CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM156790

Assay name control rep1

GSE experiment GSE6788: Expression data of an albino mutant DS 13-2198-1

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
161.8 99.9 30.4 At5g03090 831803 unknown protein F:molecular_function unknown;P:response to jasmonic acid stimulus;C:cellular_component unknown;P O.I. C.G. H.G.
143.7 99.9 1026.1 At3g48560 824015 CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) Catalyzes the formation of acetolactate from pyruvate, the first step in valine and isoleucine biosynthesis. Requires FAD, thiamine pyrophosphate and Mg. Inhibited by the sulphonylurea herbicide, chlorsulphuron, and the imidazolinone herbicide, imazapyr. The obtained crystal structure of acetohydroxyacid synthase AHAS, EC 2.2.1.6)in complex with herbicides of the sulphonylurea and imidazolinone family reveals the molecular basis for substrate/inhibitor binding. O.I. C.G. H.G.
55.4 99.8 37.2 At4g17970 827522 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BPOF O.I. C.G. H.G.
17.4 99.5 24.2 At1g69480 843280 EXS family protein / ERD1/XPR1/SYG1 family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, plasma membrane;FMPOB O.I. C.G. H.G.
16.3 99.5 77.8 At1g19610 838548 PDF1.4 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
16.1 99.5 25.2 At3g21790 821733 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMBOVF O.I. C.G. H.G.
16.0 99.5 54.1 At1g69260 843257 AFP1 (ABI FIVE BINDING PROTEIN) F:unknown;P:abscisic acid mediated signaling;C:nucleus;POMF O.I. C.G. H.G.
14.9 99.4 202.5 At2g43510 818952 ATTI1 Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory. O.I. C.G. H.G.
14.2 99.4 547.2 At1g75750 843908 GASA1 (GAST1 PROTEIN HOMOLOG 1) GA-responsive GAST1 protein homolog regulated by BR and GA antagonistically. Possibly involved in cell elongation based on expression data O.I. C.G. H.G.
14.2 99.4 26.3 At3g10450 820209 SCPL7 (SERINE CARBOXYPEPTIDASE-LIKE 7) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO O.I. C.G. H.G.
13.7 99.4 38.6 At3g01970 821270 WRKY45 member of WRKY Transcription Factor; Group I O.I. C.G. H.G.
12.6 99.3 99.4 At3g51860 824349 CAX3 (CATION EXCHANGER 3) F:cation:cation antiporter activity, calcium:cation antiporter activity, calcium:hydrogen antiporter activity;P:in 9 processes;C:plant-type vacuole membrane, vacuolar membrane, vacuole;BFOPAM O.I. C.G. H.G.
12.6 99.3 38.9 At4g15490 827221 UGT84A3 Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity. O.I. C.G. H.G.
12.4 99.3 251.1 At5g20700 832193 senescence-associated protein-related F:unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
12.0 99.3 897.7 At1g20620 838651 CAT3 (CATALASE 3) Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen. O.I. C.G. H.G.
11.9 99.3 22.8 At1g49450 841369 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFOBPA O.I. C.G. H.G.
11.8 99.3 276.7 At4g11650 826770 ATOSM34 (osmotin 34) osmotin-like protein O.I. C.G. H.G.
11.6 99.3 20.3 At1g68470 843176 exostosin family protein F:catalytic activity;P:biological_process unknown;C:membrane;POM O.I. C.G. H.G.
11.2 99.2 32.2 At1g09420 837465 G6PD4 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 4) Encodes a protein similar to glucose-6-phosphate dehydrogenase but, based on amino acid differences in the active site and lack of activity, does not encode a functional G6PDH. The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein. gc exon splice site at 20574 is based on protein alignment, and is not confirmed experimentally. O.I. C.G. H.G.
10.6 99.2 611.4 At2g05380 815086 GRP3S (GLYCINE-RICH PROTEIN 3 SHORT ISOFORM) glycine-rich protein 3 short isoform (GRP3S) mRNA, complete O.I. C.G. H.G.
10.3 99.2 30.6 At5g18840 832002 sugar transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOA O.I. C.G. H.G.
9.5 99.1 19.4 At1g08230 837344 - - O.I. C.G. H.G.
9.3 99.1 26.8 At4g16563 827356 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;PMFO O.I. C.G. H.G.
9.3 99.1 24.3 At4g16240 827318 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA O.I. C.G. H.G.
9.3 99.1 19.0 At1g19200 838503 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.0 99.1 6.8 At1g64560 842764 - pseudogene of S-adenosylmethionine-dependent methyltransferase/rRNA (adenine-N6,N6-)-dimethyltransferase/rRNA methyltransferase O.I. C.G. H.G.
8.7 99.0 21.5 At1g61810 842478 BGLU45 (BETA-GLUCOSIDASE 45) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
161.8	99.9	30.4	At5g03090	831803	unknown protein	F:molecular_function unknown;P:response to jasmonic acid stimulus;C:cellular_component unknown;P	O.I.	C.G.	H.G.
143.7	99.9	1026.1	At3g48560	824015	CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1)	Catalyzes the formation of acetolactate from pyruvate, the first step in valine and isoleucine biosynthesis. Requires FAD, thiamine pyrophosphate and Mg. Inhibited by the sulphonylurea herbicide, chlorsulphuron, and the imidazolinone herbicide, imazapyr. The obtained crystal structure of acetohydroxyacid synthase AHAS, EC 2.2.1.6)in complex with herbicides of the sulphonylurea and imidazolinone family reveals the molecular basis for substrate/inhibitor binding.	O.I.	C.G.	H.G.
55.4	99.8	37.2	At4g17970	827522	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;BPOF	O.I.	C.G.	H.G.
17.4	99.5	24.2	At1g69480	843280	EXS family protein / ERD1/XPR1/SYG1 family protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, plasma membrane;FMPOB	O.I.	C.G.	H.G.
16.3	99.5	77.8	At1g19610	838548	PDF1.4	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
16.1	99.5	25.2	At3g21790	821733	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMBOVF	O.I.	C.G.	H.G.
16.0	99.5	54.1	At1g69260	843257	AFP1 (ABI FIVE BINDING PROTEIN)	F:unknown;P:abscisic acid mediated signaling;C:nucleus;POMF	O.I.	C.G.	H.G.
14.9	99.4	202.5	At2g43510	818952	ATTI1	Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory.	O.I.	C.G.	H.G.
14.2	99.4	547.2	At1g75750	843908	GASA1 (GAST1 PROTEIN HOMOLOG 1)	GA-responsive GAST1 protein homolog regulated by BR and GA antagonistically. Possibly involved in cell elongation based on expression data	O.I.	C.G.	H.G.
14.2	99.4	26.3	At3g10450	820209	SCPL7 (SERINE CARBOXYPEPTIDASE-LIKE 7)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
13.7	99.4	38.6	At3g01970	821270	WRKY45	member of WRKY Transcription Factor; Group I	O.I.	C.G.	H.G.
12.6	99.3	99.4	At3g51860	824349	CAX3 (CATION EXCHANGER 3)	F:cation:cation antiporter activity, calcium:cation antiporter activity, calcium:hydrogen antiporter activity;P:in 9 processes;C:plant-type vacuole membrane, vacuolar membrane, vacuole;BFOPAM	O.I.	C.G.	H.G.
12.6	99.3	38.9	At4g15490	827221	UGT84A3	Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity.	O.I.	C.G.	H.G.
12.4	99.3	251.1	At5g20700	832193	senescence-associated protein-related	F:unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
12.0	99.3	897.7	At1g20620	838651	CAT3 (CATALASE 3)	Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen.	O.I.	C.G.	H.G.
11.9	99.3	22.8	At1g49450	841369	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFOBPA	O.I.	C.G.	H.G.
11.8	99.3	276.7	At4g11650	826770	ATOSM34 (osmotin 34)	osmotin-like protein	O.I.	C.G.	H.G.
11.6	99.3	20.3	At1g68470	843176	exostosin family protein	F:catalytic activity;P:biological_process unknown;C:membrane;POM	O.I.	C.G.	H.G.
11.2	99.2	32.2	At1g09420	837465	G6PD4 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 4)	Encodes a protein similar to glucose-6-phosphate dehydrogenase but, based on amino acid differences in the active site and lack of activity, does not encode a functional G6PDH. The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein. gc exon splice site at 20574 is based on protein alignment, and is not confirmed experimentally.	O.I.	C.G.	H.G.
10.6	99.2	611.4	At2g05380	815086	GRP3S (GLYCINE-RICH PROTEIN 3 SHORT ISOFORM)	glycine-rich protein 3 short isoform (GRP3S) mRNA, complete	O.I.	C.G.	H.G.
10.3	99.2	30.6	At5g18840	832002	sugar transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOA	O.I.	C.G.	H.G.
9.5	99.1	19.4	At1g08230	837344	-	-	O.I.	C.G.	H.G.
9.3	99.1	26.8	At4g16563	827356	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;PMFO	O.I.	C.G.	H.G.
9.3	99.1	24.3	At4g16240	827318	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA	O.I.	C.G.	H.G.
9.3	99.1	19.0	At1g19200	838503	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.0	99.1	6.8	At1g64560	842764	-	pseudogene of S-adenosylmethionine-dependent methyltransferase/rRNA (adenine-N6,N6-)-dimethyltransferase/rRNA methyltransferase	O.I.	C.G.	H.G.
8.7	99.0	21.5	At1g61810	842478	BGLU45 (BETA-GLUCOSIDASE 45)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.

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GSM ID	GSM156790
Assay name	control rep1
GSE experiment	GSE6788: Expression data of an albino mutant DS 13-2198-1

Microarray experiments to specifically-expressed genes

GSM ID GSM156790 Assay name control rep1 GSE experiment GSE6788: Expression data of an albino mutant DS 13-2198-1

GSM ID GSM156790

Assay name control rep1

GSE experiment GSE6788: Expression data of an albino mutant DS 13-2198-1