CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM157314

Assay name Hammond_3-4_Control-root_Rep1_ATH1

GSE experiment GSE6825: Differential gene expression patterns in potassium-starved and Caesium-treated plants

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
310.3 100.0 290.5 At3g29410 822602 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PO O.I. C.G. H.G.
303.5 100.0 136.4 At4g08380 826395 proline-rich extensin-like family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFOBVA O.I. C.G. H.G.
187.9 100.0 66.0 At3g02850 821052 SKOR member of Stelar K+ outward rectifying channel (SKOR) family. Mediates the delivery of K+ from stelar cells to the xylem in the roots towards the shoot. mRNA accumulation is modulated by abscisic acid. K+ gating activity is modulated by external and internal K+. O.I. C.G. H.G.
155.9 99.9 47.4 At4g10520 826644 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM O.I. C.G. H.G.
113.4 99.9 47.4 At1g53640 841800 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFOBV O.I. C.G. H.G.
103.5 99.9 89.9 At5g59680 836089 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
91.6 99.9 240.2 At5g19890 832111 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:nucleus, cytoplasm;PFOB O.I. C.G. H.G.
89.4 99.9 66.4 At4g18510 827583 CLE2 (CLAVATA3/ESR-RELATED) CLE2, putative ligand, member of large gene family homologous to Clavata3 O.I. C.G. H.G.
80.0 99.9 27.8 At2g31085 817664 CLE6 (CLAVATA3/ESR-RELATED 6) Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can replace CLV3 function in vivo. O.I. C.G. H.G.
78.3 99.9 140.6 At3g03670 821193 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOB O.I. C.G. H.G.
66.8 99.8 22.9 At2g34180 817979 CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) Encodes CBL-interacting protein kinase 13 (CIPK13). O.I. C.G. H.G.
63.1 99.8 33.7 At3g60270 825198 uclacyanin, putative F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBVFMA O.I. C.G. H.G.
61.2 99.8 42.4 At5g49770 835040 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
59.7 99.8 22.4 At2g02580 814788 CYP71B9 member of CYP71B O.I. C.G. H.G.
58.2 99.8 91.5 At3g28550 822485 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPFBOVA O.I. C.G. H.G.
57.3 99.8 50.0 At1g53680 841805 ATGSTU28 (GLUTATHIONE S-TRANSFERASE TAU 28) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
53.3 99.8 41.1 At3g47040 823857 glycosyl hydrolase family 3 protein F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cellular_component unknown;BOFPAM O.I. C.G. H.G.
53.3 99.8 24.1 At1g72590 843591 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein F:oxidoreductase activity, acting on the CH-CH group of donors, 3-oxo-5-alpha-steroid 4-dehydrogenase activity;P:lipid metabolic process;C:endomembrane system, integral to membrane, cytoplasm;MOFPB O.I. C.G. H.G.
51.1 99.8 61.0 At4g13290 826959 CYP71A19 putative cytochrome P450 O.I. C.G. H.G.
50.3 99.8 49.5 At1g22030 838808 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
49.6 99.8 14.9 At3g29430 822604 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative F:unknown;P:isoprenoid biosynthetic process;C:unknown;OBFPMAV O.I. C.G. H.G.
49.3 99.8 107.3 At5g28630 832966 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA O.I. C.G. H.G.
48.6 99.8 53.0 At4g08620 826426 SULTR1 High affinity sulfate transporter. Contains STAS domain, essential for sulfur uptake function. Expressed in roots and guard cells. Up-regulated by sulfur deficiency. Down-regulated by cytokinin. Localized to the plasma membrane. O.I. C.G. H.G.
45.3 99.8 33.8 At4g15400 827208 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
44.9 99.8 37.2 At5g52670 835344 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P O.I. C.G. H.G.
44.8 99.8 91.4 At3g05950 819765 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFBO O.I. C.G. H.G.
44.2 99.8 14.2 At5g19040 832023 IPT5 Encodes cytokinin synthase. O.I. C.G. H.G.
43.5 99.8 14.4 At1g27620 839654 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
42.0 99.8 28.1 At2g45550 819163 CYP76C4 member of CYP76C O.I. C.G. H.G.
40.9 99.8 34.4 At3g59370 825106 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
40.6 99.8 278.0 At1g26250 839166 proline-rich extensin, putative F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
39.8 99.8 54.2 At3g49860 824148 ATARLA1B (ADP-ribosylation factor-like A1B) A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. O.I. C.G. H.G.
38.7 99.8 37.6 At3g27150 822334 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA O.I. C.G. H.G.
38.5 99.8 27.4 At5g52790 835356 CBS domain-containing protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPA O.I. C.G. H.G.
36.9 99.7 150.0 At4g11290 826731 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
36.2 99.7 45.2 At1g26240 839165 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
35.9 99.7 34.0 At1g62280 842525 SLAH1 (SLAC1 HOMOLOGUE 1) Encodes a protein with ten predicted transmembrane helices. The SLAH1 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. Although it is not expressed in guard cells, it can complement a slac1-2 mutant suggesting that it performs a similar function. SLAH1:GFP localizes to the plasma membrane. O.I. C.G. H.G.
35.7 99.7 154.3 At4g08770 826447 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:vacuole;POF O.I. C.G. H.G.
35.7 99.7 48.9 At5g10210 830885 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
35.0 99.7 41.3 At5g38540 833842 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
34.6 99.7 60.7 At3g01260 821171 aldose 1-epimerase/ carbohydrate binding / catalytic/ isomerase F:carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVA O.I. C.G. H.G.
33.3 99.7 61.8 At4g08780 826448 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:vacuole;POFM O.I. C.G. H.G.
33.0 99.7 69.9 At3g51330 824296 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOBV O.I. C.G. H.G.
33.0 99.7 37.1 At5g19970 832119 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
32.6 99.7 17.8 At2g29220 817471 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOFBVA O.I. C.G. H.G.
31.8 99.7 56.9 At5g03570 831787 ATIREG2 (IRON-REGULATED PROTEIN 2) Encodes a tonoplast localized nickel transport protein. O.I. C.G. H.G.
31.6 99.7 11.0 At3g29635 822634 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PFO O.I. C.G. H.G.
31.4 99.7 26.4 At2g28960 817445 leucine-rich repeat protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
31.3 99.7 16.5 At4g15270 827193 glucosyltransferase-related F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;P O.I. C.G. H.G.
30.9 99.7 222.1 At1g15380 838107 lactoylglutathione lyase family protein / glyoxalase I family protein F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BPOMFA O.I. C.G. H.G.
30.8 99.7 237.7 At4g39675 830122 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
30.8 99.7 64.5 At2g29660 817516 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:anchored to membrane;PFO O.I. C.G. H.G.
30.7 99.7 51.9 At1g61667 842463 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
30.7 99.7 51.5 At5g63590 836478 FLS3 (FLAVONOL SYNTHASE 3) F:flavonol synthase activity;P:response to light stimulus, response to sucrose stimulus, flavonoid biosynthetic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
30.6 99.7 24.6 At1g64480 842756 CBL8 (CALCINEURIN B-LIKE PROTEIN 8) calcineurin B-like protein 8, member of plant-specific family of calcium sensor proteins containing 3 EF-hand motifs O.I. C.G. H.G.
30.3 99.7 21.1 At4g15380 827204 CYP705A4 member of CYP705A O.I. C.G. H.G.
29.8 99.7 151.5 At4g14630 827113 GLP9 (GERMIN-LIKE PROTEIN 9) germin-like protein with N-terminal signal sequence that may target it to the vacuole, plasma membrane and/or outside the cell. O.I. C.G. H.G.
29.6 99.7 16.2 At3g18450 821374 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
29.4 99.7 25.9 At1g24430 839059 transferase/ transferase, transferring acyl groups other than amino-acyl groups F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PF O.I. C.G. H.G.
29.3 99.7 66.4 At1g33800 840272 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB O.I. C.G. H.G.
28.5 99.7 27.5 At5g06800 830570 myb family transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;POFM O.I. C.G. H.G.
28.3 99.7 53.4 At3g58810 825050 MTPA2 (METAL TOLERANCE PROTEIN A2) Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane. O.I. C.G. H.G.
27.9 99.7 50.4 At5g07080 830599 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
27.7 99.7 27.6 At3g22800 821851 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
27.6 99.7 31.7 At1g15640 838134 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
27.2 99.7 157.8 At5g07460 830637 PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2) ubiquitous enzyme that repairs oxidatively damaged proteins. Methionine sulfoxide reductase activity. Mutant lacking reductase activity showed increased protein oxidation, nitration and glycation of specific amino acid residues during darkness. O.I. C.G. H.G.
26.9 99.7 8.5 At5g10530 830918 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
26.8 99.7 21.7 At1g71692 843497 AGL12 (AGAMOUS-LIKE 12) Encodes a member of the MADS box family of transcription factors. Involved in root cell differentiation and flowering time. Loss of function mutations have abnormal cellular differentiation in the roots and are late flowering. AGL12 along with AGL14, and AGL17 is preferentially expressed in root tissues and represent the only characterized MADS box genes expressed in roots. O.I. C.G. H.G.
26.3 99.7 25.4 At1g36640 840572 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
26.1 99.7 22.2 At3g46270 823772 receptor protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPBOFVA O.I. C.G. H.G.
26.0 99.7 35.1 At3g13760 820585 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:membrane;PMO O.I. C.G. H.G.
26.0 99.7 25.5 At3g51350 824298 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOBAV O.I. C.G. H.G.
25.9 99.7 44.2 At3g47210 823874 unknown protein F:unknown;P:biological_process unknown;C:plasma membrane;PM O.I. C.G. H.G.
25.8 99.7 57.7 At4g21600 828246 ENDO5 (endonuclease 5) Encodes a protein with mismatch-specific endonuclease activity with a preference for T/G, A/G, and G/G of single base mismatches. It also has the ability to cleave indel types of mismatches (heteroduplexes with loops). O.I. C.G. H.G.
25.4 99.6 43.2 At5g24410 832512 glucosamine/galactosamine-6-phosphate isomerase-related F:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFP O.I. C.G. H.G.
25.3 99.6 110.7 At2g46690 819281 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
25.3 99.6 7.1 At3g53820 824549 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:mitochondrion, intracellular;PMO O.I. C.G. H.G.
25.1 99.6 63.8 At2g29750 817525 UGT71C1 (UDP-GLUCOSYL TRANSFERASE 71C1) F:quercetin 3'-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVF O.I. C.G. H.G.
25.0 99.6 70.4 At5g11920 831065 AtcwINV6 (6-&1-fructan exohydrolase) Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity. O.I. C.G. H.G.
24.9 99.6 59.1 At5g15180 831370 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
24.9 99.6 30.8 At4g28890 829010 protein binding / ubiquitin-protein ligase/ zinc ion binding F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
24.5 99.6 126.0 At1g23720 838982 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MBFOPVA O.I. C.G. H.G.
24.5 99.6 16.5 At1g49030 841326 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
24.3 99.6 20.2 At5g49780 835041 ATP binding / kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
24.1 99.6 66.0 At4g17800 827502 DNA-binding protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PBMOF O.I. C.G. H.G.
24.1 99.6 13.1 At4g38830 830038 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
24.1 99.6 5.7 At1g03010 839556 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:unknown;PM O.I. C.G. H.G.
24.0 99.6 248.2 At5g47450 834794 AtTIP2 Tonoplast intrinsic protein, transports ammonium (NH3) and methylammonium across the tonoplast membrane, gene expression shows diurnal regulation and is upregulated by ammonium (NH3). O.I. C.G. H.G.
23.8 99.6 23.6 At4g25090 828612 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA O.I. C.G. H.G.
23.7 99.6 19.3 At4g40070 830170 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
23.7 99.6 14.5 At4g11230 826725 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 6 functions;P:oxidation reduction;C:integral to membrane, membrane;MFPBOA O.I. C.G. H.G.
23.3 99.6 92.0 At1g13300 837890 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POVBMF O.I. C.G. H.G.
23.3 99.6 64.4 At3g20015 821540 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO O.I. C.G. H.G.
22.9 99.6 8.0 At4g27290 828837 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding F:sugar binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
22.7 99.6 66.2 At2g41480 818746 electron carrier/ heme binding / peroxidase F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;POFBM O.I. C.G. H.G.
22.7 99.6 36.9 At2g29330 817482 TRI (tropinone reductase) F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
22.6 99.6 253.2 At4g33720 829514 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB O.I. C.G. H.G.
22.6 99.6 18.2 At4g10550 826647 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM O.I. C.G. H.G.
22.1 99.6 75.4 At3g06390 819813 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
21.8 99.6 29.4 At2g28780 817427 unknown protein F:unknown;P:biological_process unknown;C:mitochondrion;BPO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
310.3	100.0	290.5	At3g29410	822602	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PO	O.I.	C.G.	H.G.
303.5	100.0	136.4	At4g08380	826395	proline-rich extensin-like family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFOBVA	O.I.	C.G.	H.G.
187.9	100.0	66.0	At3g02850	821052	SKOR	member of Stelar K+ outward rectifying channel (SKOR) family. Mediates the delivery of K+ from stelar cells to the xylem in the roots towards the shoot. mRNA accumulation is modulated by abscisic acid. K+ gating activity is modulated by external and internal K+.	O.I.	C.G.	H.G.
155.9	99.9	47.4	At4g10520	826644	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM	O.I.	C.G.	H.G.
113.4	99.9	47.4	At1g53640	841800	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFOBV	O.I.	C.G.	H.G.
103.5	99.9	89.9	At5g59680	836089	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
91.6	99.9	240.2	At5g19890	832111	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:nucleus, cytoplasm;PFOB	O.I.	C.G.	H.G.
89.4	99.9	66.4	At4g18510	827583	CLE2 (CLAVATA3/ESR-RELATED)	CLE2, putative ligand, member of large gene family homologous to Clavata3	O.I.	C.G.	H.G.
80.0	99.9	27.8	At2g31085	817664	CLE6 (CLAVATA3/ESR-RELATED 6)	Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can replace CLV3 function in vivo.	O.I.	C.G.	H.G.
78.3	99.9	140.6	At3g03670	821193	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOB	O.I.	C.G.	H.G.
66.8	99.8	22.9	At2g34180	817979	CIPK13 (CBL-INTERACTING PROTEIN KINASE 13)	Encodes CBL-interacting protein kinase 13 (CIPK13).	O.I.	C.G.	H.G.
63.1	99.8	33.7	At3g60270	825198	uclacyanin, putative	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBVFMA	O.I.	C.G.	H.G.
61.2	99.8	42.4	At5g49770	835040	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
59.7	99.8	22.4	At2g02580	814788	CYP71B9	member of CYP71B	O.I.	C.G.	H.G.
58.2	99.8	91.5	At3g28550	822485	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPFBOVA	O.I.	C.G.	H.G.
57.3	99.8	50.0	At1g53680	841805	ATGSTU28 (GLUTATHIONE S-TRANSFERASE TAU 28)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
53.3	99.8	41.1	At3g47040	823857	glycosyl hydrolase family 3 protein	F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cellular_component unknown;BOFPAM	O.I.	C.G.	H.G.
53.3	99.8	24.1	At1g72590	843591	3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein	F:oxidoreductase activity, acting on the CH-CH group of donors, 3-oxo-5-alpha-steroid 4-dehydrogenase activity;P:lipid metabolic process;C:endomembrane system, integral to membrane, cytoplasm;MOFPB	O.I.	C.G.	H.G.
51.1	99.8	61.0	At4g13290	826959	CYP71A19	putative cytochrome P450	O.I.	C.G.	H.G.
50.3	99.8	49.5	At1g22030	838808	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
49.6	99.8	14.9	At3g29430	822604	geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative	F:unknown;P:isoprenoid biosynthetic process;C:unknown;OBFPMAV	O.I.	C.G.	H.G.
49.3	99.8	107.3	At5g28630	832966	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA	O.I.	C.G.	H.G.
48.6	99.8	53.0	At4g08620	826426	SULTR1	High affinity sulfate transporter. Contains STAS domain, essential for sulfur uptake function. Expressed in roots and guard cells. Up-regulated by sulfur deficiency. Down-regulated by cytokinin. Localized to the plasma membrane.	O.I.	C.G.	H.G.
45.3	99.8	33.8	At4g15400	827208	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
44.9	99.8	37.2	At5g52670	835344	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P	O.I.	C.G.	H.G.
44.8	99.8	91.4	At3g05950	819765	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFBO	O.I.	C.G.	H.G.
44.2	99.8	14.2	At5g19040	832023	IPT5	Encodes cytokinin synthase.	O.I.	C.G.	H.G.
43.5	99.8	14.4	At1g27620	839654	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
42.0	99.8	28.1	At2g45550	819163	CYP76C4	member of CYP76C	O.I.	C.G.	H.G.
40.9	99.8	34.4	At3g59370	825106	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
40.6	99.8	278.0	At1g26250	839166	proline-rich extensin, putative	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
39.8	99.8	54.2	At3g49860	824148	ATARLA1B (ADP-ribosylation factor-like A1B)	A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.	O.I.	C.G.	H.G.
38.7	99.8	37.6	At3g27150	822334	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA	O.I.	C.G.	H.G.
38.5	99.8	27.4	At5g52790	835356	CBS domain-containing protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPA	O.I.	C.G.	H.G.
36.9	99.7	150.0	At4g11290	826731	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
36.2	99.7	45.2	At1g26240	839165	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
35.9	99.7	34.0	At1g62280	842525	SLAH1 (SLAC1 HOMOLOGUE 1)	Encodes a protein with ten predicted transmembrane helices. The SLAH1 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. Although it is not expressed in guard cells, it can complement a slac1-2 mutant suggesting that it performs a similar function. SLAH1:GFP localizes to the plasma membrane.	O.I.	C.G.	H.G.
35.7	99.7	154.3	At4g08770	826447	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:vacuole;POF	O.I.	C.G.	H.G.
35.7	99.7	48.9	At5g10210	830885	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
35.0	99.7	41.3	At5g38540	833842	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
34.6	99.7	60.7	At3g01260	821171	aldose 1-epimerase/ carbohydrate binding / catalytic/ isomerase	F:carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVA	O.I.	C.G.	H.G.
33.3	99.7	61.8	At4g08780	826448	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:vacuole;POFM	O.I.	C.G.	H.G.
33.0	99.7	69.9	At3g51330	824296	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOBV	O.I.	C.G.	H.G.
33.0	99.7	37.1	At5g19970	832119	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
32.6	99.7	17.8	At2g29220	817471	lectin protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOFBVA	O.I.	C.G.	H.G.
31.8	99.7	56.9	At5g03570	831787	ATIREG2 (IRON-REGULATED PROTEIN 2)	Encodes a tonoplast localized nickel transport protein.	O.I.	C.G.	H.G.
31.6	99.7	11.0	At3g29635	822634	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PFO	O.I.	C.G.	H.G.
31.4	99.7	26.4	At2g28960	817445	leucine-rich repeat protein kinase, putative	F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
31.3	99.7	16.5	At4g15270	827193	glucosyltransferase-related	F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;P	O.I.	C.G.	H.G.
30.9	99.7	222.1	At1g15380	838107	lactoylglutathione lyase family protein / glyoxalase I family protein	F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BPOMFA	O.I.	C.G.	H.G.
30.8	99.7	237.7	At4g39675	830122	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
30.8	99.7	64.5	At2g29660	817516	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:anchored to membrane;PFO	O.I.	C.G.	H.G.
30.7	99.7	51.9	At1g61667	842463	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
30.7	99.7	51.5	At5g63590	836478	FLS3 (FLAVONOL SYNTHASE 3)	F:flavonol synthase activity;P:response to light stimulus, response to sucrose stimulus, flavonoid biosynthetic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
30.6	99.7	24.6	At1g64480	842756	CBL8 (CALCINEURIN B-LIKE PROTEIN 8)	calcineurin B-like protein 8, member of plant-specific family of calcium sensor proteins containing 3 EF-hand motifs	O.I.	C.G.	H.G.
30.3	99.7	21.1	At4g15380	827204	CYP705A4	member of CYP705A	O.I.	C.G.	H.G.
29.8	99.7	151.5	At4g14630	827113	GLP9 (GERMIN-LIKE PROTEIN 9)	germin-like protein with N-terminal signal sequence that may target it to the vacuole, plasma membrane and/or outside the cell.	O.I.	C.G.	H.G.
29.6	99.7	16.2	At3g18450	821374	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
29.4	99.7	25.9	At1g24430	839059	transferase/ transferase, transferring acyl groups other than amino-acyl groups	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
29.3	99.7	66.4	At1g33800	840272	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB	O.I.	C.G.	H.G.
28.5	99.7	27.5	At5g06800	830570	myb family transcription factor	F:transcription factor activity;P:regulation of transcription;C:unknown;POFM	O.I.	C.G.	H.G.
28.3	99.7	53.4	At3g58810	825050	MTPA2 (METAL TOLERANCE PROTEIN A2)	Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane.	O.I.	C.G.	H.G.
27.9	99.7	50.4	At5g07080	830599	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
27.7	99.7	27.6	At3g22800	821851	leucine-rich repeat family protein / extensin family protein	F:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
27.6	99.7	31.7	At1g15640	838134	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.2	99.7	157.8	At5g07460	830637	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	ubiquitous enzyme that repairs oxidatively damaged proteins. Methionine sulfoxide reductase activity. Mutant lacking reductase activity showed increased protein oxidation, nitration and glycation of specific amino acid residues during darkness.	O.I.	C.G.	H.G.
26.9	99.7	8.5	At5g10530	830918	lectin protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
26.8	99.7	21.7	At1g71692	843497	AGL12 (AGAMOUS-LIKE 12)	Encodes a member of the MADS box family of transcription factors. Involved in root cell differentiation and flowering time. Loss of function mutations have abnormal cellular differentiation in the roots and are late flowering. AGL12 along with AGL14, and AGL17 is preferentially expressed in root tissues and represent the only characterized MADS box genes expressed in roots.	O.I.	C.G.	H.G.
26.3	99.7	25.4	At1g36640	840572	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
26.1	99.7	22.2	At3g46270	823772	receptor protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPBOFVA	O.I.	C.G.	H.G.
26.0	99.7	35.1	At3g13760	820585	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:membrane;PMO	O.I.	C.G.	H.G.
26.0	99.7	25.5	At3g51350	824298	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOBAV	O.I.	C.G.	H.G.
25.9	99.7	44.2	At3g47210	823874	unknown protein	F:unknown;P:biological_process unknown;C:plasma membrane;PM	O.I.	C.G.	H.G.
25.8	99.7	57.7	At4g21600	828246	ENDO5 (endonuclease 5)	Encodes a protein with mismatch-specific endonuclease activity with a preference for T/G, A/G, and G/G of single base mismatches. It also has the ability to cleave indel types of mismatches (heteroduplexes with loops).	O.I.	C.G.	H.G.
25.4	99.6	43.2	At5g24410	832512	glucosamine/galactosamine-6-phosphate isomerase-related	F:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFP	O.I.	C.G.	H.G.
25.3	99.6	110.7	At2g46690	819281	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
25.3	99.6	7.1	At3g53820	824549	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:mitochondrion, intracellular;PMO	O.I.	C.G.	H.G.
25.1	99.6	63.8	At2g29750	817525	UGT71C1 (UDP-GLUCOSYL TRANSFERASE 71C1)	F:quercetin 3'-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVF	O.I.	C.G.	H.G.
25.0	99.6	70.4	At5g11920	831065	AtcwINV6 (6-&1-fructan exohydrolase)	Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity.	O.I.	C.G.	H.G.
24.9	99.6	59.1	At5g15180	831370	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
24.9	99.6	30.8	At4g28890	829010	protein binding / ubiquitin-protein ligase/ zinc ion binding	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
24.5	99.6	126.0	At1g23720	838982	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MBFOPVA	O.I.	C.G.	H.G.
24.5	99.6	16.5	At1g49030	841326	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
24.3	99.6	20.2	At5g49780	835041	ATP binding / kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
24.1	99.6	66.0	At4g17800	827502	DNA-binding protein-related	F:unknown;P:biological_process unknown;C:cellular_component unknown;PBMOF	O.I.	C.G.	H.G.
24.1	99.6	13.1	At4g38830	830038	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
24.1	99.6	5.7	At1g03010	839556	phototropic-responsive NPH3 family protein	F:protein binding, signal transducer activity;P:response to light stimulus;C:unknown;PM	O.I.	C.G.	H.G.
24.0	99.6	248.2	At5g47450	834794	AtTIP2	Tonoplast intrinsic protein, transports ammonium (NH3) and methylammonium across the tonoplast membrane, gene expression shows diurnal regulation and is upregulated by ammonium (NH3).	O.I.	C.G.	H.G.
23.8	99.6	23.6	At4g25090	828612	respiratory burst oxidase, putative / NADPH oxidase, putative	F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA	O.I.	C.G.	H.G.
23.7	99.6	19.3	At4g40070	830170	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
23.7	99.6	14.5	At4g11230	826725	respiratory burst oxidase, putative / NADPH oxidase, putative	F:in 6 functions;P:oxidation reduction;C:integral to membrane, membrane;MFPBOA	O.I.	C.G.	H.G.
23.3	99.6	92.0	At1g13300	837890	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POVBMF	O.I.	C.G.	H.G.
23.3	99.6	64.4	At3g20015	821540	aspartic-type endopeptidase	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO	O.I.	C.G.	H.G.
22.9	99.6	8.0	At4g27290	828837	ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding	F:sugar binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
22.7	99.6	66.2	At2g41480	818746	electron carrier/ heme binding / peroxidase	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;POFBM	O.I.	C.G.	H.G.
22.7	99.6	36.9	At2g29330	817482	TRI (tropinone reductase)	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
22.6	99.6	253.2	At4g33720	829514	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB	O.I.	C.G.	H.G.
22.6	99.6	18.2	At4g10550	826647	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM	O.I.	C.G.	H.G.
22.1	99.6	75.4	At3g06390	819813	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.8	99.6	29.4	At2g28780	817427	unknown protein	F:unknown;P:biological_process unknown;C:mitochondrion;BPO	O.I.	C.G.	H.G.

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GSM ID	GSM157314
Assay name	Hammond_3-4_Control-root_Rep1_ATH1
GSE experiment	GSE6825: Differential gene expression patterns in potassium-starved and Caesium-treated plants

Microarray experiments to specifically-expressed genes

GSM ID GSM157314 Assay name Hammond_3-4_Control-root_Rep1_ATH1 GSE experiment GSE6825: Differential gene expression patterns in potassium-starved and Caesium-treated plants

GSM ID GSM157314

Assay name Hammond_3-4_Control-root_Rep1_ATH1

GSE experiment GSE6825: Differential gene expression patterns in potassium-starved and Caesium-treated plants