment of seedlings. Overexpression of AtRALF23 impairs brassinolide-induced hypocotyls elongation, and mature overexpressing plants are shorter and bushier. RALF23 overexpression produces slower growing seedlings with roots that have reduced capacity to acidify the rhizosphere.	O.I.	C.G.	H.G.
10.2	99.2	329.7	At2g46600	819272	calcium-binding protein, putative	F:calcium ion binding;P:unknown;C:cellular_component unknown;MPOFB	O.I.	C.G.	H.G.
10.2	99.2	14.6	At1g75580	843893	auxin-responsive protein, putative	F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
10.1	99.2	45.5	At4g33960	829542	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
10.1	99.2	22.4	At1g06160	837125	ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	O.I.	C.G.	H.G.
10.0	99.2	71.2	At1g56060	842057	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
10.0	99.2	56.9	At2g05630	815112	autophagy 8d (APG8d)	in the Arabidopsis autophagy pathway	O.I.	C.G.	H.G.
10.0	99.2	30.4	At5g41400	834142	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
9.9	99.1	72.1	At5g52750	835352	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOM	O.I.	C.G.	H.G.
9.9	99.1	58.7	At3g60690	825240	auxin-responsive family protein	F:unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
9.8	99.1	191.0	At5g10760	830943	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFO	O.I.	C.G.	H.G.
9.7	99.1	48.0	At3g13950	820608	unknown protein	F:molecular_function unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
9.6	99.1	100.7	At1g31130	839998	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOA	O.I.	C.G.	H.G.
9.6	99.1	33.7	At3g55470	824713	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
9.5	99.1	257.4	At3g22600	821832	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;POM	O.I.	C.G.	H.G.
9.5	99.1	41.1	At1g66760	842994	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:response to wounding;C:membrane;BOPFMA	O.I.	C.G.	H.G.
9.5	99.1	24.4	At3g01170	820469	structural constituent of ribosome	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, chloroplast;P	O.I.	C.G.	H.G.
9.4	99.1	115.8	At1g71950	843526	identical protein binding / serine-type endopeptidase	F:identical protein binding, serine-type endopeptidase activity;P:negative regulation of catalytic activity;C:plasma membrane;P	O.I.	C.G.	H.G.
9.4	99.1	110.8	At3g13720	820581	PRA8	F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;POMF	O.I.	C.G.	H.G.
9.3	99.1	104.7	At5g03455	831832	CDC25	Encodes a homolog of yeast cell cycle regulator CDC25. It has a sole catalytic domain and devoid of the N-terminal regulatory region found in the human CDC25 and is capable of reducing the mitotic cell length of transformed fission yeast. Non-plant CDC25 proteins have been shown to do this. However, the gene is more or less constant, regardless of whether the tissue examined contained proliferative cells. Also described as having arsenate reductase activity involved in arsenate resistance.	O.I.	C.G.	H.G.
9.3	99.1	30.6	At4g05590	825927	unknown protein	F:unknown;P:biological_process unknown;C:mitochondrion;MFPO	O.I.	C.G.	H.G.
9.2	99.1	28.7	At4g04800	825817	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	F:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:nucleus;OBMPFAV	O.I.	C.G.	H.G.
9.1	99.1	147.3	At3g03990	819554	esterase/lipase/thioesterase family protein	F:catalytic activity;P:unknown;C:unknown;BOPMFA	O.I.	C.G.	H.G.

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GSM ID	GSM157318
Assay name	Hammond_3-8_Potassium-starved-shoot_Rep2_ATH1
GSE experiment	GSE6825: Differential gene expression patterns in potassium-starved and Caesium-treated plants

Microarray experiments to specifically-expressed genes

GSM ID GSM157318 Assay name Hammond_3-8_Potassium-starved-shoot_Rep2_ATH1 GSE experiment GSE6825: Differential gene expression patterns in potassium-starved and Caesium-treated plants

GSM ID GSM157318

Assay name Hammond_3-8_Potassium-starved-shoot_Rep2_ATH1

GSE experiment GSE6825: Differential gene expression patterns in potassium-starved and Caesium-treated plants