Microarray experiments to specifically-expressed genes

GSM ID GSM157310
Assay name Gan_1-6_mutant-nitrate-continuous(ANC)_Rep1_ATH1
GSE experiment GSE6824: Identification of genes involved in nutritional regulation of root architecture

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
223.3100.0139.0At5g26130832682-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBO.I.C.G.H.G.
99.299.9158.3At3g03670821193peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOBO.I.C.G.H.G.
81.199.919.3At5g19040832023IPT5Encodes cytokinin synthase.O.I.C.G.H.G.
75.499.9108.9At2g04800815024unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
72.299.975.1At5g59680836089leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
66.699.814.0At1g63560842661-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
61.599.839.3At3g51350824298aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOBAVO.I.C.G.H.G.
60.299.860.8At4g08380826395proline-rich extensin-like family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFOBVAO.I.C.G.H.G.
59.499.841.8At5g49770835040leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
56.599.828.4At3g47980823953integral membrane HPP family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast;BOFPO.I.C.G.H.G.
55.199.846.2At1g33840840280unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
54.399.856.0At4g08620826426SULTR1High affinity sulfate transporter. Contains STAS domain, essential for sulfur uptake function. Expressed in roots and guard cells. Up-regulated by sulfur deficiency. Down-regulated by cytokinin. Localized to the plasma membrane.O.I.C.G.H.G.
54.299.873.4At1g70880843425Bet v I allergen family proteinF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
51.499.8377.7At1g08090837327ATNRT2:1 (NITRATE TRANSPORTER 2:1)High-affinity nitrate transporter. Up-regulated by nitrate. Functions as a repressor of lateral root initiation independently of nitrate uptake.O.I.C.G.H.G.
50.199.826.9At5g04730830351unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
49.499.8115.9At3g29410822602terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POO.I.C.G.H.G.
48.699.821.7At2g31085817664CLE6 (CLAVATA3/ESR-RELATED 6)Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can replace CLV3 function in vivo.O.I.C.G.H.G.
48.499.8113.0At5g38930833885germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:cell wall;PFOO.I.C.G.H.G.
46.499.818.2At3g29110822559terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POO.I.C.G.H.G.
45.399.8168.9At5g19890832111peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:nucleus, cytoplasm;PFOBO.I.C.G.H.G.
44.599.814.1At3g29430822604geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putativeF:unknown;P:isoprenoid biosynthetic process;C:unknown;OBFPMAVO.I.C.G.H.G.
43.799.890.2At3g05950819765germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFBOO.I.C.G.H.G.
43.099.89.8At5g52350835311ATEXO70A3 (exocyst subunit EXO70 family protein A3)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.O.I.C.G.H.G.
41.199.855.1At3g49860824148ATARLA1B (ADP-ribosylation factor-like A1B)A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.O.I.C.G.H.G.
41.099.8173.3At4g07820826263pathogenesis-related protein, putativeF:molecular_function unknown;P:unknown;C:endomembrane system, extracellular region;PMFBOO.I.C.G.H.G.
40.699.813.5At3g54070824574ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVAO.I.C.G.H.G.
40.499.856.7At1g31885840079transporterF:transporter activity;P:transport;C:integral to membrane, membrane;BPOMFAVO.I.C.G.H.G.
40.099.814.9At1g53940841833GLIP2Encodes a lipase, has in vitro lipase activity with p-nitrophenyl acetate and p-nitrophenyl butyrate, gene expression induced by hormones, negatively regulates auxin signaling, involved in disease resistanceO.I.C.G.H.G.
39.299.831.5At4g15400827208transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:unknown;C:cellular_component unknown;PFBO.I.C.G.H.G.
38.199.8246.7At1g15380838107lactoylglutathione lyase family protein / glyoxalase I family proteinF:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BPOMFAO.I.C.G.H.G.
37.299.752.3At1g01190839233CYP78A8member of CYP78AO.I.C.G.H.G.
37.299.749.2At4g35150829667O-methyltransferase family 2 proteinF:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFMOO.I.C.G.H.G.
37.099.744.4At1g30840839967ATPUP4Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.O.I.C.G.H.G.
36.499.742.4At4g18510827583CLE2 (CLAVATA3/ESR-RELATED)CLE2, putative ligand, member of large gene family homologous to Clavata3O.I.C.G.H.G.
34.599.715.5At2g24710817007ATGLR2.3member of Putative ligand-gated ion channel subunit familyO.I.C.G.H.G.
33.999.7169.5At5g01210831901transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO.I.C.G.H.G.
33.399.790.8At3g24290822017AMT1F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPAO.I.C.G.H.G.
32.199.768.0At1g11540837697unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBAPO.I.C.G.H.G.
32.099.721.3At2g14440815932leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
31.499.722.3At4g40070830170protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
30.999.721.3At4g10550826647subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.C.G.H.G.
28.899.717.9At2g36090818182F-box family proteinF:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
28.299.738.5At2g35270818094DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOFVAO.I.C.G.H.G.
28.199.712.6At4g28410828958aminotransferase-relatedF:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAFO.I.C.G.H.G.
28.099.731.4At1g31320840020LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4)F:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
27.899.7396.8At4g22212828313-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
27.899.724.9At1g65680842879ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
27.899.712.7At4g24180828519-F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOVO.I.C.G.H.G.
27.599.770.6At4g17800827502DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFO.I.C.G.H.G.
27.499.722.2At3g60270825198uclacyanin, putativeF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBVFMAO.I.C.G.H.G.
27.399.789.7At1g30270839907CIPK23 (CBL-INTERACTING PROTEIN KINASE 23)Arabidopsis thaliana CBL-interacting protein kinase 23. CIPK23 serves as a positive regulator of the potassium transporter AKT1 by directly phosphorylates AKT1. CIPK23 is activated by the binding of two calcineurin B-like proteins, CBL1 and CBL9.O.I.C.G.H.G.
27.099.723.1At1g53640841800unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFOBVO.I.C.G.H.G.
26.799.762.3At5g42500834257disease resistance-responsive family proteinF:molecular_function unknown;P:defense response;C:endomembrane system;PO.I.C.G.H.G.
26.699.723.3At5g24230832490-F:unknown;P:unknown;C:cellular_component unknown;PFMO.I.C.G.H.G.
26.499.726.2At1g67110843031CYP735A2member of CYP709AO.I.C.G.H.G.
25.599.746.9At4g13235826940EDA21 (embryo sac development arrest 21)Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
25.099.611.0At1g27620839654transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO.I.C.G.H.G.
24.999.6121.1At2g39530818538integral membrane protein, putativeF:molecular_function unknown;P:biological_process unknown;C:membrane;PO.I.C.G.H.G.
24.899.676.7At5g43180834336unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBOO.I.C.G.H.G.
24.299.665.8At3g20015821540aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFOO.I.C.G.H.G.
24.299.634.0At1g11080837649scpl31 (serine carboxypeptidase-like 31)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
24.199.621.5At2g42250818826CYP712A1member of CYP712AO.I.C.G.H.G.
24.099.645.8At1g78090844144ATTPPB (TREHALOSE-6-PHOSPHATE PHOSPHATASE)homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatasesO.I.C.G.H.G.
23.899.621.2At3g46270823772receptor protein kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPBOFVAO.I.C.G.H.G.
23.799.650.2At3g01260821171aldose 1-epimerase/ carbohydrate binding / catalytic/ isomeraseF:carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVAO.I.C.G.H.G.
23.799.630.6At2g35000818064zinc finger (C3HC4-type RING finger) family proteinE3 ligase-like protein induced by chitin oligomers.O.I.C.G.H.G.
21.999.648.5At4g08300826384nodulin MtN21 family proteinF:unknown;P:unknown;C:membrane;BPOAMFO.I.C.G.H.G.
21.899.660.0At5g25810832650tny (TINY)encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family (TINY). The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic or overexpression of this gene in a Ds tagged line has reduced cell expansion. The expression of this gene is induced by ethylene and light and appears to stimulate cytokinin biosynthesis.O.I.C.G.H.G.
21.399.6133.9At5g48430834898aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PO.I.C.G.H.G.
21.099.674.9At2g44380819045DC1 domain-containing proteinF:unknown;P:unknown;C:unknown;PMOO.I.C.G.H.G.
21.099.670.1At1g49570841381peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBO.I.C.G.H.G.
20.899.614.3At5g50590835128AtHSD4 (hydroxysteroid dehydrogenase 4)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
20.799.647.4At1g21140838710nodulin, putativeF:unknown;P:biological_process unknown;C:unknown;BOPFAO.I.C.G.H.G.
20.699.6197.7At1g26250839166proline-rich extensin, putativeF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVAO.I.C.G.H.G.
20.599.621.3At2g28960817445leucine-rich repeat protein kinase, putativeF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
20.299.688.1At3g52360824401unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
20.099.636.5At5g10210830885-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
20.099.623.1At4g01970828186AtSTS (Arabidopsis thaliana stachyose synthase)Encodes a putative stachyose synthetase.O.I.C.G.H.G.
20.099.615.9At2g38600818442acid phosphatase class B family proteinF:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOO.I.C.G.H.G.
20.099.614.4At5g05400830422disease resistance protein (CC-NBS-LRR class), putativeF:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:chloroplast;PMBOFAO.I.C.G.H.G.
19.999.646.8At2g18140816327peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall;PFOBMO.I.C.G.H.G.
19.699.6232.7At5g50200835085WR3 (WOUND-RESPONSIVE 3)Wound-responsive gene 3 (WR3). Encodes a high-affinity nitrate transporter. Up-regulated by nitrate. Involved in jasmonic acid-independent wound signal transduction.O.I.C.G.H.G.
19.599.6205.9At1g44800841044nodulin MtN21 family proteinF:molecular_function unknown;P:unknown;C:membrane;BOPAMO.I.C.G.H.G.
19.499.6102.8At3g23430821924PHO1 (phosphate 1)mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains.O.I.C.G.H.G.
19.399.655.9At1g01640839534speckle-type POZ protein-relatedF:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOVFO.I.C.G.H.G.
19.299.635.4At2g01950814726BRL2 (BRI1-LIKE 2)Encodes a leucine rich repeat receptor kinase and associated with provascular/procambial cells. Similar to BRI, brassinosteroid receptor protein.O.I.C.G.H.G.
19.299.614.5At1g725908435913-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family proteinF:oxidoreductase activity, acting on the CH-CH group of donors, 3-oxo-5-alpha-steroid 4-dehydrogenase activity;P:lipid metabolic process;C:endomembrane system, integral to membrane, cytoplasm;MOFPBO.I.C.G.H.G.
19.199.6152.1At5g59090836026ATSBT4.12F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, nucleus, cytoplasm;BPOFAMO.I.C.G.H.G.
19.199.6121.4At4g14630827113GLP9 (GERMIN-LIKE PROTEIN 9)germin-like protein with N-terminal signal sequence that may target it to the vacuole, plasma membrane and/or outside the cell.O.I.C.G.H.G.
19.199.613.0At3g18450821374unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.C.G.H.G.
18.899.541.6At2g40330818626Bet v I allergen family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBOO.I.C.G.H.G.
18.599.581.8At1g13300837890myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POVBMFO.I.C.G.H.G.
18.599.535.2At5g10170830881MIPS3 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3)myo-inositol-1-phosphate synthase isoform 3.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.O.I.C.G.H.G.
18.499.527.6At5g19970832119unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
18.299.5252.5At1g15670838136kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOAFVO.I.C.G.H.G.
18.099.527.2At3g04570819613DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:unknown;BPMOFVAO.I.C.G.H.G.
17.999.598.6At3g13650820569disease resistance responseF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
17.899.5145.9At4g30450829168glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPFVAO.I.C.G.H.G.
17.899.5120.8At5g10580830923unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOO.I.C.G.H.G.
17.899.556.3At3g18560821387unknown proteinF:unknown;P:unknown;C:unknown;PO.I.C.G.H.G.



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