CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM157299

Assay name JPritchard_A-1_CTR_Rep1_ATH1

GSE experiment GSE6823: The molecular basis of plant insect interactions

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
18.7 99.5 66.2 At4g30690 829192 translation initiation factor 3 (IF-3) family protein F:translation initiation factor activity;P:translational initiation;C:cell wall, chloroplast;BOMPF O.I. C.G. H.G.
16.8 99.5 39.6 At2g44740 819082 CYCP4 F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;FOMPB O.I. C.G. H.G.
14.6 99.4 6.9 At4g26540 828760 kinase F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
13.7 99.4 186.8 At4g27800 828893 protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1) F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:nucleolus, nucleus, chloroplast, protein serine/threonine phosphatase complex, cytoplasm;PMOFBVA O.I. C.G. H.G.
12.9 99.3 31.9 At3g56060 824772 glucose-methanol-choline (GMC) oxidoreductase family protein F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVA O.I. C.G. H.G.
12.6 99.3 130.8 At2g40610 818656 ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. O.I. C.G. H.G.
12.5 99.3 76.2 At5g06690 830558 WCRKC1 (WCRKC THIOREDOXIN 1) Encodes a thioredoxin (WCRKC1) localized in chloroplast stroma. Contains a WCRKC motif. O.I. C.G. H.G.
12.0 99.3 141.1 At1g29395 839815 COR414-TM1 encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane. O.I. C.G. H.G.
11.5 99.3 63.8 At4g19530 827695 disease resistance protein (TIR-NBS-LRR class), putative Encodes a TIR-NB-LRR resistance protein. Transient expression in tobacco induces cell death. O.I. C.G. H.G.
11.5 99.3 36.0 At1g07050 837216 CONSTANS-like protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF O.I. C.G. H.G.
11.5 99.3 23.3 At2g23130 816845 AGP17 (ARABINOGALACTAN PROTEIN 17) AGP17 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP18 and AGP19, other lysine-rich AGPs. 84% of its proline residues are hydroxylated to hydroproline and its heavy glycosylation accounts for appr. 69% of the molecular weight. The main glycosyl residues are arabinose (30.1%) and galactose (55.1%). Glycosyl linkages are consistent with type II arabinogalactans. AGP17 is predicted to have a glycosylphosphatidylinositol (GPI)anchor and is localized to the plasma membrane and Hechtian strands. It is expressed in young/old leaves, shoots, suspension cultures and flowers. O.I. C.G. H.G.
11.4 99.3 16.6 At1g29450 839821 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
11.0 99.2 53.2 At5g58670 835981 PLC1 (PHOSPHOLIPASE C 1) phosphatidylinositol-specific phospholipase C is induced to a significant extent under various environmental stresses, such as dehydration, salinity, and low temperature. May play a role in secondary ABA response. There are two genes called ATPLC1, one corresponding to AT4g38530 and one corresponding ot AT5g58670 (this one). O.I. C.G. H.G.
10.8 99.2 185.5 At4g32340 829368 - F:unknown;P:unknown;C:unknown;MPBOFVA O.I. C.G. H.G.
10.8 99.2 25.3 At1g12710 837826 AtPP2-A12 (Phloem protein 2-A12) This gene is predicted to encode a protein with a PP2 domain. This domain in present in lectins found in squash and cucumber, suggesting that this protein could potentially have carbohydrate binding capabilities. O.I. C.G. H.G.
10.6 99.2 51.5 At2g47930 819405 AGP26 (ARABINOGALACTAN PROTEIN 26) F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OPMVBFA O.I. C.G. H.G.
10.5 99.2 12.1 At1g29460 839822 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;P O.I. C.G. H.G.
10.4 99.2 42.3 At3g30180 822709 BR6OX2 (BRASSINOSTEROID-6-OXIDASE 2) Encodes a cytochrome p450 enzyme that catalyzes the last reaction in the production of brassinolide. It is capable of converting 6-deoxocastasterone into castasterone, a C-6 oxidation, as well as the further conversion of castasterone into brassinolide by a Baeyer-Villinger oxidation reaction at C-6, resulting in the formation of an unusual seven-membered lactone ring. The enzyme possesses high affinity for both C28- and C27-Brassinosteroids. The expression of the gene using a CYP85A2 promoter:LUC fusion construct was shown to be under circadian and light control. O.I. C.G. H.G.
10.4 99.2 16.5 At2g36050 818178 OFP15 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15) F:unknown;P:unknown;C:chloroplast;PO O.I. C.G. H.G.
10.3 99.2 148.4 At5g10380 830902 RING1 Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators. O.I. C.G. H.G.
10.3 99.2 36.2 At2g01870 814718 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P O.I. C.G. H.G.
10.3 99.2 24.0 At3g62750 825450 BGLU8 (BETA GLUCOSIDASE 8) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:vacuole;BOPMFA O.I. C.G. H.G.
10.2 99.2 126.2 At3g29320 822590 glucan phosphorylase, putative Encodes a plastidic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for maltooligosaccharides, such as maltoheptaose. O.I. C.G. H.G.
10.2 99.2 50.2 At1g51940 841622 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein F:kinase activity;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
9.9 99.1 188.6 At2g16660 816167 nodulin family protein F:unknown;P:unknown;C:endomembrane system;BOPFAM O.I. C.G. H.G.
9.9 99.1 41.6 At4g13340 826964 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;MBPOFVA O.I. C.G. H.G.
9.9 99.1 27.3 At3g19850 821522 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:endomembrane system;P O.I. C.G. H.G.
9.7 99.1 47.6 At3g06770 819862 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:unknown;PBFOMA O.I. C.G. H.G.
9.6 99.1 97.9 At5g27280 832786 zinc finger (DNL type) family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFPO O.I. C.G. H.G.
9.6 99.1 42.8 At2g43010 818903 PIF4 (phytochrome interacting factor 4) Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB. O.I. C.G. H.G.
9.3 99.1 151.1 At5g08410 830739 FTRA2 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2) F:ferredoxin:thioredoxin reductase activity, lipoate synthase activity, catalytic activity, ferredoxin reductase activity;P:photosynthesis, light reaction, lipoate biosynthetic process, photosynthesis;C:chloroplast;BPO O.I. C.G. H.G.
9.2 99.1 122.6 At5g16030 831460 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA O.I. C.G. H.G.
9.1 99.1 93.0 At5g16400 831501 ATF2 Encodes an f-type thioredoxin (Trx-f2) localized in chloroplast stroma. O.I. C.G. H.G.
9.1 99.1 11.0 At1g12730 837829 cell division cycle protein-related F:molecular_function unknown;P:GPI anchor biosynthetic process;C:integral to membrane, endoplasmic reticulum membrane;MFPO O.I. C.G. H.G.
9.0 99.1 132.2 At1g29390 839814 COR314-TM2 encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Possibly targeted to thylakoid membrane. O.I. C.G. H.G.
9.0 99.1 59.8 At1g20190 838608 ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
8.9 99.0 99.0 At4g04330 825753 unknown protein F:unknown;P:unknown;C:unknown;BPO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
18.7	99.5	66.2	At4g30690	829192	translation initiation factor 3 (IF-3) family protein	F:translation initiation factor activity;P:translational initiation;C:cell wall, chloroplast;BOMPF	O.I.	C.G.	H.G.
16.8	99.5	39.6	At2g44740	819082	CYCP4	F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;FOMPB	O.I.	C.G.	H.G.
14.6	99.4	6.9	At4g26540	828760	kinase	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
13.7	99.4	186.8	At4g27800	828893	protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1)	F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:nucleolus, nucleus, chloroplast, protein serine/threonine phosphatase complex, cytoplasm;PMOFBVA	O.I.	C.G.	H.G.
12.9	99.3	31.9	At3g56060	824772	glucose-methanol-choline (GMC) oxidoreductase family protein	F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVA	O.I.	C.G.	H.G.
12.6	99.3	130.8	At2g40610	818656	ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	O.I.	C.G.	H.G.
12.5	99.3	76.2	At5g06690	830558	WCRKC1 (WCRKC THIOREDOXIN 1)	Encodes a thioredoxin (WCRKC1) localized in chloroplast stroma. Contains a WCRKC motif.	O.I.	C.G.	H.G.
12.0	99.3	141.1	At1g29395	839815	COR414-TM1	encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.	O.I.	C.G.	H.G.
11.5	99.3	63.8	At4g19530	827695	disease resistance protein (TIR-NBS-LRR class), putative	Encodes a TIR-NB-LRR resistance protein. Transient expression in tobacco induces cell death.	O.I.	C.G.	H.G.
11.5	99.3	36.0	At1g07050	837216	CONSTANS-like protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF	O.I.	C.G.	H.G.
11.5	99.3	23.3	At2g23130	816845	AGP17 (ARABINOGALACTAN PROTEIN 17)	AGP17 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP18 and AGP19, other lysine-rich AGPs. 84% of its proline residues are hydroxylated to hydroproline and its heavy glycosylation accounts for appr. 69% of the molecular weight. The main glycosyl residues are arabinose (30.1%) and galactose (55.1%). Glycosyl linkages are consistent with type II arabinogalactans. AGP17 is predicted to have a glycosylphosphatidylinositol (GPI)anchor and is localized to the plasma membrane and Hechtian strands. It is expressed in young/old leaves, shoots, suspension cultures and flowers.	O.I.	C.G.	H.G.
11.4	99.3	16.6	At1g29450	839821	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
11.0	99.2	53.2	At5g58670	835981	PLC1 (PHOSPHOLIPASE C 1)	phosphatidylinositol-specific phospholipase C is induced to a significant extent under various environmental stresses, such as dehydration, salinity, and low temperature. May play a role in secondary ABA response. There are two genes called ATPLC1, one corresponding to AT4g38530 and one corresponding ot AT5g58670 (this one).	O.I.	C.G.	H.G.
10.8	99.2	185.5	At4g32340	829368	-	F:unknown;P:unknown;C:unknown;MPBOFVA	O.I.	C.G.	H.G.
10.8	99.2	25.3	At1g12710	837826	AtPP2-A12 (Phloem protein 2-A12)	This gene is predicted to encode a protein with a PP2 domain. This domain in present in lectins found in squash and cucumber, suggesting that this protein could potentially have carbohydrate binding capabilities.	O.I.	C.G.	H.G.
10.6	99.2	51.5	At2g47930	819405	AGP26 (ARABINOGALACTAN PROTEIN 26)	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OPMVBFA	O.I.	C.G.	H.G.
10.5	99.2	12.1	At1g29460	839822	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;P	O.I.	C.G.	H.G.
10.4	99.2	42.3	At3g30180	822709	BR6OX2 (BRASSINOSTEROID-6-OXIDASE 2)	Encodes a cytochrome p450 enzyme that catalyzes the last reaction in the production of brassinolide. It is capable of converting 6-deoxocastasterone into castasterone, a C-6 oxidation, as well as the further conversion of castasterone into brassinolide by a Baeyer-Villinger oxidation reaction at C-6, resulting in the formation of an unusual seven-membered lactone ring. The enzyme possesses high affinity for both C28- and C27-Brassinosteroids. The expression of the gene using a CYP85A2 promoter:LUC fusion construct was shown to be under circadian and light control.	O.I.	C.G.	H.G.
10.4	99.2	16.5	At2g36050	818178	OFP15 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15)	F:unknown;P:unknown;C:chloroplast;PO	O.I.	C.G.	H.G.
10.3	99.2	148.4	At5g10380	830902	RING1	Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators.	O.I.	C.G.	H.G.
10.3	99.2	36.2	At2g01870	814718	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P	O.I.	C.G.	H.G.
10.3	99.2	24.0	At3g62750	825450	BGLU8 (BETA GLUCOSIDASE 8)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:vacuole;BOPMFA	O.I.	C.G.	H.G.
10.2	99.2	126.2	At3g29320	822590	glucan phosphorylase, putative	Encodes a plastidic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for maltooligosaccharides, such as maltoheptaose.	O.I.	C.G.	H.G.
10.2	99.2	50.2	At1g51940	841622	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein	F:kinase activity;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
9.9	99.1	188.6	At2g16660	816167	nodulin family protein	F:unknown;P:unknown;C:endomembrane system;BOPFAM	O.I.	C.G.	H.G.
9.9	99.1	41.6	At4g13340	826964	leucine-rich repeat family protein / extensin family protein	F:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;MBPOFVA	O.I.	C.G.	H.G.
9.9	99.1	27.3	At3g19850	821522	phototropic-responsive NPH3 family protein	F:protein binding, signal transducer activity;P:response to light stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
9.7	99.1	47.6	At3g06770	819862	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:unknown;PBFOMA	O.I.	C.G.	H.G.
9.6	99.1	97.9	At5g27280	832786	zinc finger (DNL type) family protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFPO	O.I.	C.G.	H.G.
9.6	99.1	42.8	At2g43010	818903	PIF4 (phytochrome interacting factor 4)	Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB.	O.I.	C.G.	H.G.
9.3	99.1	151.1	At5g08410	830739	FTRA2 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2)	F:ferredoxin:thioredoxin reductase activity, lipoate synthase activity, catalytic activity, ferredoxin reductase activity;P:photosynthesis, light reaction, lipoate biosynthetic process, photosynthesis;C:chloroplast;BPO	O.I.	C.G.	H.G.
9.2	99.1	122.6	At5g16030	831460	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA	O.I.	C.G.	H.G.
9.1	99.1	93.0	At5g16400	831501	ATF2	Encodes an f-type thioredoxin (Trx-f2) localized in chloroplast stroma.	O.I.	C.G.	H.G.
9.1	99.1	11.0	At1g12730	837829	cell division cycle protein-related	F:molecular_function unknown;P:GPI anchor biosynthetic process;C:integral to membrane, endoplasmic reticulum membrane;MFPO	O.I.	C.G.	H.G.
9.0	99.1	132.2	At1g29390	839814	COR314-TM2	encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Possibly targeted to thylakoid membrane.	O.I.	C.G.	H.G.
9.0	99.1	59.8	At1g20190	838608	ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
8.9	99.0	99.0	At4g04330	825753	unknown protein	F:unknown;P:unknown;C:unknown;BPO	O.I.	C.G.	H.G.

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GSM ID	GSM157299
Assay name	JPritchard_A-1_CTR_Rep1_ATH1
GSE experiment	GSE6823: The molecular basis of plant insect interactions

Microarray experiments to specifically-expressed genes

GSM ID GSM157299 Assay name JPritchard_A-1_CTR_Rep1_ATH1 GSE experiment GSE6823: The molecular basis of plant insect interactions

GSM ID GSM157299

Assay name JPritchard_A-1_CTR_Rep1_ATH1

GSE experiment GSE6823: The molecular basis of plant insect interactions