CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM151705

Assay name gh3.5-1D 48 hpi, biological replicate 3

GSE experiment GSE6556: Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
154.6 99.9 292.7 At3g55970 824763 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
132.0 99.9 259.5 At1g76960 844031 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
88.6 99.9 366.2 At2g39030 818489 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
58.5 99.8 87.6 At1g56650 842120 PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1) Encodes a putative MYB domain containing transcription factor involved in anthocyanin metabolism and radical scavenging. Essential for the sucrose-mediated expression of the dihydroflavonol reductase gene. O.I. C.G. H.G.
50.1 99.8 89.3 At4g37150 829869 MES9 (METHYL ESTERASE 9) Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES9 appears to be involved in MeSA hydrolysis in planta. Expression of MES9 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
49.9 99.8 217.3 At4g27260 828834 WES1 encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin. O.I. C.G. H.G.
39.7 99.8 331.1 At2g43510 818952 ATTI1 Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory. O.I. C.G. H.G.
34.9 99.7 128.2 At1g70810 843418 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO O.I. C.G. H.G.
31.9 99.7 108.8 At1g53885 841826 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
31.1 99.7 74.5 At4g17470 827458 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO O.I. C.G. H.G.
30.2 99.7 65.1 At1g53870 841824 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
27.3 99.7 103.3 At2g29350 817484 SAG13 senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenase O.I. C.G. H.G.
27.2 99.7 89.4 At2g34810 818046 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to jasmonic acid stimulus, response to wounding;C:endomembrane system;FBPOAM O.I. C.G. H.G.
23.7 99.6 175.3 At4g08870 826458 arginase, putative Encodes one of the two arginase in the genome. Gene expression is enhanced by methyl jasmonate treatment. O.I. C.G. H.G.
23.0 99.6 286.5 At4g12490 826861 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:defense response to fungus, lipid transport;C:unknown;PBOMVFA O.I. C.G. H.G.
21.0 99.6 95.0 At3g44450 823570 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
19.6 99.6 50.8 At1g14230 837984 nucleoside phosphatase family protein / GDA1/CD39 family protein F:hydrolase activity;P:unknown;C:unknown;MFPOB O.I. C.G. H.G.
19.4 99.6 219.8 At2g43570 818959 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMV O.I. C.G. H.G.
19.2 99.6 376.4 At4g23600 828460 CORI3 (CORONATINE INDUCED 1) Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding. O.I. C.G. H.G.
18.4 99.5 423.3 At5g24770 832546 VSP2 (VEGETATIVE STORAGE PROTEIN 2) Has acid phosphatase activity dependent on the presence of divalent cations (Mg2+, Co2+, Zn2+, Mn2+) and anti-insect activity. Insects fed with the protein show a retarded development. Induced in response to abscisic acid, jasmonic acid, salt, water deficiency and wounding. O.I. C.G. H.G.
18.2 99.5 141.4 At1g52890 841722 ANAC019 (Arabidopsis NAC domain containing protein 19) encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro. O.I. C.G. H.G.
17.5 99.5 207.6 At5g43850 834407 ARD4 F:acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding;P:methionine salvage;C:cellular_component unknown;PBMFO O.I. C.G. H.G.
16.6 99.5 56.7 At5g24160 832482 SQE6 (SQUALENE MONOXYGENASE 6) F:squalene monooxygenase activity, oxidoreductase activity, FAD binding;P:sterol biosynthetic process;C:endomembrane system, integral to membrane;OBFMPA O.I. C.G. H.G.
15.9 99.5 135.2 At3g18250 821353 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMFO O.I. C.G. H.G.
14.6 99.4 243.1 At1g66100 842924 thionin, putative Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. O.I. C.G. H.G.
13.6 99.4 26.0 At3g17070 820964 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
13.2 99.4 43.8 At2g03310 814860 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.1 99.4 42.4 At5g36220 833619 CYP81D1 (CYTOCHROME P450 81D1) member of CYP81D O.I. C.G. H.G.
12.0 99.3 182.0 At2g33380 817901 RD20 (RESPONSIVE TO DESSICATION 20) Encodes a calcium binding protein whose mRNA is induced upon treatment with NaCl, ABA and in response to dessication. mRNA expression under drought conditions is apparent particularly in leaves and flowers. O.I. C.G. H.G.
12.0 99.3 42.6 At5g66490 836781 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
11.9 99.3 194.5 At2g43530 818954 trypsin inhibitor, putative Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
11.7 99.3 77.4 At1g65500 842862 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
11.7 99.3 29.2 At1g26390 839181 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAM O.I. C.G. H.G.
11.3 99.3 451.8 At3g49110 824072 PRXCA (PEROXIDASE CA) Class III peroxidase Perx33. Expressed in roots. Located in the cell wall. Involved in cell elongation. Expression activated by light. May play a role in generating H2O2 during defense response. O.I. C.G. H.G.
11.2 99.2 90.3 At3g26170 822218 CYP71B19 putative cytochrome P450 O.I. C.G. H.G.
11.2 99.2 64.9 At3g26290 822232 CYP71B26 putative cytochrome P450 O.I. C.G. H.G.
11.2 99.2 47.1 At3g47480 823902 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOB O.I. C.G. H.G.
11.1 99.2 110.8 At5g24150 832480 SQP1 squalene monooxygenase gene homolog O.I. C.G. H.G.
11.1 99.2 12.5 At1g48000 841218 MYB112 (myb domain protein 112) Encodes a putative transcription factor (MYB112). O.I. C.G. H.G.
10.9 99.2 71.3 At1g68620 843192 hydrolase F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
10.9 99.2 41.8 At1g09240 837444 NAS3 (NICOTIANAMINE SYNTHASE 3) Encodes a nicotianamine synthase. O.I. C.G. H.G.
10.6 99.2 100.0 At1g56300 842083 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding, response to cyclopentenone;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
10.4 99.2 178.2 At1g19670 838554 ATCLH1 (ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1) Chlorophyllase is the first enzyme involved in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to yield chlorophyllide and phytol. AtCLH1 lacks a typical signal sequence for the chloroplast. Its expression is induced rapidly by methyljasmonate, a known promoter of senescence and chlorophyll degradation. O.I. C.G. H.G.
10.2 99.2 153.6 At4g19170 827655 NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4) chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenase O.I. C.G. H.G.
9.8 99.1 9.7 At4g13410 826972 ATCSLA15 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
9.7 99.1 320.3 At2g25450 817083 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to ACC oxidase O.I. C.G. H.G.
9.7 99.1 74.8 At5g07010 830592 ST2A (SULFOTRANSFERASE 2A) Encodes a sulfotransferase that acts specifically on 11- and 12-hydroxyjasmonic acid. Transcript levels for this enzyme are increased by treatments with jasmonic acid (JA), 12-hydroxyJA, JA-isoleucine, and 12-oxyphytodienoic acid (a JA precursor). O.I. C.G. H.G.
9.7 99.1 46.5 At3g26280 822231 CYP71B4 cytochrome P450 monooxygenase O.I. C.G. H.G.
9.6 99.1 356.2 At3g25760 822167 AOC1 (ALLENE OXIDE CYCLASE 1) encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is induced during senescence, a process that involves jasmonic acid signalling pathway. O.I. C.G. H.G.
9.6 99.1 271.3 At2g38870 818471 protease inhibitor, putative Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860. O.I. C.G. H.G.
9.6 99.1 57.6 At3g60690 825240 auxin-responsive family protein F:unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
9.5 99.1 94.2 At3g61220 825294 short-chain dehydrogenase/reductase (SDR) family protein F:(-)-menthol dehydrogenase activity, oxidoreductase activity, (+)-neomenthol dehydrogenase activity;P:defense response;C:plasma membrane;BOMFPA O.I. C.G. H.G.
9.3 99.1 290.0 At5g03350 831863 legume lectin family protein F:carbohydrate binding, sugar binding;P:biological_process unknown;C:apoplast, cell wall, chloroplast;PBO O.I. C.G. H.G.
9.3 99.1 50.3 At1g52000 841629 jacalin lectin family protein F:molecular_function unknown;P:response to salt stress;C:cellular_component unknown;BOMPFVA O.I. C.G. H.G.
9.2 99.1 308.1 At5g59320 836051 LTP3 (LIPID TRANSFER PROTEIN 3) Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
9.0 99.1 34.3 At3g11090 820280 LBD21 (LOB DOMAIN-CONTAINING PROTEIN 21) F:unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
9.0 99.1 16.4 At3g11580 820331 DNA-binding protein, putative F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. C.G. H.G.
8.8 99.0 62.8 At3g51430 824306 YLS2 strictosidine synthase-like protein O.I. C.G. H.G.
8.7 99.0 82.5 At5g39520 833948 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO O.I. C.G. H.G.
8.6 99.0 308.3 At1g73260 843660 trypsin and protease inhibitor family protein / Kunitz family protein F:endopeptidase inhibitor activity;P:response to salt stress;C:mitochondrion;PO O.I. C.G. H.G.
8.6 99.0 32.8 At1g09500 837475 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
154.6	99.9	292.7	At3g55970	824763	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
132.0	99.9	259.5	At1g76960	844031	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
88.6	99.9	366.2	At2g39030	818489	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
58.5	99.8	87.6	At1g56650	842120	PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1)	Encodes a putative MYB domain containing transcription factor involved in anthocyanin metabolism and radical scavenging. Essential for the sucrose-mediated expression of the dihydroflavonol reductase gene.	O.I.	C.G.	H.G.
50.1	99.8	89.3	At4g37150	829869	MES9 (METHYL ESTERASE 9)	Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES9 appears to be involved in MeSA hydrolysis in planta. Expression of MES9 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
49.9	99.8	217.3	At4g27260	828834	WES1	encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin.	O.I.	C.G.	H.G.
39.7	99.8	331.1	At2g43510	818952	ATTI1	Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory.	O.I.	C.G.	H.G.
34.9	99.7	128.2	At1g70810	843418	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO	O.I.	C.G.	H.G.
31.9	99.7	108.8	At1g53885	841826	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
31.1	99.7	74.5	At4g17470	827458	palmitoyl protein thioesterase family protein	F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
30.2	99.7	65.1	At1g53870	841824	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.3	99.7	103.3	At2g29350	817484	SAG13	senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenase	O.I.	C.G.	H.G.
27.2	99.7	89.4	At2g34810	818046	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to jasmonic acid stimulus, response to wounding;C:endomembrane system;FBPOAM	O.I.	C.G.	H.G.
23.7	99.6	175.3	At4g08870	826458	arginase, putative	Encodes one of the two arginase in the genome. Gene expression is enhanced by methyl jasmonate treatment.	O.I.	C.G.	H.G.
23.0	99.6	286.5	At4g12490	826861	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:defense response to fungus, lipid transport;C:unknown;PBOMVFA	O.I.	C.G.	H.G.
21.0	99.6	95.0	At3g44450	823570	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.6	99.6	50.8	At1g14230	837984	nucleoside phosphatase family protein / GDA1/CD39 family protein	F:hydrolase activity;P:unknown;C:unknown;MFPOB	O.I.	C.G.	H.G.
19.4	99.6	219.8	At2g43570	818959	chitinase, putative	F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMV	O.I.	C.G.	H.G.
19.2	99.6	376.4	At4g23600	828460	CORI3 (CORONATINE INDUCED 1)	Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding.	O.I.	C.G.	H.G.
18.4	99.5	423.3	At5g24770	832546	VSP2 (VEGETATIVE STORAGE PROTEIN 2)	Has acid phosphatase activity dependent on the presence of divalent cations (Mg2+, Co2+, Zn2+, Mn2+) and anti-insect activity. Insects fed with the protein show a retarded development. Induced in response to abscisic acid, jasmonic acid, salt, water deficiency and wounding.	O.I.	C.G.	H.G.
18.2	99.5	141.4	At1g52890	841722	ANAC019 (Arabidopsis NAC domain containing protein 19)	encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro.	O.I.	C.G.	H.G.
17.5	99.5	207.6	At5g43850	834407	ARD4	F:acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding;P:methionine salvage;C:cellular_component unknown;PBMFO	O.I.	C.G.	H.G.
16.6	99.5	56.7	At5g24160	832482	SQE6 (SQUALENE MONOXYGENASE 6)	F:squalene monooxygenase activity, oxidoreductase activity, FAD binding;P:sterol biosynthetic process;C:endomembrane system, integral to membrane;OBFMPA	O.I.	C.G.	H.G.
15.9	99.5	135.2	At3g18250	821353	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMFO	O.I.	C.G.	H.G.
14.6	99.4	243.1	At1g66100	842924	thionin, putative	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.	O.I.	C.G.	H.G.
13.6	99.4	26.0	At3g17070	820964	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
13.2	99.4	43.8	At2g03310	814860	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.1	99.4	42.4	At5g36220	833619	CYP81D1 (CYTOCHROME P450 81D1)	member of CYP81D	O.I.	C.G.	H.G.
12.0	99.3	182.0	At2g33380	817901	RD20 (RESPONSIVE TO DESSICATION 20)	Encodes a calcium binding protein whose mRNA is induced upon treatment with NaCl, ABA and in response to dessication. mRNA expression under drought conditions is apparent particularly in leaves and flowers.	O.I.	C.G.	H.G.
12.0	99.3	42.6	At5g66490	836781	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
11.9	99.3	194.5	At2g43530	818954	trypsin inhibitor, putative	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
11.7	99.3	77.4	At1g65500	842862	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
11.7	99.3	29.2	At1g26390	839181	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAM	O.I.	C.G.	H.G.
11.3	99.3	451.8	At3g49110	824072	PRXCA (PEROXIDASE CA)	Class III peroxidase Perx33. Expressed in roots. Located in the cell wall. Involved in cell elongation. Expression activated by light. May play a role in generating H2O2 during defense response.	O.I.	C.G.	H.G.
11.2	99.2	90.3	At3g26170	822218	CYP71B19	putative cytochrome P450	O.I.	C.G.	H.G.
11.2	99.2	64.9	At3g26290	822232	CYP71B26	putative cytochrome P450	O.I.	C.G.	H.G.
11.2	99.2	47.1	At3g47480	823902	calcium-binding EF hand family protein	F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOB	O.I.	C.G.	H.G.
11.1	99.2	110.8	At5g24150	832480	SQP1	squalene monooxygenase gene homolog	O.I.	C.G.	H.G.
11.1	99.2	12.5	At1g48000	841218	MYB112 (myb domain protein 112)	Encodes a putative transcription factor (MYB112).	O.I.	C.G.	H.G.
10.9	99.2	71.3	At1g68620	843192	hydrolase	F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
10.9	99.2	41.8	At1g09240	837444	NAS3 (NICOTIANAMINE SYNTHASE 3)	Encodes a nicotianamine synthase.	O.I.	C.G.	H.G.
10.6	99.2	100.0	At1g56300	842083	DNAJ heat shock N-terminal domain-containing protein	F:heat shock protein binding;P:protein folding, response to cyclopentenone;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
10.4	99.2	178.2	At1g19670	838554	ATCLH1 (ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1)	Chlorophyllase is the first enzyme involved in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to yield chlorophyllide and phytol. AtCLH1 lacks a typical signal sequence for the chloroplast. Its expression is induced rapidly by methyljasmonate, a known promoter of senescence and chlorophyll degradation.	O.I.	C.G.	H.G.
10.2	99.2	153.6	At4g19170	827655	NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4)	chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenase	O.I.	C.G.	H.G.
9.8	99.1	9.7	At4g13410	826972	ATCSLA15	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
9.7	99.1	320.3	At2g25450	817083	2-oxoglutarate-dependent dioxygenase, putative	encodes a protein whose sequence is similar to ACC oxidase	O.I.	C.G.	H.G.
9.7	99.1	74.8	At5g07010	830592	ST2A (SULFOTRANSFERASE 2A)	Encodes a sulfotransferase that acts specifically on 11- and 12-hydroxyjasmonic acid. Transcript levels for this enzyme are increased by treatments with jasmonic acid (JA), 12-hydroxyJA, JA-isoleucine, and 12-oxyphytodienoic acid (a JA precursor).	O.I.	C.G.	H.G.
9.7	99.1	46.5	At3g26280	822231	CYP71B4	cytochrome P450 monooxygenase	O.I.	C.G.	H.G.
9.6	99.1	356.2	At3g25760	822167	AOC1 (ALLENE OXIDE CYCLASE 1)	encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is induced during senescence, a process that involves jasmonic acid signalling pathway.	O.I.	C.G.	H.G.
9.6	99.1	271.3	At2g38870	818471	protease inhibitor, putative	Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.	O.I.	C.G.	H.G.
9.6	99.1	57.6	At3g60690	825240	auxin-responsive family protein	F:unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
9.5	99.1	94.2	At3g61220	825294	short-chain dehydrogenase/reductase (SDR) family protein	F:(-)-menthol dehydrogenase activity, oxidoreductase activity, (+)-neomenthol dehydrogenase activity;P:defense response;C:plasma membrane;BOMFPA	O.I.	C.G.	H.G.
9.3	99.1	290.0	At5g03350	831863	legume lectin family protein	F:carbohydrate binding, sugar binding;P:biological_process unknown;C:apoplast, cell wall, chloroplast;PBO	O.I.	C.G.	H.G.
9.3	99.1	50.3	At1g52000	841629	jacalin lectin family protein	F:molecular_function unknown;P:response to salt stress;C:cellular_component unknown;BOMPFVA	O.I.	C.G.	H.G.
9.2	99.1	308.1	At5g59320	836051	LTP3 (LIPID TRANSFER PROTEIN 3)	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
9.0	99.1	34.3	At3g11090	820280	LBD21 (LOB DOMAIN-CONTAINING PROTEIN 21)	F:unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
9.0	99.1	16.4	At3g11580	820331	DNA-binding protein, putative	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P	O.I.	C.G.	H.G.
8.8	99.0	62.8	At3g51430	824306	YLS2	strictosidine synthase-like protein	O.I.	C.G.	H.G.
8.7	99.0	82.5	At5g39520	833948	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO	O.I.	C.G.	H.G.
8.6	99.0	308.3	At1g73260	843660	trypsin and protease inhibitor family protein / Kunitz family protein	F:endopeptidase inhibitor activity;P:response to salt stress;C:mitochondrion;PO	O.I.	C.G.	H.G.
8.6	99.0	32.8	At1g09500	837475	cinnamyl-alcohol dehydrogenase family / CAD family	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase	O.I.	C.G.	H.G.

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GSM ID	GSM151705
Assay name	gh3.5-1D 48 hpi, biological replicate 3
GSE experiment	GSE6556: Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)

Microarray experiments to specifically-expressed genes

GSM ID GSM151705 Assay name gh3.5-1D 48 hpi, biological replicate 3 GSE experiment GSE6556: Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)

GSM ID GSM151705

Assay name gh3.5-1D 48 hpi, biological replicate 3

GSE experiment GSE6556: Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)