Microarray experiments to specifically-expressed genes

GSM ID GSM157318
Assay name Hammond_3-8_Potassium-starved-shoot_Rep2_ATH1
GSE experiment GSE6825: Differential gene expression patterns in potassium-starved and Caesium-treated plants

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
112.599.998.2At1g16510838221auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
92.899.9126.0At3g50770824241calmodulin-related protein, putativeF:calcium ion binding;P:biological_process unknown;C:chloroplast;MFPOBO.I.C.G.H.G.
65.199.877.1At1g58420842211-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
55.799.857.9At4g37290829883unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
52.399.860.8At3g12830820465auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
46.499.8272.1At4g19200827660proline-rich family proteinF:unknown;P:unknown;C:unknown;MBPFOVAO.I.C.G.H.G.
42.799.8134.2At4g18280827554glycine-rich cell wall protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.C.G.H.G.
42.699.868.5At2g12290815700-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
41.499.835.0At1g72240843556unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
39.099.8217.3At2g18660816381EXLB3 (EXPANSIN-LIKE B3 PRECURSOR)Encodes PNP-A (Plant Natriuretic Peptide A). PNPs are a class of systemically mobile molecules distantly related to expansins; their biological role has remained elusive. PNP-A contains a signal peptide domain and is secreted into the extracellular space. Co-expression analyses using microarray data suggest that PNP-A may function as a component of plant defence response and SAR in particular, and could be classified as a newly identified PR protein.O.I.C.G.H.G.
33.999.717.4At5g45630834603unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
33.799.756.6At3g10190820181calmodulin, putativeF:calcium ion binding;P:biological_process unknown;C:plasma membrane;MPFOBO.I.C.G.H.G.
32.999.735.0At1g20350838623ATTIM17-1mitochondrial inner membrane translocaseO.I.C.G.H.G.
32.199.7158.6At3g51860824349CAX3 (CATION EXCHANGER 3)F:cation:cation antiporter activity, calcium:cation antiporter activity, calcium:hydrogen antiporter activity;P:in 9 processes;C:plant-type vacuole membrane, vacuolar membrane, vacuole;BFOPAMO.I.C.G.H.G.
31.999.751.5At3g04000819555short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
27.499.773.8At3g47480823902calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOBO.I.C.G.H.G.
27.099.756.0At4g25000828603AMY1 (ALPHA-AMYLASE-LIKE)Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830).O.I.C.G.H.G.
25.899.7251.4At1g65490842861unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
24.999.6171.6At1g55210841964disease resistance responseF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
24.499.646.8At1g56150842068auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
24.199.671.2At4g38860830041auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
23.499.6101.1At2g43290818931MSS3 (multicopy suppressors of snf4 deficiency in yeast 3)Encodes calmodulin-like MSS3.O.I.C.G.H.G.
23.499.631.1At4g23880828487unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFO.I.C.G.H.G.
21.899.616.4At5g44210834444ERF9 (ERF DOMAIN PROTEIN 9)encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-9). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.O.I.C.G.H.G.
21.599.6243.5At2g43510818952ATTI1Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory.O.I.C.G.H.G.
20.099.689.4At1g50290841451unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:cytosol;PO.I.C.G.H.G.
19.899.636.2At1g78410844177VQ motif-containing proteinF:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;PO.I.C.G.H.G.
19.599.640.1At1g05000839348tyrosine specific protein phosphatase family proteinF:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FPOBMO.I.C.G.H.G.
19.099.523.6At2g28710817420zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMOO.I.C.G.H.G.
18.999.5345.9At2g41410818739calmodulin, putativeF:calcium ion binding;P:unknown;C:plasma membrane;MPFOBO.I.C.G.H.G.
18.699.585.1At2g29350817484SAG13senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenaseO.I.C.G.H.G.
18.499.568.4At1g215253766777-pseudogene of unknown proteinO.I.C.G.H.G.
18.099.553.0At1g03730839106unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
17.899.593.6At1g52720841705unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
16.499.551.2At4g37150829869MES9 (METHYL ESTERASE 9)Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES9 appears to be involved in MeSA hydrolysis in planta. Expression of MES9 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
16.399.561.4At2g24040816938hydrophobic protein, putative / low temperature and salt responsive protein, putativeF:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;PFBMOO.I.C.G.H.G.
16.399.531.5At5g64000836521SAL23'(2'),5'-bisphosphate nucleotidaseO.I.C.G.H.G.
16.299.521.4At4g01130828207acetylesterase, putativeF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
16.099.5373.2At1g75040843842PR5 (PATHOGENESIS-RELATED GENE 5)Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment.O.I.C.G.H.G.
15.999.545.0At1g62420842540unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
15.899.555.1At3g22160821780VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBVO.I.C.G.H.G.
15.699.5118.3At1g25560839143TEM1 (TEMPRANILLO 1)Encodes a member of the RAV transcription factor family that contains AP2 and B3 binding domains. Involved in the regulation of flowering under long days. Loss of function results in early flowering. Overexpression causes late flowering and repression of expression of FT.O.I.C.G.H.G.
15.599.5196.7At2g43570818959chitinase, putativeF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMVO.I.C.G.H.G.
15.499.535.8At1g53030841736cytochrome c oxidase copper chaperone family proteinencodes a copper chaperone, can functional complements the yeast COX17 null mutant. May play a role in the delivery of copper to mitochondria. Expressed in roots and thus may also play a role in copper transport in the roots.O.I.C.G.H.G.
14.599.465.3At2g28400817388unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
14.599.446.6At5g50720835144ATHVA22EEncodes one of five HVA22 homologs in Arabidopsis. HVA22 is an ABA- and stress-inducible gene first isolated from barley. Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress, salt stress, ABA treatment or dehydration.O.I.C.G.H.G.
14.499.464.5At3g22530821824unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
14.199.453.5At3g60540825225sec61beta family proteinF:protein transporter activity;P:protein transport;C:unknown;MFPOO.I.C.G.H.G.
14.199.417.3At3g25870822182unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.099.4214.4At2g26020817143PDF1.2b (plant defensin 1.2b)Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
13.899.421.5At4g11370826739RHA1AEncodes a putative RING-H2 finger protein RHA1a.O.I.C.G.H.G.
13.599.438.3At5g50335835100unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.499.462.1At5g39670833963calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOBO.I.C.G.H.G.
13.399.442.3At3g60520825223unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.399.433.5At1g02470837812-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPO.I.C.G.H.G.
12.999.350.0At2g27580817304zinc finger (AN1-like) family proteinF:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVFO.I.C.G.H.G.
12.999.333.9At1g75810843914unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
12.899.3165.4At5g10380830902RING1Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators.O.I.C.G.H.G.
12.899.392.7At3g14430820666unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:mitochondrion;PO.I.C.G.H.G.
12.599.362.3At5g16450831506dimethylmenaquinone methyltransferase family proteinF:ribonuclease inhibitor activity;P:regulation of RNA metabolic process;C:cellular_component unknown;BOPAFMO.I.C.G.H.G.
12.499.3290.1At3g57260824893BGL2 (BETA-1,3-GLUCANASE 2)beta 1,3-glucanaseO.I.C.G.H.G.
12.299.385.1At2g27830817330-F:molecular_function unknown;P:unknown;C:unknown;PO.I.C.G.H.G.
12.099.332.9At2g35820818155unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOO.I.C.G.H.G.
11.899.332.2At5g62900836410unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
11.799.3190.9At1g18210838401calcium-binding protein, putativeF:calcium ion binding;P:biological_process unknown;C:plasma membrane, vacuole;MFPOBO.I.C.G.H.G.
11.599.345.2At2g32680817828AtRLP23 (Receptor Like Protein 23)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
11.399.376.1At4g34760829628auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POO.I.C.G.H.G.
11.399.334.9At2g35290818096unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
11.199.231.0At1g73790843714unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
11.099.2335.3At3g04720819632PR4 (PATHOGENESIS-RELATED 4)Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection.O.I.C.G.H.G.
10.999.2120.7At1g63840842687zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:response to abscisic acid stimulus;C:endomembrane system;PMOFVO.I.C.G.H.G.
10.999.268.4At4g19390827680-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPAO.I.C.G.H.G.
10.999.248.1At2g21180816653unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.899.2238.3At5g67600836896unknown proteinF:unknown;P:unknown;C:plasma membrane;MOPFBVO.I.C.G.H.G.
10.899.248.5At3g46900823843COPT2encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeastO.I.C.G.H.G.
10.799.286.3At3g51660824329macrophage migration inhibitory factor family protein / MIF family proteinF:molecular_function unknown;P:inflammatory response, response to other organism;C:peroxisome;MPOBO.I.C.G.H.G.
10.699.265.1At1g48320841252thioesterase family proteinF:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPMO.I.C.G.H.G.
10.399.2113.6At3g16570820907RALFL23 (ralf-like 23)Encodes RALF23, a member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. RALF23 is significantly downregulated by brassinolide treatment of seedlings. Overexpression of AtRALF23 impairs brassinolide-induced hypocotyls elongation, and mature overexpressing plants are shorter and bushier. RALF23 overexpression produces slower growing seedlings with roots that have reduced capacity to acidify the rhizosphere.O.I.C.G.H.G.
10.299.2329.7At2g46600819272calcium-binding protein, putativeF:calcium ion binding;P:unknown;C:cellular_component unknown;MPOFBO.I.C.G.H.G.
10.299.214.6At1g75580843893auxin-responsive protein, putativeF:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;POO.I.C.G.H.G.
10.199.245.5At4g33960829542unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
10.199.222.4At1g06160837125ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.O.I.C.G.H.G.
10.099.271.2At1g56060842057unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
10.099.256.9At2g05630815112autophagy 8d (APG8d)in the Arabidopsis autophagy pathwayO.I.C.G.H.G.
10.099.230.4At5g41400834142zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBO.I.C.G.H.G.
9.999.172.1At5g52750835352heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMO.I.C.G.H.G.
9.999.158.7At3g60690825240auxin-responsive family proteinF:unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
9.899.1191.0At5g10760830943aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFOO.I.C.G.H.G.
9.799.148.0At3g13950820608unknown proteinF:molecular_function unknown;P:unknown;C:unknown;PO.I.C.G.H.G.
9.699.1100.7At1g31130839998unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOAO.I.C.G.H.G.
9.699.133.7At3g55470824713C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.C.G.H.G.
9.599.1257.4At3g22600821832protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;POMO.I.C.G.H.G.
9.599.141.1At1g66760842994MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:response to wounding;C:membrane;BOPFMAO.I.C.G.H.G.
9.599.124.4At3g01170820469structural constituent of ribosomeF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, chloroplast;PO.I.C.G.H.G.
9.499.1115.8At1g71950843526identical protein binding / serine-type endopeptidaseF:identical protein binding, serine-type endopeptidase activity;P:negative regulation of catalytic activity;C:plasma membrane;PO.I.C.G.H.G.
9.499.1110.8At3g13720820581PRA8F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;POMFO.I.C.G.H.G.
9.399.1104.7At5g03455831832CDC25Encodes a homolog of yeast cell cycle regulator CDC25. It has a sole catalytic domain and devoid of the N-terminal regulatory region found in the human CDC25 and is capable of reducing the mitotic cell length of transformed fission yeast. Non-plant CDC25 proteins have been shown to do this. However, the gene is more or less constant, regardless of whether the tissue examined contained proliferative cells. Also described as having arsenate reductase activity involved in arsenate resistance.O.I.C.G.H.G.
9.399.130.6At4g05590825927unknown proteinF:unknown;P:biological_process unknown;C:mitochondrion;MFPOO.I.C.G.H.G.
9.299.128.7At4g04800825817methionine sulfoxide reductase domain-containing protein / SeIR domain-containing proteinF:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:nucleus;OBMPFAVO.I.C.G.H.G.
9.199.1147.3At3g03990819554esterase/lipase/thioesterase family proteinF:catalytic activity;P:unknown;C:unknown;BOPMFAO.I.C.G.H.G.



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