CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM151694

Assay name Col-0 uninoculated, biological replicate 1

GSE experiment GSE6556: Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
85.3 99.9 95.5 At1g13650 837926 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
25.5 99.7 148.1 At1g02820 839304 late embryogenesis abundant 3 family protein / LEA3 family protein F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P O.I. C.G. H.G.
22.6 99.6 97.8 At5g64770 836598 unknown protein F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
20.9 99.6 167.3 At5g55620 835656 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
16.0 99.5 25.2 At1g69523 843286 UbiE/COQ5 methyltransferase family protein F:methyltransferase activity;P:metabolic process;C:chloroplast;BOFAMP O.I. C.G. H.G.
14.0 99.4 238.3 At1g66100 842924 thionin, putative Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. O.I. C.G. H.G.
14.0 99.4 44.3 At1g53870 841824 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.8 99.4 113.6 At3g61220 825294 short-chain dehydrogenase/reductase (SDR) family protein F:(-)-menthol dehydrogenase activity, oxidoreductase activity, (+)-neomenthol dehydrogenase activity;P:defense response;C:plasma membrane;BOMFPA O.I. C.G. H.G.
13.5 99.4 1.2 At2g16820 816183 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
12.7 99.3 13.4 At1g75250 843862 ATRL6 (ARABIDOPSIS RAD-LIKE 6) F:transcription factor activity;P:regulation of transcription;C:unknown;PMO O.I. C.G. H.G.
12.3 99.3 189.4 At5g65730 836702 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:response to water deprivation;C:endomembrane system, cell wall, apoplast;PFBO O.I. C.G. H.G.
12.3 99.3 120.1 At4g38840 830039 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus, response to cold;C:plasma membrane;PO O.I. C.G. H.G.
11.7 99.3 256.2 At4g04020 825714 FIB (FIBRILLIN) Fibrillin precursor protein. The fibrillin preprotein, but not the mature protein interacts with ABI2. Regulated by abscisic acid response regulators. Involved in abscisic acid-mediated photoprotection. O.I. C.G. H.G.
11.6 99.3 210.7 At2g23590 816891 MES8 (METHYL ESTERASE 8) Encodes a protein shown to have carboxylesterase activity in vitro. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
11.1 99.2 24.8 At1g73870 843723 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;PO O.I. C.G. H.G.
11.1 99.2 23.9 At2g15020 815991 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
11.0 99.2 68.6 At3g44450 823570 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
11.0 99.2 30.3 At5g01790 831868 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
10.7 99.2 272.5 At5g23060 832370 CaS (Calcium sensing receptor) F:unknown;P:unknown;C:thylakoid, mitochondrion, chloroplast thylakoid membrane, chloroplast;PBOFM O.I. C.G. H.G.
10.7 99.2 162.3 At5g43850 834407 ARD4 F:acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding;P:methionine salvage;C:cellular_component unknown;PBMFO O.I. C.G. H.G.
10.7 99.2 142.8 At5g57345 835840 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO O.I. C.G. H.G.
10.6 99.2 15.4 At4g38850 830040 SAUR15 (SMALL AUXIN UPREGULATED 15) mRNA is rapidly induced by auxin and is very short-lived. Has been used as a reporter gene in studying auxin mutants. O.I. C.G. H.G.
10.6 99.2 12.1 At1g29460 839822 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;P O.I. C.G. H.G.
10.5 99.2 104.0 At1g55960 842047 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MPO O.I. C.G. H.G.
10.5 99.2 53.0 At4g30993 829225 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
10.1 99.2 91.4 At2g15050 815994 LTP Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
9.9 99.1 127.6 At1g78680 844204 ATGGH2 (gamma-glutamyl hydrolase 2) The Arabidopsis protein AtGGH2 is a gamma-glutamyl hydrolase acting specifically on monoglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole. O.I. C.G. H.G.
9.9 99.1 40.8 At5g59080 836025 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:chloroplast;P O.I. C.G. H.G.
9.8 99.1 61.9 At1g14280 837989 PKS2 (PHYTOCHROME KINASE SUBSTRATE 2) Encodes phytochrome kinase substrate 2. PKS proteins are critical for hypocotyl phototropism. O.I. C.G. H.G.
9.6 99.1 38.4 At3g26960 822314 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
9.4 99.1 27.9 At5g62140 836334 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO O.I. C.G. H.G.
9.3 99.1 36.7 At2g03310 814860 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.2 99.1 21.5 At1g18810 838463 phytochrome kinase substrate-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV O.I. C.G. H.G.
8.8 99.0 21.2 At5g22390 832300 unknown protein F:unknown;P:unknown;C:unknown;PMOF O.I. C.G. H.G.
8.7 99.0 93.3 At4g04840 825821 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein F:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;BOMPFAV O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
85.3	99.9	95.5	At1g13650	837926	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
25.5	99.7	148.1	At1g02820	839304	late embryogenesis abundant 3 family protein / LEA3 family protein	F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P	O.I.	C.G.	H.G.
22.6	99.6	97.8	At5g64770	836598	unknown protein	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
20.9	99.6	167.3	At5g55620	835656	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.0	99.5	25.2	At1g69523	843286	UbiE/COQ5 methyltransferase family protein	F:methyltransferase activity;P:metabolic process;C:chloroplast;BOFAMP	O.I.	C.G.	H.G.
14.0	99.4	238.3	At1g66100	842924	thionin, putative	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.	O.I.	C.G.	H.G.
14.0	99.4	44.3	At1g53870	841824	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.8	99.4	113.6	At3g61220	825294	short-chain dehydrogenase/reductase (SDR) family protein	F:(-)-menthol dehydrogenase activity, oxidoreductase activity, (+)-neomenthol dehydrogenase activity;P:defense response;C:plasma membrane;BOMFPA	O.I.	C.G.	H.G.
13.5	99.4	1.2	At2g16820	816183	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
12.7	99.3	13.4	At1g75250	843862	ATRL6 (ARABIDOPSIS RAD-LIKE 6)	F:transcription factor activity;P:regulation of transcription;C:unknown;PMO	O.I.	C.G.	H.G.
12.3	99.3	189.4	At5g65730	836702	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:response to water deprivation;C:endomembrane system, cell wall, apoplast;PFBO	O.I.	C.G.	H.G.
12.3	99.3	120.1	At4g38840	830039	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus, response to cold;C:plasma membrane;PO	O.I.	C.G.	H.G.
11.7	99.3	256.2	At4g04020	825714	FIB (FIBRILLIN)	Fibrillin precursor protein. The fibrillin preprotein, but not the mature protein interacts with ABI2. Regulated by abscisic acid response regulators. Involved in abscisic acid-mediated photoprotection.	O.I.	C.G.	H.G.
11.6	99.3	210.7	At2g23590	816891	MES8 (METHYL ESTERASE 8)	Encodes a protein shown to have carboxylesterase activity in vitro. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
11.1	99.2	24.8	At1g73870	843723	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;PO	O.I.	C.G.	H.G.
11.1	99.2	23.9	At2g15020	815991	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.0	99.2	68.6	At3g44450	823570	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.0	99.2	30.3	At5g01790	831868	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
10.7	99.2	272.5	At5g23060	832370	CaS (Calcium sensing receptor)	F:unknown;P:unknown;C:thylakoid, mitochondrion, chloroplast thylakoid membrane, chloroplast;PBOFM	O.I.	C.G.	H.G.
10.7	99.2	162.3	At5g43850	834407	ARD4	F:acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding;P:methionine salvage;C:cellular_component unknown;PBMFO	O.I.	C.G.	H.G.
10.7	99.2	142.8	At5g57345	835840	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO	O.I.	C.G.	H.G.
10.6	99.2	15.4	At4g38850	830040	SAUR15 (SMALL AUXIN UPREGULATED 15)	mRNA is rapidly induced by auxin and is very short-lived. Has been used as a reporter gene in studying auxin mutants.	O.I.	C.G.	H.G.
10.6	99.2	12.1	At1g29460	839822	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;P	O.I.	C.G.	H.G.
10.5	99.2	104.0	At1g55960	842047	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPO	O.I.	C.G.	H.G.
10.5	99.2	53.0	At4g30993	829225	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
10.1	99.2	91.4	At2g15050	815994	LTP	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
9.9	99.1	127.6	At1g78680	844204	ATGGH2 (gamma-glutamyl hydrolase 2)	The Arabidopsis protein AtGGH2 is a gamma-glutamyl hydrolase acting specifically on monoglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole.	O.I.	C.G.	H.G.
9.9	99.1	40.8	At5g59080	836025	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:chloroplast;P	O.I.	C.G.	H.G.
9.8	99.1	61.9	At1g14280	837989	PKS2 (PHYTOCHROME KINASE SUBSTRATE 2)	Encodes phytochrome kinase substrate 2. PKS proteins are critical for hypocotyl phototropism.	O.I.	C.G.	H.G.
9.6	99.1	38.4	At3g26960	822314	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
9.4	99.1	27.9	At5g62140	836334	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO	O.I.	C.G.	H.G.
9.3	99.1	36.7	At2g03310	814860	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.2	99.1	21.5	At1g18810	838463	phytochrome kinase substrate-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV	O.I.	C.G.	H.G.
8.8	99.0	21.2	At5g22390	832300	unknown protein	F:unknown;P:unknown;C:unknown;PMOF	O.I.	C.G.	H.G.
8.7	99.0	93.3	At4g04840	825821	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	F:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;BOMPFAV	O.I.	C.G.	H.G.

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GSM ID	GSM151694
Assay name	Col-0 uninoculated, biological replicate 1
GSE experiment	GSE6556: Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)

Microarray experiments to specifically-expressed genes

GSM ID GSM151694 Assay name Col-0 uninoculated, biological replicate 1 GSE experiment GSE6556: Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)

GSM ID GSM151694

Assay name Col-0 uninoculated, biological replicate 1

GSE experiment GSE6556: Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)