Microarray experiments to specifically-expressed genes

GSM ID GSM157299
Assay name JPritchard_A-1_CTR_Rep1_ATH1
GSE experiment GSE6823: The molecular basis of plant insect interactions

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
18.799.566.2At4g30690829192translation initiation factor 3 (IF-3) family proteinF:translation initiation factor activity;P:translational initiation;C:cell wall, chloroplast;BOMPFO.I.C.G.H.G.
16.899.539.6At2g44740819082CYCP4F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;FOMPBO.I.C.G.H.G.
14.699.46.9At4g26540828760kinaseF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
13.799.4186.8At4g27800828893protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1)F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:nucleolus, nucleus, chloroplast, protein serine/threonine phosphatase complex, cytoplasm;PMOFBVAO.I.C.G.H.G.
12.999.331.9At3g56060824772glucose-methanol-choline (GMC) oxidoreductase family proteinF:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVAO.I.C.G.H.G.
12.699.3130.8At2g40610818656ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
12.599.376.2At5g06690830558WCRKC1 (WCRKC THIOREDOXIN 1)Encodes a thioredoxin (WCRKC1) localized in chloroplast stroma. Contains a WCRKC motif.O.I.C.G.H.G.
12.099.3141.1At1g29395839815COR414-TM1encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.O.I.C.G.H.G.
11.599.363.8At4g19530827695disease resistance protein (TIR-NBS-LRR class), putativeEncodes a TIR-NB-LRR resistance protein. Transient expression in tobacco induces cell death.O.I.C.G.H.G.
11.599.336.0At1g07050837216CONSTANS-like protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFO.I.C.G.H.G.
11.599.323.3At2g23130816845AGP17 (ARABINOGALACTAN PROTEIN 17)AGP17 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP18 and AGP19, other lysine-rich AGPs. 84% of its proline residues are hydroxylated to hydroproline and its heavy glycosylation accounts for appr. 69% of the molecular weight. The main glycosyl residues are arabinose (30.1%) and galactose (55.1%). Glycosyl linkages are consistent with type II arabinogalactans. AGP17 is predicted to have a glycosylphosphatidylinositol (GPI)anchor and is localized to the plasma membrane and Hechtian strands. It is expressed in young/old leaves, shoots, suspension cultures and flowers.O.I.C.G.H.G.
11.499.316.6At1g29450839821auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G. (PHOSPHOLIPASE C 1)phosphatidylinositol-specific phospholipase C is induced to a significant extent under various environmental stresses, such as dehydration, salinity, and low temperature. May play a role in secondary ABA response. There are two genes called ATPLC1, one corresponding to AT4g38530 and one corresponding ot AT5g58670 (this one).O.I.C.G.H.G.
10.899.225.3At1g12710837826AtPP2-A12 (Phloem protein 2-A12)This gene is predicted to encode a protein with a PP2 domain. This domain in present in lectins found in squash and cucumber, suggesting that this protein could potentially have carbohydrate binding capabilities.O.I.C.G.H.G.
10.699.251.5At2g47930819405AGP26 (ARABINOGALACTAN PROTEIN 26)F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OPMVBFAO.I.C.G.H.G.
10.599.212.1At1g29460839822auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;PO.I.C.G.H.G.
10.499.242.3At3g30180822709BR6OX2 (BRASSINOSTEROID-6-OXIDASE 2)Encodes a cytochrome p450 enzyme that catalyzes the last reaction in the production of brassinolide. It is capable of converting 6-deoxocastasterone into castasterone, a C-6 oxidation, as well as the further conversion of castasterone into brassinolide by a Baeyer-Villinger oxidation reaction at C-6, resulting in the formation of an unusual seven-membered lactone ring. The enzyme possesses high affinity for both C28- and C27-Brassinosteroids. The expression of the gene using a CYP85A2 promoter:LUC fusion construct was shown to be under circadian and light control.O.I.C.G.H.G.
10.499.216.5At2g36050818178OFP15 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15)F:unknown;P:unknown;C:chloroplast;POO.I.C.G.H.G.
10.399.2148.4At5g10380830902RING1Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators.O.I.C.G.H.G.
10.399.236.2At2g01870814718unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO.I.C.G.H.G.
10.399.224.0At3g62750825450BGLU8 (BETA GLUCOSIDASE 8)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:vacuole;BOPMFAO.I.C.G.H.G.
10.299.2126.2At3g29320822590glucan phosphorylase, putativeEncodes a plastidic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for maltooligosaccharides, such as maltoheptaose.O.I.C.G.H.G. kinase family protein / peptidoglycan-binding LysM domain-containing proteinF:kinase activity;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
9.999.1188.6At2g16660816167nodulin family proteinF:unknown;P:unknown;C:endomembrane system;BOPFAMO.I.C.G.H.G.
9.999.141.6At4g13340826964leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;MBPOFVAO.I.C.G.H.G.
9.999.127.3At3g19850821522phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:endomembrane system;PO.I.C.G.H.G.
9.799.147.6At3g06770819862glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:unknown;PBFOMAO.I.C.G.H.G.
9.699.197.9At5g27280832786zinc finger (DNL type) family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFPOO.I.C.G.H.G.
9.699.142.8At2g43010818903PIF4 (phytochrome interacting factor 4)Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB.O.I.C.G.H.G.
9.399.1151.1At5g08410830739FTRA2 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2)F:ferredoxin:thioredoxin reductase activity, lipoate synthase activity, catalytic activity, ferredoxin reductase activity;P:photosynthesis, light reaction, lipoate biosynthetic process, photosynthesis;C:chloroplast;BPOO.I.C.G.H.G.
9.299.1122.6At5g16030831460unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBAO.I.C.G.H.G. an f-type thioredoxin (Trx-f2) localized in chloroplast stroma.O.I.C.G.H.G. division cycle protein-relatedF:molecular_function unknown;P:GPI anchor biosynthetic process;C:integral to membrane, endoplasmic reticulum membrane;MFPOO.I.C.G.H.G.
9.099.1132.2At1g29390839814COR314-TM2encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Possibly targeted to thylakoid membrane.O.I.C.G.H.G. (ARABIDOPSIS THALIANA EXPANSIN 11)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
8.999.099.0At4g04330825753unknown proteinF:unknown;P:unknown;C:unknown;BPOO.I.C.G.H.G.

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