CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM152139

Assay name Col-0 drought 3

GSE experiment GSE6583: Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
981.5 100.0 104.4 At2g30830 817634 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase O.I. C.G. H.G.
241.7 100.0 74.0 At5g53710 835452 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
239.2 100.0 88.7 At4g02360 827767 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
188.8 100.0 140.2 At3g05640 819731 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:response to water deprivation;C:cellular_component unknown;PMOFV O.I. C.G. H.G.
180.1 100.0 60.3 At3g56260 824792 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
137.9 99.9 77.3 At2g20880 816622 AP2 domain-containing transcription factor, putative F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, cytoplasm;POMBFV O.I. C.G. H.G.
136.9 99.9 104.3 At4g28140 828929 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. O.I. C.G. H.G.
101.6 99.9 134.6 At4g17470 827458 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO O.I. C.G. H.G.
98.9 99.9 78.3 At2g41870 818787 remorin family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;POMFB O.I. C.G. H.G.
98.9 99.9 30.3 At4g16740 827377 ATTPS03 Monoterpene synthase, catalyzes the formation of the acyclic monoterpene (E)-beta-ocimene in response to wounding or treatment with jasmonic acid. O.I. C.G. H.G.
86.2 99.9 361.1 At2g39030 818489 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
78.2 99.9 315.9 At5g24420 832513 glucosamine/galactosamine-6-phosphate isomerase-related F:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFP O.I. C.G. H.G.
76.7 99.9 57.9 At1g49450 841369 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFOBPA O.I. C.G. H.G.
73.9 99.9 223.9 At1g43160 840915 RAP2.6 (related to AP2 6) encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family (RAP2.6). The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. C.G. H.G.
67.6 99.9 267.9 At1g26770 839218 ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. O.I. C.G. H.G.
67.5 99.8 104.6 At5g65280 836653 GCL1 (GCR2-LIKE 1) Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor. Loss of function mutations in GCL1 show no ABA response defects based on assays of seed germination and seedling development.GCL1 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase. O.I. C.G. H.G.
65.8 99.8 139.1 At2g34810 818046 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to jasmonic acid stimulus, response to wounding;C:endomembrane system;FBPOAM O.I. C.G. H.G.
61.4 99.8 173.7 At1g52720 841705 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
60.9 99.8 52.2 At5g52320 835308 CYP96A4 member of CYP96A O.I. C.G. H.G.
59.5 99.8 150.6 At1g60190 842314 armadillo/beta-catenin repeat family protein / U-box domain-containing protein F:ubiquitin-protein ligase activity, protein binding, binding, zinc ion binding;P:protein ubiquitination;C:ubiquitin ligase complex;PMOFBVA O.I. C.G. H.G.
58.5 99.8 86.0 At3g46660 823819 UGT76E12 (UDP-GLUCOSYL TRANSFERASE 76E12) F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
57.8 99.8 59.4 At5g05220 830404 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
57.2 99.8 168.5 At5g59220 836040 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:response to water deprivation, response to abscisic acid stimulus;C:chloroplast;MPOFBV O.I. C.G. H.G.
56.9 99.8 211.3 At3g06500 819828 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative F:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:unknown;OPB O.I. C.G. H.G.
56.5 99.8 249.4 At1g52890 841722 ANAC019 (Arabidopsis NAC domain containing protein 19) encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro. O.I. C.G. H.G.
52.5 99.8 93.4 At1g53170 841751 ERF8 encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-8). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. O.I. C.G. H.G.
52.0 99.8 103.6 At3g43270 823402 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:plant-type cell wall;PBFM O.I. C.G. H.G.
51.9 99.8 97.4 At1g69260 843257 AFP1 (ABI FIVE BINDING PROTEIN) F:unknown;P:abscisic acid mediated signaling;C:nucleus;POMF O.I. C.G. H.G.
51.3 99.8 47.3 At2g36590 818232 ProT3 (PROLINE TRANSPORTER 3) Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed in leaves, flowers and siliques but to a much lesser extent in roots. O.I. C.G. H.G.
49.1 99.8 95.3 At1g73390 843674 - F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PFM O.I. C.G. H.G.
47.5 99.8 39.5 At4g10390 826631 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:response to wounding;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
47.3 99.8 81.3 At5g04250 830304 OTU-like cysteine protease family protein F:cysteine-type peptidase activity;P:biological_process unknown;C:cellular_component unknown;MPOFVB O.I. C.G. H.G.
46.8 99.8 31.4 At1g62540 842551 FMO GS-OX2 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 2) belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates O.I. C.G. H.G.
45.9 99.8 150.8 At1g30250 839905 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
45.9 99.8 60.9 At5g57050 835809 ABI2 (ABA INSENSITIVE 2) Encodes a protein phosphatase 2C and is involved in ABA signal transduction. Binds fibrillin preprotein in vitro and in vivo. O.I. C.G. H.G.
45.2 99.8 101.8 At5g50570 835126 squamosa promoter-binding protein, putative F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PM O.I. C.G. H.G.
45.2 99.8 50.0 At1g64380 842745 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. O.I. C.G. H.G.
44.9 99.8 89.6 At5g10300 830894 MES5 (METHYL ESTERASE 5) Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
44.5 99.8 21.0 At5g24080 832473 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
44.1 99.8 122.1 At3g29575 822619 AFP3 (ABI FIVE BINDING PROTEIN 3) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
41.3 99.8 13.4 At2g22200 816754 AP2 domain-containing transcription factor encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. O.I. C.G. H.G.
41.2 99.8 42.8 At5g63450 836464 CYP94B1 member of CYP94B O.I. C.G. H.G.
41.1 99.8 189.1 At3g48520 824011 CYP94B3 member of CYP94B O.I. C.G. H.G.
40.7 99.8 49.3 At1g05100 839324 MAPKKK18 member of MEKK subfamily O.I. C.G. H.G.
39.8 99.8 541.6 At4g23600 828460 CORI3 (CORONATINE INDUCED 1) Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding. O.I. C.G. H.G.
39.4 99.8 162.0 At1g51760 841602 IAR3 (IAA-ALANINE RESISTANT 3) encodes a member of the six Arabidopsis IAA-amino acid conjugate hydrolase subfamily and conjugates and conjugates IAA-Ala in vitro. Gene is expressed most strongly in roots, stems, and flowers. O.I. C.G. H.G.
37.8 99.8 76.7 At1g61120 842405 TPS04 (TERPENE SYNTHASE 04) Encodes a geranyllinalool synthase that produces a precursor to TMTT, a volatile plant defense C16-homoterpene. GES transcript levels rise in response to alamethicin, a fungal peptide mixture that damages membranes. This transcriptional response is blocked in JA biosynthetic and JA signaling mutants, but GES transcript levels still rise in response to alamethicin in mutants with salicylic acid and ethylene biosynthetic and/or signaling defects. GES transcripts also accumulate in response to a larval infestation. This enzyme does not localize to the plastids, and it may be present in the cytosol or endoplasmic reticulum. O.I. C.G. H.G.
37.5 99.7 185.0 At4g31780 829306 MGD1 (MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 1) Encodes an A-type monogalactosyldiacylglycerol (MGDG) synthase. It represents the isoform responsible for the bulk of MGDG synthesis in Arabidopsis. O.I. C.G. H.G.
36.7 99.7 105.9 At4g01026 827923 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBM O.I. C.G. H.G.
36.3 99.7 48.2 At3g48350 823993 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
35.4 99.7 312.3 At2g33380 817901 RD20 (RESPONSIVE TO DESSICATION 20) Encodes a calcium binding protein whose mRNA is induced upon treatment with NaCl, ABA and in response to dessication. mRNA expression under drought conditions is apparent particularly in leaves and flowers. O.I. C.G. H.G.
35.3 99.7 108.7 At5g13800 831225 hydrolase, alpha/beta fold family protein F:hydrolase activity, pheophytinase activity;P:chlorophyll catabolic process;C:chloroplast;BOPMAF O.I. C.G. H.G.
34.1 99.7 19.3 At5g38130 833793 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:unknown;C:unknown;PF O.I. C.G. H.G.
31.6 99.7 73.2 At4g23050 828404 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, protein kinase activity, signal transducer activity;P:signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent;C:unknown;MPOFBVA O.I. C.G. H.G.
30.4 99.7 76.4 At5g60890 836210 MYB34 (MYB DOMAIN PROTEIN 34) Myb-like transcription factor that modulates expression of ASA1, a key point of control in the tryptophan pathway; mutant has deregulated expression of ASA1 in dominant allele. Loss of function allele suggests ATR1 also functions at a control point for regulating indole glucosinolate homeostasis. O.I. C.G. H.G.
30.0 99.7 37.8 At3g02150 821061 PTF1 (PLASTID TRANSCRIPTION FACTOR 1) a chloroplast trans-acting factor of the psbD light-responsive promoter.TCP gene involved in heterochronic control of leaf differentiation. O.I. C.G. H.G.
29.1 99.7 28.0 At4g33905 829534 peroxisomal membrane protein 22 kDa, putative F:unknown;P:biological_process unknown;C:integral to membrane, peroxisomal membrane;MFPOV O.I. C.G. H.G.
28.7 99.7 71.5 At1g66760 842994 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:response to wounding;C:membrane;BOPFMA O.I. C.G. H.G.
28.6 99.7 113.8 At1g30260 839906 - F:molecular_function unknown;P:response to cytokinin stimulus;C:unknown;P O.I. C.G. H.G.
28.4 99.7 117.1 At1g17380 838310 JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5) F:molecular_function unknown;P:response to jasmonic acid stimulus;C:cellular_component unknown;P O.I. C.G. H.G.
27.4 99.7 117.3 At5g13220 831162 JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10) Plants overexpressing At5g13220.3, but not At5g13220.1 showed enhanced insensitivity to MeJa. O.I. C.G. H.G.
27.4 99.7 55.6 At1g71080 843448 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPAV O.I. C.G. H.G.
27.3 99.7 33.5 At4g35550 829707 WOX13 (WUSCHEL-RELATED HOMEOBOX 13) Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. WOX13 is the only family member that does not contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. O.I. C.G. H.G.
27.2 99.7 197.6 At4g26080 828714 ABI1 (ABA INSENSITIVE 1) Involved in abscisic acid (ABA) signal transduction. Negative regulator of ABA promotion of stomatal closure. O.I. C.G. H.G.
27.2 99.7 160.4 At5g47240 834771 atnudt8 (Arabidopsis thaliana Nudix hydrolase homolog 8) F:hydrolase activity;P:response to wounding;C:cytosol;BOMPAFV O.I. C.G. H.G.
26.8 99.7 214.6 At2g29450 817494 ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5) Encodes a member of the TAU glutathione S-transferase gene family. Gene expression is induced by exposure to auxin, pathogen and herbicides. Naming convention according to Wagner et al. (2002) O.I. C.G. H.G.
26.6 99.7 236.3 At4g27410 828849 RD26 (RESPONSIVE TO DESICCATION 26) Encodes a NAC transcription factor induced in response to dessication. It is localized to the nucleus and acts as a transcriptional activator in ABA-mediated dehydration response. O.I. C.G. H.G.
26.5 99.7 172.3 At1g70700 843407 TIFY7 JAZ9 is a protein presumed to be involved in jasmonate signaling. JAZ9 transcript levels rise in response to a jasmonate stimulus. JAZ9 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. The Jas domain appears to be important for JAZ9-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2. O.I. C.G. H.G.
26.1 99.7 50.5 At5g61810 836303 mitochondrial substrate carrier family protein F:binding, calcium ion binding;P:transport;C:mitochondrial inner membrane, membrane;MFPOBV O.I. C.G. H.G.
26.1 99.7 18.6 At5g67180 836853 AP2 domain-containing transcription factor, putative F:transcription factor activity, DNA binding;P:multicellular organismal development, response to heat, regulation of transcription, DNA-dependent;C:nucleus;POBV O.I. C.G. H.G.
25.8 99.7 227.9 At3g11410 820314 PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA) Encodes protein phosphatase 2C. Negative regulator of ABA signalling. Expressed in seeds during germination. mRNA up-regulated by drought and ABA. O.I. C.G. H.G.
25.7 99.7 62.3 At1g07430 837255 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV O.I. C.G. H.G.
25.6 99.7 194.1 At1g74950 843834 TIFY10B F:molecular_function unknown;P:response to jasmonic acid stimulus, response to wounding;C:cellular_component unknown;P O.I. C.G. H.G.
24.9 99.6 73.7 At5g04760 830354 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMF O.I. C.G. H.G.
24.5 99.6 253.8 At2g06050 815160 OPR3 (OPDA-REDUCTASE 3) Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence. O.I. C.G. H.G.
24.3 99.6 115.6 At2g22330 816765 CYP79B3 Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates. O.I. C.G. H.G.
24.1 99.6 92.1 At5g59480 836067 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFA O.I. C.G. H.G.
23.7 99.6 35.1 At2g38760 818458 ANNAT3 (ANNEXIN ARABIDOPSIS 3) Annexins are calcium binding proteins that are localized in the cytoplasm. When cytosolic Ca2+ increases, they relocate to the plasma membrane. O.I. C.G. H.G.
23.4 99.6 30.4 At5g62470 836367 MYB96 (myb domain protein 96) Encodes a R2R3 type Myb transcription factor whose expression is strongly induced by abscisic acid. O.I. C.G. H.G.
23.2 99.6 96.6 At3g17000 820956 UBC32 (ubiquitin-conjugating enzyme 32) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV O.I. C.G. H.G.
22.9 99.6 36.8 At5g50360 835103 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
22.9 99.6 33.1 At4g05100 825855 AtMYB74 (myb domain protein 74) Member of the R2R3 factor gene family. O.I. C.G. H.G.
22.8 99.6 135.8 At3g51450 824308 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOAF O.I. C.G. H.G.
22.6 99.6 8.8 At5g59760 836097 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
22.5 99.6 147.6 At2g46370 819244 JAR1 (JASMONATE RESISTANT 1) Encodes a jasmonate-amido synthetase that is a member of the GH3 family of proteins. JAR1 catalyzes the formation of a biologically active jasmonyl-isoleucine (JA-Ile) conjugate. JA-Ile promotes the interaction between JAZ1 and COI1 in the jasmonate signaling pathway. JAR1 localizes to the cytoplasm and is also a phytochrome A signaling component. JAR1 is an auxin-induced gene. Loss of function mutants are defective in a variety of responses to jasmonic acid. JAR1 has additional enzymatic activities in vitro, (e.g. the ability to synthesize adenosine 5'-tetraphosphate and other JA conjugates), but there are no data to show whether JAR1 catalyzes many of these reactions in vivo. JAR1 is involved in pathogen defense, sensitivity to ozone, and wound responses. O.I. C.G. H.G.
22.1 99.6 287.1 At1g19180 838501 JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1) JAZ1 is a nuclear-localized protein involved in jasmonate signaling. JAZ1 transcript levels rise in response to a jasmonate stimulus. JAZ1 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ1:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation. The Jas domain appears to be important for JAZ1-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2. O.I. C.G. H.G.
21.8 99.6 170.2 At4g37990 829955 ELI3-2 (ELICITOR-ACTIVATED GENE 3-2) Encodes an aromatic alcohol:NADP+ oxidoreductase whose mRNA levels are increased in response to treatment with a variety of phytopathogenic bacteria. Though similar to mannitol dehydrogenases, this enzyme does not have mannitol dehydrogenase activity. O.I. C.G. H.G.
21.7 99.6 42.6 At3g59050 825074 ATPAO3 (Polyamine oxidase 3) F:polyamine oxidase activity;P:polyamine catabolic process;C:peroxisome;BMOFPA O.I. C.G. H.G.
21.4 99.6 142.2 At3g44880 823622 ACD1 (ACCELERATED CELL DEATH 1) Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato pathogens and to ethylene. O.I. C.G. H.G.
21.4 99.6 85.9 At1g58200 842187 MSL3 (MscS-LIKE 3) A member of MscS-like gene family, structurally very similar to MSL2, comprising of an N-terminal chloroplast transit peptide, five trans-membrane helices and a C-terminal cytoplasmic domain. Mutant plants showed abnormalities in the size and shape of plastids. MSL3-GFP was localized to discrete foci on the plastid envelope and co-localize with the plastid division protein AtMinE. MSL3 was capable of increasing the osmotic-shock survival of a mutant bacterial strain lacking MS-ion-channel activity. O.I. C.G. H.G.
21.4 99.6 78.7 At1g07720 837286 KCS3 (3-KETOACYL-COA SYNTHASE 3) Encodes KCS3, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
21.3 99.6 19.7 At5g03210 831903 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
21.2 99.6 254.1 At1g19670 838554 ATCLH1 (ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1) Chlorophyllase is the first enzyme involved in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to yield chlorophyllide and phytol. AtCLH1 lacks a typical signal sequence for the chloroplast. Its expression is induced rapidly by methyljasmonate, a known promoter of senescence and chlorophyll degradation. O.I. C.G. H.G.
21.1 99.6 189.0 At3g23920 821975 BAM1 (BETA-AMYLASE 1) Encodes a chloroplast beta-amylase. Is necessary for leaf starch breakdown in the absence of BAM3. O.I. C.G. H.G.
21.1 99.6 33.3 At1g80110 844351 ATPP2-B11 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2-B11) F:carbohydrate binding;P:unknown;C:nucleus;P O.I. C.G. H.G.
21.0 99.6 181.5 At5g05600 830443 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, iron ion binding;P:response to salt stress;C:unknown;POBFM O.I. C.G. H.G.
20.9 99.6 33.7 At3g02140 821182 TMAC2 (TWO OR MORE ABRES-CONTAINING GENE 2) Encodes a protein that acts in the nucleus and is an important negative regulator of ABA and salt stress responses, and could play a critical role in controlling root elongation, floral initiation and starch degradation. O.I. C.G. H.G.
20.7 99.6 12.7 At1g69610 843297 structural constituent of ribosome F:structural constituent of ribosome;P:N-terminal protein myristoylation, translation;C:ribosome, intracellular;OPMFB O.I. C.G. H.G.
20.7 99.6 12.6 At3g63060 825481 EDL3 (EID1-like 3) F:unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
20.2 99.6 7.9 At2g44810 819090 DAD1 (DEFECTIVE ANTHER DEHISCENCE 1) Mutant has defects in anther dehiscence, pollen maturation, and flower opening. The DAD1 protein is a chloroplastic phospholipase A1 that catalyzes the initial step of jasmonic acid biosynthesis. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
981.5	100.0	104.4	At2g30830	817634	2-oxoglutarate-dependent dioxygenase, putative	encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase	O.I.	C.G.	H.G.
241.7	100.0	74.0	At5g53710	835452	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
239.2	100.0	88.7	At4g02360	827767	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
188.8	100.0	140.2	At3g05640	819731	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:response to water deprivation;C:cellular_component unknown;PMOFV	O.I.	C.G.	H.G.
180.1	100.0	60.3	At3g56260	824792	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
137.9	99.9	77.3	At2g20880	816622	AP2 domain-containing transcription factor, putative	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, cytoplasm;POMBFV	O.I.	C.G.	H.G.
136.9	99.9	104.3	At4g28140	828929	AP2 domain-containing transcription factor, putative	encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.	O.I.	C.G.	H.G.
101.6	99.9	134.6	At4g17470	827458	palmitoyl protein thioesterase family protein	F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
98.9	99.9	78.3	At2g41870	818787	remorin family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
98.9	99.9	30.3	At4g16740	827377	ATTPS03	Monoterpene synthase, catalyzes the formation of the acyclic monoterpene (E)-beta-ocimene in response to wounding or treatment with jasmonic acid.	O.I.	C.G.	H.G.
86.2	99.9	361.1	At2g39030	818489	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
78.2	99.9	315.9	At5g24420	832513	glucosamine/galactosamine-6-phosphate isomerase-related	F:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFP	O.I.	C.G.	H.G.
76.7	99.9	57.9	At1g49450	841369	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFOBPA	O.I.	C.G.	H.G.
73.9	99.9	223.9	At1g43160	840915	RAP2.6 (related to AP2 6)	encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family (RAP2.6). The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	C.G.	H.G.
67.6	99.9	267.9	At1g26770	839218	ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)	Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	O.I.	C.G.	H.G.
67.5	99.8	104.6	At5g65280	836653	GCL1 (GCR2-LIKE 1)	Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor. Loss of function mutations in GCL1 show no ABA response defects based on assays of seed germination and seedling development.GCL1 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase.	O.I.	C.G.	H.G.
65.8	99.8	139.1	At2g34810	818046	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to jasmonic acid stimulus, response to wounding;C:endomembrane system;FBPOAM	O.I.	C.G.	H.G.
61.4	99.8	173.7	At1g52720	841705	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
60.9	99.8	52.2	At5g52320	835308	CYP96A4	member of CYP96A	O.I.	C.G.	H.G.
59.5	99.8	150.6	At1g60190	842314	armadillo/beta-catenin repeat family protein / U-box domain-containing protein	F:ubiquitin-protein ligase activity, protein binding, binding, zinc ion binding;P:protein ubiquitination;C:ubiquitin ligase complex;PMOFBVA	O.I.	C.G.	H.G.
58.5	99.8	86.0	At3g46660	823819	UGT76E12 (UDP-GLUCOSYL TRANSFERASE 76E12)	F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
57.8	99.8	59.4	At5g05220	830404	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
57.2	99.8	168.5	At5g59220	836040	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:response to water deprivation, response to abscisic acid stimulus;C:chloroplast;MPOFBV	O.I.	C.G.	H.G.
56.9	99.8	211.3	At3g06500	819828	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	F:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:unknown;OPB	O.I.	C.G.	H.G.
56.5	99.8	249.4	At1g52890	841722	ANAC019 (Arabidopsis NAC domain containing protein 19)	encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro.	O.I.	C.G.	H.G.
52.5	99.8	93.4	At1g53170	841751	ERF8	encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-8). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.	O.I.	C.G.	H.G.
52.0	99.8	103.6	At3g43270	823402	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:plant-type cell wall;PBFM	O.I.	C.G.	H.G.
51.9	99.8	97.4	At1g69260	843257	AFP1 (ABI FIVE BINDING PROTEIN)	F:unknown;P:abscisic acid mediated signaling;C:nucleus;POMF	O.I.	C.G.	H.G.
51.3	99.8	47.3	At2g36590	818232	ProT3 (PROLINE TRANSPORTER 3)	Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed in leaves, flowers and siliques but to a much lesser extent in roots.	O.I.	C.G.	H.G.
49.1	99.8	95.3	At1g73390	843674	-	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PFM	O.I.	C.G.	H.G.
47.5	99.8	39.5	At4g10390	826631	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:response to wounding;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
47.3	99.8	81.3	At5g04250	830304	OTU-like cysteine protease family protein	F:cysteine-type peptidase activity;P:biological_process unknown;C:cellular_component unknown;MPOFVB	O.I.	C.G.	H.G.
46.8	99.8	31.4	At1g62540	842551	FMO GS-OX2 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 2)	belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates	O.I.	C.G.	H.G.
45.9	99.8	150.8	At1g30250	839905	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
45.9	99.8	60.9	At5g57050	835809	ABI2 (ABA INSENSITIVE 2)	Encodes a protein phosphatase 2C and is involved in ABA signal transduction. Binds fibrillin preprotein in vitro and in vivo.	O.I.	C.G.	H.G.
45.2	99.8	101.8	At5g50570	835126	squamosa promoter-binding protein, putative	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PM	O.I.	C.G.	H.G.
45.2	99.8	50.0	At1g64380	842745	AP2 domain-containing transcription factor, putative	encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.	O.I.	C.G.	H.G.
44.9	99.8	89.6	At5g10300	830894	MES5 (METHYL ESTERASE 5)	Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
44.5	99.8	21.0	At5g24080	832473	protein kinase family protein	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
44.1	99.8	122.1	At3g29575	822619	AFP3 (ABI FIVE BINDING PROTEIN 3)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
41.3	99.8	13.4	At2g22200	816754	AP2 domain-containing transcription factor	encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.	O.I.	C.G.	H.G.
41.2	99.8	42.8	At5g63450	836464	CYP94B1	member of CYP94B	O.I.	C.G.	H.G.
41.1	99.8	189.1	At3g48520	824011	CYP94B3	member of CYP94B	O.I.	C.G.	H.G.
40.7	99.8	49.3	At1g05100	839324	MAPKKK18	member of MEKK subfamily	O.I.	C.G.	H.G.
39.8	99.8	541.6	At4g23600	828460	CORI3 (CORONATINE INDUCED 1)	Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding.	O.I.	C.G.	H.G.
39.4	99.8	162.0	At1g51760	841602	IAR3 (IAA-ALANINE RESISTANT 3)	encodes a member of the six Arabidopsis IAA-amino acid conjugate hydrolase subfamily and conjugates and conjugates IAA-Ala in vitro. Gene is expressed most strongly in roots, stems, and flowers.	O.I.	C.G.	H.G.
37.8	99.8	76.7	At1g61120	842405	TPS04 (TERPENE SYNTHASE 04)	Encodes a geranyllinalool synthase that produces a precursor to TMTT, a volatile plant defense C16-homoterpene. GES transcript levels rise in response to alamethicin, a fungal peptide mixture that damages membranes. This transcriptional response is blocked in JA biosynthetic and JA signaling mutants, but GES transcript levels still rise in response to alamethicin in mutants with salicylic acid and ethylene biosynthetic and/or signaling defects. GES transcripts also accumulate in response to a larval infestation. This enzyme does not localize to the plastids, and it may be present in the cytosol or endoplasmic reticulum.	O.I.	C.G.	H.G.
37.5	99.7	185.0	At4g31780	829306	MGD1 (MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 1)	Encodes an A-type monogalactosyldiacylglycerol (MGDG) synthase. It represents the isoform responsible for the bulk of MGDG synthesis in Arabidopsis.	O.I.	C.G.	H.G.
36.7	99.7	105.9	At4g01026	827923	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBM	O.I.	C.G.	H.G.
36.3	99.7	48.2	At3g48350	823993	cysteine proteinase, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
35.4	99.7	312.3	At2g33380	817901	RD20 (RESPONSIVE TO DESSICATION 20)	Encodes a calcium binding protein whose mRNA is induced upon treatment with NaCl, ABA and in response to dessication. mRNA expression under drought conditions is apparent particularly in leaves and flowers.	O.I.	C.G.	H.G.
35.3	99.7	108.7	At5g13800	831225	hydrolase, alpha/beta fold family protein	F:hydrolase activity, pheophytinase activity;P:chlorophyll catabolic process;C:chloroplast;BOPMAF	O.I.	C.G.	H.G.
34.1	99.7	19.3	At5g38130	833793	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:unknown;C:unknown;PF	O.I.	C.G.	H.G.
31.6	99.7	73.2	At4g23050	828404	protein kinase, putative	F:protein serine/threonine/tyrosine kinase activity, protein kinase activity, signal transducer activity;P:signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent;C:unknown;MPOFBVA	O.I.	C.G.	H.G.
30.4	99.7	76.4	At5g60890	836210	MYB34 (MYB DOMAIN PROTEIN 34)	Myb-like transcription factor that modulates expression of ASA1, a key point of control in the tryptophan pathway; mutant has deregulated expression of ASA1 in dominant allele. Loss of function allele suggests ATR1 also functions at a control point for regulating indole glucosinolate homeostasis.	O.I.	C.G.	H.G.
30.0	99.7	37.8	At3g02150	821061	PTF1 (PLASTID TRANSCRIPTION FACTOR 1)	a chloroplast trans-acting factor of the psbD light-responsive promoter.TCP gene involved in heterochronic control of leaf differentiation.	O.I.	C.G.	H.G.
29.1	99.7	28.0	At4g33905	829534	peroxisomal membrane protein 22 kDa, putative	F:unknown;P:biological_process unknown;C:integral to membrane, peroxisomal membrane;MFPOV	O.I.	C.G.	H.G.
28.7	99.7	71.5	At1g66760	842994	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:response to wounding;C:membrane;BOPFMA	O.I.	C.G.	H.G.
28.6	99.7	113.8	At1g30260	839906	-	F:molecular_function unknown;P:response to cytokinin stimulus;C:unknown;P	O.I.	C.G.	H.G.
28.4	99.7	117.1	At1g17380	838310	JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5)	F:molecular_function unknown;P:response to jasmonic acid stimulus;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.4	99.7	117.3	At5g13220	831162	JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)	Plants overexpressing At5g13220.3, but not At5g13220.1 showed enhanced insensitivity to MeJa.	O.I.	C.G.	H.G.
27.4	99.7	55.6	At1g71080	843448	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPAV	O.I.	C.G.	H.G.
27.3	99.7	33.5	At4g35550	829707	WOX13 (WUSCHEL-RELATED HOMEOBOX 13)	Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. WOX13 is the only family member that does not contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.	O.I.	C.G.	H.G.
27.2	99.7	197.6	At4g26080	828714	ABI1 (ABA INSENSITIVE 1)	Involved in abscisic acid (ABA) signal transduction. Negative regulator of ABA promotion of stomatal closure.	O.I.	C.G.	H.G.
27.2	99.7	160.4	At5g47240	834771	atnudt8 (Arabidopsis thaliana Nudix hydrolase homolog 8)	F:hydrolase activity;P:response to wounding;C:cytosol;BOMPAFV	O.I.	C.G.	H.G.
26.8	99.7	214.6	At2g29450	817494	ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5)	Encodes a member of the TAU glutathione S-transferase gene family. Gene expression is induced by exposure to auxin, pathogen and herbicides. Naming convention according to Wagner et al. (2002)	O.I.	C.G.	H.G.
26.6	99.7	236.3	At4g27410	828849	RD26 (RESPONSIVE TO DESICCATION 26)	Encodes a NAC transcription factor induced in response to dessication. It is localized to the nucleus and acts as a transcriptional activator in ABA-mediated dehydration response.	O.I.	C.G.	H.G.
26.5	99.7	172.3	At1g70700	843407	TIFY7	JAZ9 is a protein presumed to be involved in jasmonate signaling. JAZ9 transcript levels rise in response to a jasmonate stimulus. JAZ9 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. The Jas domain appears to be important for JAZ9-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.	O.I.	C.G.	H.G.
26.1	99.7	50.5	At5g61810	836303	mitochondrial substrate carrier family protein	F:binding, calcium ion binding;P:transport;C:mitochondrial inner membrane, membrane;MFPOBV	O.I.	C.G.	H.G.
26.1	99.7	18.6	At5g67180	836853	AP2 domain-containing transcription factor, putative	F:transcription factor activity, DNA binding;P:multicellular organismal development, response to heat, regulation of transcription, DNA-dependent;C:nucleus;POBV	O.I.	C.G.	H.G.
25.8	99.7	227.9	At3g11410	820314	PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA)	Encodes protein phosphatase 2C. Negative regulator of ABA signalling. Expressed in seeds during germination. mRNA up-regulated by drought and ABA.	O.I.	C.G.	H.G.
25.7	99.7	62.3	At1g07430	837255	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV	O.I.	C.G.	H.G.
25.6	99.7	194.1	At1g74950	843834	TIFY10B	F:molecular_function unknown;P:response to jasmonic acid stimulus, response to wounding;C:cellular_component unknown;P	O.I.	C.G.	H.G.
24.9	99.6	73.7	At5g04760	830354	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMF	O.I.	C.G.	H.G.
24.5	99.6	253.8	At2g06050	815160	OPR3 (OPDA-REDUCTASE 3)	Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence.	O.I.	C.G.	H.G.
24.3	99.6	115.6	At2g22330	816765	CYP79B3	Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.	O.I.	C.G.	H.G.
24.1	99.6	92.1	At5g59480	836067	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFA	O.I.	C.G.	H.G.
23.7	99.6	35.1	At2g38760	818458	ANNAT3 (ANNEXIN ARABIDOPSIS 3)	Annexins are calcium binding proteins that are localized in the cytoplasm. When cytosolic Ca2+ increases, they relocate to the plasma membrane.	O.I.	C.G.	H.G.
23.4	99.6	30.4	At5g62470	836367	MYB96 (myb domain protein 96)	Encodes a R2R3 type Myb transcription factor whose expression is strongly induced by abscisic acid.	O.I.	C.G.	H.G.
23.2	99.6	96.6	At3g17000	820956	UBC32 (ubiquitin-conjugating enzyme 32)	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV	O.I.	C.G.	H.G.
22.9	99.6	36.8	At5g50360	835103	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
22.9	99.6	33.1	At4g05100	825855	AtMYB74 (myb domain protein 74)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
22.8	99.6	135.8	At3g51450	824308	strictosidine synthase family protein	F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOAF	O.I.	C.G.	H.G.
22.6	99.6	8.8	At5g59760	836097	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
22.5	99.6	147.6	At2g46370	819244	JAR1 (JASMONATE RESISTANT 1)	Encodes a jasmonate-amido synthetase that is a member of the GH3 family of proteins. JAR1 catalyzes the formation of a biologically active jasmonyl-isoleucine (JA-Ile) conjugate. JA-Ile promotes the interaction between JAZ1 and COI1 in the jasmonate signaling pathway. JAR1 localizes to the cytoplasm and is also a phytochrome A signaling component. JAR1 is an auxin-induced gene. Loss of function mutants are defective in a variety of responses to jasmonic acid. JAR1 has additional enzymatic activities in vitro, (e.g. the ability to synthesize adenosine 5'-tetraphosphate and other JA conjugates), but there are no data to show whether JAR1 catalyzes many of these reactions in vivo. JAR1 is involved in pathogen defense, sensitivity to ozone, and wound responses.	O.I.	C.G.	H.G.
22.1	99.6	287.1	At1g19180	838501	JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1)	JAZ1 is a nuclear-localized protein involved in jasmonate signaling. JAZ1 transcript levels rise in response to a jasmonate stimulus. JAZ1 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ1:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation. The Jas domain appears to be important for JAZ1-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.	O.I.	C.G.	H.G.
21.8	99.6	170.2	At4g37990	829955	ELI3-2 (ELICITOR-ACTIVATED GENE 3-2)	Encodes an aromatic alcohol:NADP+ oxidoreductase whose mRNA levels are increased in response to treatment with a variety of phytopathogenic bacteria. Though similar to mannitol dehydrogenases, this enzyme does not have mannitol dehydrogenase activity.	O.I.	C.G.	H.G.
21.7	99.6	42.6	At3g59050	825074	ATPAO3 (Polyamine oxidase 3)	F:polyamine oxidase activity;P:polyamine catabolic process;C:peroxisome;BMOFPA	O.I.	C.G.	H.G.
21.4	99.6	142.2	At3g44880	823622	ACD1 (ACCELERATED CELL DEATH 1)	Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato pathogens and to ethylene.	O.I.	C.G.	H.G.
21.4	99.6	85.9	At1g58200	842187	MSL3 (MscS-LIKE 3)	A member of MscS-like gene family, structurally very similar to MSL2, comprising of an N-terminal chloroplast transit peptide, five trans-membrane helices and a C-terminal cytoplasmic domain. Mutant plants showed abnormalities in the size and shape of plastids. MSL3-GFP was localized to discrete foci on the plastid envelope and co-localize with the plastid division protein AtMinE. MSL3 was capable of increasing the osmotic-shock survival of a mutant bacterial strain lacking MS-ion-channel activity.	O.I.	C.G.	H.G.
21.4	99.6	78.7	At1g07720	837286	KCS3 (3-KETOACYL-COA SYNTHASE 3)	Encodes KCS3, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
21.3	99.6	19.7	At5g03210	831903	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
21.2	99.6	254.1	At1g19670	838554	ATCLH1 (ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1)	Chlorophyllase is the first enzyme involved in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to yield chlorophyllide and phytol. AtCLH1 lacks a typical signal sequence for the chloroplast. Its expression is induced rapidly by methyljasmonate, a known promoter of senescence and chlorophyll degradation.	O.I.	C.G.	H.G.
21.1	99.6	189.0	At3g23920	821975	BAM1 (BETA-AMYLASE 1)	Encodes a chloroplast beta-amylase. Is necessary for leaf starch breakdown in the absence of BAM3.	O.I.	C.G.	H.G.
21.1	99.6	33.3	At1g80110	844351	ATPP2-B11 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2-B11)	F:carbohydrate binding;P:unknown;C:nucleus;P	O.I.	C.G.	H.G.
21.0	99.6	181.5	At5g05600	830443	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, iron ion binding;P:response to salt stress;C:unknown;POBFM	O.I.	C.G.	H.G.
20.9	99.6	33.7	At3g02140	821182	TMAC2 (TWO OR MORE ABRES-CONTAINING GENE 2)	Encodes a protein that acts in the nucleus and is an important negative regulator of ABA and salt stress responses, and could play a critical role in controlling root elongation, floral initiation and starch degradation.	O.I.	C.G.	H.G.
20.7	99.6	12.7	At1g69610	843297	structural constituent of ribosome	F:structural constituent of ribosome;P:N-terminal protein myristoylation, translation;C:ribosome, intracellular;OPMFB	O.I.	C.G.	H.G.
20.7	99.6	12.6	At3g63060	825481	EDL3 (EID1-like 3)	F:unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
20.2	99.6	7.9	At2g44810	819090	DAD1 (DEFECTIVE ANTHER DEHISCENCE 1)	Mutant has defects in anther dehiscence, pollen maturation, and flower opening. The DAD1 protein is a chloroplastic phospholipase A1 that catalyzes the initial step of jasmonic acid biosynthesis.	O.I.	C.G.	H.G.

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GSM ID	GSM152139
Assay name	Col-0 drought 3
GSE experiment	GSE6583: Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress

Microarray experiments to specifically-expressed genes

GSM ID GSM152139 Assay name Col-0 drought 3 GSE experiment GSE6583: Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress

GSM ID GSM152139

Assay name Col-0 drought 3

GSE experiment GSE6583: Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress