CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM147966

Assay name lec1-1 Globular Stage Seed 2

GSE experiment GSE1051: Seed development in LEAFY COTYLEDON1 mutants

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
649.7 100.0 189.8 At3g60900 825261 FLA10 F:unknown;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;OBPMFVA O.I. C.G. H.G.
574.9 100.0 145.3 At3g59030 825072 TT12 (TRANSPARENT TESTA 12) Encodes a proton antiporter. Involved in the transportation of proanthocyanidin precursors into the vacuole. In vitro transport experiments showed that cyanidin-3-O-glucoside (anthocyanin) was an effective substrate, whereas the proanthocyanidin precursor epicatechin was not transported. However catechin-3-O-glucoside inhibited anthocyanin transport in a dose-dependent manner suggesting that glycosylated epicatechin is the in vivo substrate. Recessive mutation has strong reduction of proanthocyanidin deposition in vacuoles and has reduced dormancy. Expressed in the endothelium of ovules and developing seeds. O.I. C.G. H.G.
455.1 100.0 57.1 At5g46040 834645 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport, response to nematode;C:membrane;BPMOF O.I. C.G. H.G.
412.1 100.0 97.3 At1g17260 838297 AHA10 (Autoinhibited H(+)-ATPase isoform 10) belongs to H+-APTase gene family, involved in proanthocyanidin biosynthesis, disturbs the vacuolar biogenesis and acidification process O.I. C.G. H.G.
403.5 100.0 61.1 At3g17600 821026 IAA31 (INDOLE-3-ACETIC ACID INDUCIBLE 31) Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA31 shares several residues with the conserved domain II region, believed to act as a degron in many of the rapidly degraded Aux/IAA family members. An IAA31 fusion protein is quite long-lived, but can be degraded more rapidly in the presence of auxin. Unlike many other family members, IAA31 transcript levels do not rise in response to auxin. Nevertheless, overexpression of IAA31 leads to defects in auxin-related processes such as gravitropism, root development, shoot development, and cotyledon vascular development. O.I. C.G. H.G.
397.6 100.0 250.7 At3g49270 824088 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO O.I. C.G. H.G.
378.3 100.0 346.4 At1g61720 842469 BAN (BANYULS) Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. O.I. C.G. H.G.
369.0 100.0 168.6 At1g11590 837702 pectin methylesterase, putative F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOM O.I. C.G. H.G.
356.3 100.0 215.0 At5g51950 835270 glucose-methanol-choline (GMC) oxidoreductase family protein F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:response to salt stress;C:endomembrane system;OBFMPVA O.I. C.G. H.G.
343.1 100.0 247.2 At1g24540 839069 CYP86C1 member of CYP86C O.I. C.G. H.G.
319.8 100.0 76.8 At1g02940 839479 GSTF5 (GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
307.5 100.0 337.1 At3g20520 821598 SVL3 (SHV3-LIKE 3) F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOM O.I. C.G. H.G.
299.2 100.0 125.4 At5g58500 835963 LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5) F:molecular_function unknown;P:biological_process unknown;C:unknown;PM O.I. C.G. H.G.
296.4 100.0 316.0 At4g12890 826901 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF O.I. C.G. H.G.
289.6 100.0 94.9 At1g71690 843495 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB O.I. C.G. H.G.
286.5 100.0 109.6 At1g49800 841403 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
276.3 100.0 377.0 At5g49180 834977 pectinesterase family protein Encodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds. O.I. C.G. H.G.
273.1 100.0 84.8 At4g17480 827459 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO O.I. C.G. H.G.
264.8 100.0 466.9 At1g56100 842062 pectinesterase inhibitor domain-containing protein F:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;OMFPBAV O.I. C.G. H.G.
261.2 100.0 54.1 At5g55320 835625 membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related F:acyltransferase activity;P:unknown;C:unknown;BPOF O.I. C.G. H.G.
253.8 100.0 32.2 At2g45840 819192 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFBOV O.I. C.G. H.G.
251.4 100.0 74.7 At5g13670 831212 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;BOPAM O.I. C.G. H.G.
244.0 100.0 38.3 At1g19190 838502 hydrolase F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOPMFAV O.I. C.G. H.G.
224.6 100.0 146.2 At2g21430 816682 cysteine proteinase A494, putative / thiol protease, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
224.6 100.0 79.7 At1g34580 840362 monosaccharide transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA O.I. C.G. H.G.
223.6 100.0 146.4 At1g10540 837595 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV O.I. C.G. H.G.
220.9 100.0 146.6 At4g26590 828766 OPT5 (OLIGOPEPTIDE TRANSPORTER 5) oligopeptide transporter O.I. C.G. H.G.
218.3 100.0 348.7 At2g46960 819310 CYP709B1 member of CYP709B O.I. C.G. H.G.
216.7 100.0 324.3 At5g47350 834782 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO O.I. C.G. H.G.
188.5 100.0 46.2 At4g09820 826571 TT8 (TRANSPARENT TESTA 8) TT8 is a regulation factor that acts in a concerted action with TT1, PAP1 and TTG1 on the regulation of flavonoid pathways, namely proanthocyanidin and anthocyanin biosynthesis. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Also important for important for marginal trichome development. O.I. C.G. H.G.
186.6 100.0 108.5 At5g14130 831263 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
179.2 100.0 93.0 At3g48410 823999 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;BPOFMA O.I. C.G. H.G.
179.1 100.0 96.2 At1g09790 837508 COBL6 (COBRA-LIKE PROTEIN 6 PRECURSOR) F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
179.0 100.0 55.4 At5g44360 834462 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM O.I. C.G. H.G.
176.3 100.0 72.1 At5g66330 836765 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA O.I. C.G. H.G.
176.2 100.0 73.8 At4g32170 829349 CYP96A2 member of CYP96A O.I. C.G. H.G.
176.1 100.0 324.9 At3g20210 821565 DELTA-VPE Encodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat. O.I. C.G. H.G.
170.0 100.0 145.6 At5g56300 835729 GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2) A member of the Arabidopsis SABATH methyltransferase gene family. Encodes GAMT2, a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs, resulting in the methyl esters of GAs (MeGAs). Expressed most highly in the siliques during seed development. O.I. C.G. H.G.
160.6 99.9 380.4 At2g38900 818474 serine protease inhibitor, potato inhibitor I-type family protein Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860. O.I. C.G. H.G.
156.3 99.9 96.1 At5g24910 832560 CYP714A1 member of CYP714A O.I. C.G. H.G.
153.0 99.9 90.3 At1g30840 839967 ATPUP4 Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. O.I. C.G. H.G.
152.0 99.9 101.8 At1g79840 844323 GL2 (GLABRA 2) Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER. O.I. C.G. H.G.
150.3 99.9 96.5 At5g51480 835222 SKS2 (SKU5 SIMILAR 2) F:oxidoreductase activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;FBPMOA O.I. C.G. H.G.
149.2 99.9 96.2 At3g48580 824018 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PBFOA O.I. C.G. H.G.
149.2 99.9 75.4 At4g24260 828527 ATGH9A3 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A3) Encodes a protein with similarity to endo-1,4-b-glucanases. KOR3 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia. O.I. C.G. H.G.
148.5 99.9 274.1 At5g17220 831586 ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems. O.I. C.G. H.G.
147.2 99.9 173.5 At3g29810 822697 COBL2 (COBRA-LIKE PROTEIN 2 PRECURSOR) F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;P O.I. C.G. H.G.
144.2 99.9 54.7 At1g20550 838643 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
140.8 99.9 109.7 At1g23010 838909 LPR1 (Low Phosphate Root1) Encodes a protein with multicopper oxidase activity. O.I. C.G. H.G.
140.0 99.9 65.6 At1g30220 839902 INT2 (INOSITOL TRANSPORTER 2) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAV O.I. C.G. H.G.
137.8 99.9 403.5 At4g12910 826903 scpl20 (serine carboxypeptidase-like 20) F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOB O.I. C.G. H.G.
135.9 99.9 284.1 At3g57240 824891 BG3 (BETA-1,3-GLUCANASE 3) encodes a member of glycosyl hydrolase family 17 O.I. C.G. H.G.
133.8 99.9 155.0 At1g78780 844214 pathogenesis-related family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFM O.I. C.G. H.G.
133.5 99.9 109.5 At2g41990 818799 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
129.3 99.9 96.6 At1g16390 838209 ATOCT3 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 3) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:unknown;C:membrane;BMFPOA O.I. C.G. H.G.
125.5 99.9 139.1 At2g46720 819284 KCS13 (3-KETOACYL-COA SYNTHASE 13) Encodes KCS13, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
124.4 99.9 425.5 At4g15750 827253 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
122.6 99.9 210.1 At1g06550 837166 enoyl-CoA hydratase/isomerase family protein F:3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity;P:fatty acid beta-oxidation, metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
121.2 99.9 118.6 At4g21630 828250 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM O.I. C.G. H.G.
119.1 99.9 168.1 At4g09960 826586 STK (SEEDSTICK) a MADS box transcription factor expressed in the carpel and ovules O.I. C.G. H.G.
116.5 99.9 116.7 At3g58780 825047 SHP1 (SHATTERPROOF 1) One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells. O.I. C.G. H.G.
115.5 99.9 61.4 At1g25510 839137 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO O.I. C.G. H.G.
111.7 99.9 78.2 At5g55250 835618 IAMT1 (IAA CARBOXYLMETHYLTRANSFERASE 1) Encodes an enzyme which specifically converts IAA to its methyl ester form MelIAA. This gene belongs to the family of carboxyl methyltransferases whose members catalyze the transfer of the methyl group from S-adenosyl-L-methionine to carboxylic acid-containing substrates to form small molecule methyl esters. Expression of TCP genes is downregulated in mutant iamt1-D. O.I. C.G. H.G.
109.4 99.9 101.0 At1g51460 841571 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV O.I. C.G. H.G.
105.4 99.9 36.7 At2g42860 818886 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPV O.I. C.G. H.G.
103.2 99.9 53.9 At5g01180 831725 PTR5 (PEPTIDE TRANSPORTER 5) Encodes a dipeptide transporter expressed in pollen and ovules during early seed development. GFP-tagged PTR5 localizes to the plasma membrane. O.I. C.G. H.G.
102.2 99.9 130.2 At2g39510 818536 nodulin MtN21 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;BOPAM O.I. C.G. H.G.
100.7 99.9 343.8 At5g42800 834291 DFR (DIHYDROFLAVONOL 4-REDUCTASE) dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins. O.I. C.G. H.G.
98.2 99.9 56.1 At3g25260 822120 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF O.I. C.G. H.G.
96.5 99.9 133.4 At5g02540 831913 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
96.3 99.9 178.2 At3g05600 819726 epoxide hydrolase, putative F:epoxide hydrolase activity, catalytic activity;P:unknown;C:unknown;BOMPFA O.I. C.G. H.G.
95.8 99.9 148.6 At2g23910 816923 cinnamoyl-CoA reductase-related F:coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, cellular metabolic process, metabolic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
94.8 99.9 25.4 At2g32750 817835 exostosin family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;POMF O.I. C.G. H.G.
94.7 99.9 77.5 At1g65730 842884 YSL7 (YELLOW STRIPE LIKE 7) Arabidopsis thaliana metal-nicotianamine transporter YSL4 O.I. C.G. H.G.
94.7 99.9 72.6 At1g06520 837163 GPAT1 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1) Encodes a membrane associated mitochondrial localized protein with glycerol-3-phosphate acyltransferase activity.Expressed in flower buds and siliques. Homozygous mutant plants are male sterile and have abnormal glycerolipid levels. O.I. C.G. H.G.
92.6 99.9 37.5 At5g58782 835993 dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMP O.I. C.G. H.G.
92.2 99.9 84.4 At2g27880 817334 AGO5 (ARGONAUTE 5) F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBV O.I. C.G. H.G.
92.1 99.9 31.8 At3g28960 822536 amino acid transporter family protein F:amino acid transmembrane transporter activity;P:amino acid transport;C:plasma membrane, membrane;MPFOBAV O.I. C.G. H.G.
90.2 99.9 27.9 At5g53100 835390 oxidoreductase, putative F:oxidoreductase activity, binding, catalytic activity;P:multicellular organismal development, metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
90.0 99.9 68.8 At3g49050 824066 lipase class 3 family protein / calmodulin-binding heat-shock protein, putative F:triacylglycerol lipase activity, calmodulin binding;P:lipid catabolic process, lipid metabolic process;C:endomembrane system;MPOFB O.I. C.G. H.G.
89.7 99.9 135.8 At2g42830 818883 SHP2 (SHATTERPROOF 2) AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG). O.I. C.G. H.G.
88.5 99.9 49.4 At5g35550 833520 TT2 (TRANSPARENT TESTA 2) TT2 encodes a R2R3 MYB domain putative transcription factor that acts as a key determinant in the proanthocyanidin accumulation of developing seed. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. O.I. C.G. H.G.
88.3 99.9 337.2 At4g22870 828386 leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putative F:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
88.2 99.9 214.3 At5g05270 830409 chalcone-flavanone isomerase family protein F:chalcone isomerase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;P O.I. C.G. H.G.
88.0 99.9 78.3 At5g60140 836136 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;BOMFPVA O.I. C.G. H.G.
85.2 99.9 54.2 At1g09540 837480 MYB61 (MYB DOMAIN PROTEIN 61) Encodes putative transcription factor. Mutants lack of mucilage extrusion from the seeds during imbibition. Reduced quantities of mucilage are deposited during the development of the seed coat epidermis in myb61 mutants. Expressed in guard cells,loss of function mutations show an increase in stomatal pore opening suggesting a role in ABA independent regulation of stomatal pore size. O.I. C.G. H.G.
83.8 99.9 39.9 At5g01200 831676 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMF O.I. C.G. H.G.
83.4 99.9 377.9 At5g62740 836395 band 7 family protein F:unknown;P:N-terminal protein myristoylation;C:plasma membrane, vacuole, membrane;BOMFPAV O.I. C.G. H.G.
82.7 99.9 91.5 At3g20470 3768804 GRP5 (GLYCINE-RICH PROTEIN 5) encodes a glycine-rich protein that is expressed more abundantly in immature seed pods than in stems and leaves. Expression is not detected in roots or flowers. O.I. C.G. H.G.
82.2 99.9 103.4 At2g27130 817255 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to plasma membrane, anchored to membrane;P O.I. C.G. H.G.
81.5 99.9 227.9 At1g45130 841080 BGAL5 (beta-galactosidase 5) F:cation binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;BPMFOA O.I. C.G. H.G.
81.0 99.9 76.8 At4g26790 828786 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
80.7 99.9 44.4 At5g44700 834499 GSO2 (GASSHO 2) Encodes GASSHO2 (GSO2), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO2 and a homolog GSO1 (At4g20140) are required for the formation of a normal epidermal surface during embryogenesis. O.I. C.G. H.G.
79.9 99.9 593.5 At4g12960 826908 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF O.I. C.G. H.G.
79.7 99.9 146.5 At4g24040 828504 TRE1 (TREHALASE 1) Encodes a trehalase, member of Glycoside Hydrolase Family 37. O.I. C.G. H.G.
76.2 99.9 142.7 At5g07990 830693 TT7 (TRANSPARENT TESTA 7) Required for flavonoid 3' hydroxylase activity. O.I. C.G. H.G.
72.8 99.9 158.5 At1g73080 843639 PEPR1 (PEP1 receptor 1) Encodes a leucine-rich repeat receptor kinase. Functions as a receptor for AtPep1 to amplify innate immunity response to pathogen attacks. O.I. C.G. H.G.
72.7 99.9 211.1 At5g62210 836342 embryo-specific protein-related F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOFVBA O.I. C.G. H.G.
71.7 99.9 283.4 At2g14900 815979 gibberellin-regulated family protein F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;P O.I. C.G. H.G.
71.0 99.9 103.6 At5g65710 836700 HSL2 (HAESA-Like 2) F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
649.7	100.0	189.8	At3g60900	825261	FLA10	F:unknown;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;OBPMFVA	O.I.	C.G.	H.G.
574.9	100.0	145.3	At3g59030	825072	TT12 (TRANSPARENT TESTA 12)	Encodes a proton antiporter. Involved in the transportation of proanthocyanidin precursors into the vacuole. In vitro transport experiments showed that cyanidin-3-O-glucoside (anthocyanin) was an effective substrate, whereas the proanthocyanidin precursor epicatechin was not transported. However catechin-3-O-glucoside inhibited anthocyanin transport in a dose-dependent manner suggesting that glycosylated epicatechin is the in vivo substrate. Recessive mutation has strong reduction of proanthocyanidin deposition in vacuoles and has reduced dormancy. Expressed in the endothelium of ovules and developing seeds.	O.I.	C.G.	H.G.
455.1	100.0	57.1	At5g46040	834645	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport, response to nematode;C:membrane;BPMOF	O.I.	C.G.	H.G.
412.1	100.0	97.3	At1g17260	838297	AHA10 (Autoinhibited H(+)-ATPase isoform 10)	belongs to H+-APTase gene family, involved in proanthocyanidin biosynthesis, disturbs the vacuolar biogenesis and acidification process	O.I.	C.G.	H.G.
403.5	100.0	61.1	At3g17600	821026	IAA31 (INDOLE-3-ACETIC ACID INDUCIBLE 31)	Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA31 shares several residues with the conserved domain II region, believed to act as a degron in many of the rapidly degraded Aux/IAA family members. An IAA31 fusion protein is quite long-lived, but can be degraded more rapidly in the presence of auxin. Unlike many other family members, IAA31 transcript levels do not rise in response to auxin. Nevertheless, overexpression of IAA31 leads to defects in auxin-related processes such as gravitropism, root development, shoot development, and cotyledon vascular development.	O.I.	C.G.	H.G.
397.6	100.0	250.7	At3g49270	824088	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO	O.I.	C.G.	H.G.
378.3	100.0	346.4	At1g61720	842469	BAN (BANYULS)	Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.	O.I.	C.G.	H.G.
369.0	100.0	168.6	At1g11590	837702	pectin methylesterase, putative	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOM	O.I.	C.G.	H.G.
356.3	100.0	215.0	At5g51950	835270	glucose-methanol-choline (GMC) oxidoreductase family protein	F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:response to salt stress;C:endomembrane system;OBFMPVA	O.I.	C.G.	H.G.
343.1	100.0	247.2	At1g24540	839069	CYP86C1	member of CYP86C	O.I.	C.G.	H.G.
319.8	100.0	76.8	At1g02940	839479	GSTF5 (GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5)	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
307.5	100.0	337.1	At3g20520	821598	SVL3 (SHV3-LIKE 3)	F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOM	O.I.	C.G.	H.G.
299.2	100.0	125.4	At5g58500	835963	LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5)	F:molecular_function unknown;P:biological_process unknown;C:unknown;PM	O.I.	C.G.	H.G.
296.4	100.0	316.0	At4g12890	826901	gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein	F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF	O.I.	C.G.	H.G.
289.6	100.0	94.9	At1g71690	843495	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB	O.I.	C.G.	H.G.
286.5	100.0	109.6	At1g49800	841403	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
276.3	100.0	377.0	At5g49180	834977	pectinesterase family protein	Encodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds.	O.I.	C.G.	H.G.
273.1	100.0	84.8	At4g17480	827459	palmitoyl protein thioesterase family protein	F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
264.8	100.0	466.9	At1g56100	842062	pectinesterase inhibitor domain-containing protein	F:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;OMFPBAV	O.I.	C.G.	H.G.
261.2	100.0	54.1	At5g55320	835625	membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related	F:acyltransferase activity;P:unknown;C:unknown;BPOF	O.I.	C.G.	H.G.
253.8	100.0	32.2	At2g45840	819192	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFBOV	O.I.	C.G.	H.G.
251.4	100.0	74.7	At5g13670	831212	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;BOPAM	O.I.	C.G.	H.G.
244.0	100.0	38.3	At1g19190	838502	hydrolase	F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOPMFAV	O.I.	C.G.	H.G.
224.6	100.0	146.2	At2g21430	816682	cysteine proteinase A494, putative / thiol protease, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
224.6	100.0	79.7	At1g34580	840362	monosaccharide transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA	O.I.	C.G.	H.G.
223.6	100.0	146.4	At1g10540	837595	xanthine/uracil permease family protein	F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV	O.I.	C.G.	H.G.
220.9	100.0	146.6	At4g26590	828766	OPT5 (OLIGOPEPTIDE TRANSPORTER 5)	oligopeptide transporter	O.I.	C.G.	H.G.
218.3	100.0	348.7	At2g46960	819310	CYP709B1	member of CYP709B	O.I.	C.G.	H.G.
216.7	100.0	324.3	At5g47350	834782	palmitoyl protein thioesterase family protein	F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
188.5	100.0	46.2	At4g09820	826571	TT8 (TRANSPARENT TESTA 8)	TT8 is a regulation factor that acts in a concerted action with TT1, PAP1 and TTG1 on the regulation of flavonoid pathways, namely proanthocyanidin and anthocyanin biosynthesis. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Also important for important for marginal trichome development.	O.I.	C.G.	H.G.
186.6	100.0	108.5	At5g14130	831263	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
179.2	100.0	93.0	At3g48410	823999	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;BPOFMA	O.I.	C.G.	H.G.
179.1	100.0	96.2	At1g09790	837508	COBL6 (COBRA-LIKE PROTEIN 6 PRECURSOR)	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
179.0	100.0	55.4	At5g44360	834462	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM	O.I.	C.G.	H.G.
176.3	100.0	72.1	At5g66330	836765	leucine-rich repeat family protein	F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA	O.I.	C.G.	H.G.
176.2	100.0	73.8	At4g32170	829349	CYP96A2	member of CYP96A	O.I.	C.G.	H.G.
176.1	100.0	324.9	At3g20210	821565	DELTA-VPE	Encodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat.	O.I.	C.G.	H.G.
170.0	100.0	145.6	At5g56300	835729	GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2)	A member of the Arabidopsis SABATH methyltransferase gene family. Encodes GAMT2, a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs, resulting in the methyl esters of GAs (MeGAs). Expressed most highly in the siliques during seed development.	O.I.	C.G.	H.G.
160.6	99.9	380.4	At2g38900	818474	serine protease inhibitor, potato inhibitor I-type family protein	Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.	O.I.	C.G.	H.G.
156.3	99.9	96.1	At5g24910	832560	CYP714A1	member of CYP714A	O.I.	C.G.	H.G.
153.0	99.9	90.3	At1g30840	839967	ATPUP4	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	O.I.	C.G.	H.G.
152.0	99.9	101.8	At1g79840	844323	GL2 (GLABRA 2)	Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.	O.I.	C.G.	H.G.
150.3	99.9	96.5	At5g51480	835222	SKS2 (SKU5 SIMILAR 2)	F:oxidoreductase activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;FBPMOA	O.I.	C.G.	H.G.
149.2	99.9	96.2	At3g48580	824018	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PBFOA	O.I.	C.G.	H.G.
149.2	99.9	75.4	At4g24260	828527	ATGH9A3 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A3)	Encodes a protein with similarity to endo-1,4-b-glucanases. KOR3 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.	O.I.	C.G.	H.G.
148.5	99.9	274.1	At5g17220	831586	ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12)	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems.	O.I.	C.G.	H.G.
147.2	99.9	173.5	At3g29810	822697	COBL2 (COBRA-LIKE PROTEIN 2 PRECURSOR)	F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;P	O.I.	C.G.	H.G.
144.2	99.9	54.7	At1g20550	838643	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
140.8	99.9	109.7	At1g23010	838909	LPR1 (Low Phosphate Root1)	Encodes a protein with multicopper oxidase activity.	O.I.	C.G.	H.G.
140.0	99.9	65.6	At1g30220	839902	INT2 (INOSITOL TRANSPORTER 2)	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAV	O.I.	C.G.	H.G.
137.8	99.9	403.5	At4g12910	826903	scpl20 (serine carboxypeptidase-like 20)	F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOB	O.I.	C.G.	H.G.
135.9	99.9	284.1	At3g57240	824891	BG3 (BETA-1,3-GLUCANASE 3)	encodes a member of glycosyl hydrolase family 17	O.I.	C.G.	H.G.
133.8	99.9	155.0	At1g78780	844214	pathogenesis-related family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFM	O.I.	C.G.	H.G.
133.5	99.9	109.5	At2g41990	818799	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
129.3	99.9	96.6	At1g16390	838209	ATOCT3 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 3)	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:unknown;C:membrane;BMFPOA	O.I.	C.G.	H.G.
125.5	99.9	139.1	At2g46720	819284	KCS13 (3-KETOACYL-COA SYNTHASE 13)	Encodes KCS13, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
124.4	99.9	425.5	At4g15750	827253	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
122.6	99.9	210.1	At1g06550	837166	enoyl-CoA hydratase/isomerase family protein	F:3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity;P:fatty acid beta-oxidation, metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
121.2	99.9	118.6	At4g21630	828250	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM	O.I.	C.G.	H.G.
119.1	99.9	168.1	At4g09960	826586	STK (SEEDSTICK)	a MADS box transcription factor expressed in the carpel and ovules	O.I.	C.G.	H.G.
116.5	99.9	116.7	At3g58780	825047	SHP1 (SHATTERPROOF 1)	One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells.	O.I.	C.G.	H.G.
115.5	99.9	61.4	At1g25510	839137	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO	O.I.	C.G.	H.G.
111.7	99.9	78.2	At5g55250	835618	IAMT1 (IAA CARBOXYLMETHYLTRANSFERASE 1)	Encodes an enzyme which specifically converts IAA to its methyl ester form MelIAA. This gene belongs to the family of carboxyl methyltransferases whose members catalyze the transfer of the methyl group from S-adenosyl-L-methionine to carboxylic acid-containing substrates to form small molecule methyl esters. Expression of TCP genes is downregulated in mutant iamt1-D.	O.I.	C.G.	H.G.
109.4	99.9	101.0	At1g51460	841571	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV	O.I.	C.G.	H.G.
105.4	99.9	36.7	At2g42860	818886	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPV	O.I.	C.G.	H.G.
103.2	99.9	53.9	At5g01180	831725	PTR5 (PEPTIDE TRANSPORTER 5)	Encodes a dipeptide transporter expressed in pollen and ovules during early seed development. GFP-tagged PTR5 localizes to the plasma membrane.	O.I.	C.G.	H.G.
102.2	99.9	130.2	At2g39510	818536	nodulin MtN21 family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;BOPAM	O.I.	C.G.	H.G.
100.7	99.9	343.8	At5g42800	834291	DFR (DIHYDROFLAVONOL 4-REDUCTASE)	dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins.	O.I.	C.G.	H.G.
98.2	99.9	56.1	At3g25260	822120	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF	O.I.	C.G.	H.G.
96.5	99.9	133.4	At5g02540	831913	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
96.3	99.9	178.2	At3g05600	819726	epoxide hydrolase, putative	F:epoxide hydrolase activity, catalytic activity;P:unknown;C:unknown;BOMPFA	O.I.	C.G.	H.G.
95.8	99.9	148.6	At2g23910	816923	cinnamoyl-CoA reductase-related	F:coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, cellular metabolic process, metabolic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
94.8	99.9	25.4	At2g32750	817835	exostosin family protein	F:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;POMF	O.I.	C.G.	H.G.
94.7	99.9	77.5	At1g65730	842884	YSL7 (YELLOW STRIPE LIKE 7)	Arabidopsis thaliana metal-nicotianamine transporter YSL4	O.I.	C.G.	H.G.
94.7	99.9	72.6	At1g06520	837163	GPAT1 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1)	Encodes a membrane associated mitochondrial localized protein with glycerol-3-phosphate acyltransferase activity.Expressed in flower buds and siliques. Homozygous mutant plants are male sterile and have abnormal glycerolipid levels.	O.I.	C.G.	H.G.
92.6	99.9	37.5	At5g58782	835993	dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative	F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMP	O.I.	C.G.	H.G.
92.2	99.9	84.4	At2g27880	817334	AGO5 (ARGONAUTE 5)	F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBV	O.I.	C.G.	H.G.
92.1	99.9	31.8	At3g28960	822536	amino acid transporter family protein	F:amino acid transmembrane transporter activity;P:amino acid transport;C:plasma membrane, membrane;MPFOBAV	O.I.	C.G.	H.G.
90.2	99.9	27.9	At5g53100	835390	oxidoreductase, putative	F:oxidoreductase activity, binding, catalytic activity;P:multicellular organismal development, metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
90.0	99.9	68.8	At3g49050	824066	lipase class 3 family protein / calmodulin-binding heat-shock protein, putative	F:triacylglycerol lipase activity, calmodulin binding;P:lipid catabolic process, lipid metabolic process;C:endomembrane system;MPOFB	O.I.	C.G.	H.G.
89.7	99.9	135.8	At2g42830	818883	SHP2 (SHATTERPROOF 2)	AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG).	O.I.	C.G.	H.G.
88.5	99.9	49.4	At5g35550	833520	TT2 (TRANSPARENT TESTA 2)	TT2 encodes a R2R3 MYB domain putative transcription factor that acts as a key determinant in the proanthocyanidin accumulation of developing seed. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.	O.I.	C.G.	H.G.
88.3	99.9	337.2	At4g22870	828386	leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putative	F:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
88.2	99.9	214.3	At5g05270	830409	chalcone-flavanone isomerase family protein	F:chalcone isomerase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;P	O.I.	C.G.	H.G.
88.0	99.9	78.3	At5g60140	836136	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;BOMFPVA	O.I.	C.G.	H.G.
85.2	99.9	54.2	At1g09540	837480	MYB61 (MYB DOMAIN PROTEIN 61)	Encodes putative transcription factor. Mutants lack of mucilage extrusion from the seeds during imbibition. Reduced quantities of mucilage are deposited during the development of the seed coat epidermis in myb61 mutants. Expressed in guard cells,loss of function mutations show an increase in stomatal pore opening suggesting a role in ABA independent regulation of stomatal pore size.	O.I.	C.G.	H.G.
83.8	99.9	39.9	At5g01200	831676	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMF	O.I.	C.G.	H.G.
83.4	99.9	377.9	At5g62740	836395	band 7 family protein	F:unknown;P:N-terminal protein myristoylation;C:plasma membrane, vacuole, membrane;BOMFPAV	O.I.	C.G.	H.G.
82.7	99.9	91.5	At3g20470	3768804	GRP5 (GLYCINE-RICH PROTEIN 5)	encodes a glycine-rich protein that is expressed more abundantly in immature seed pods than in stems and leaves. Expression is not detected in roots or flowers.	O.I.	C.G.	H.G.
82.2	99.9	103.4	At2g27130	817255	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to plasma membrane, anchored to membrane;P	O.I.	C.G.	H.G.
81.5	99.9	227.9	At1g45130	841080	BGAL5 (beta-galactosidase 5)	F:cation binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;BPMFOA	O.I.	C.G.	H.G.
81.0	99.9	76.8	At4g26790	828786	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
80.7	99.9	44.4	At5g44700	834499	GSO2 (GASSHO 2)	Encodes GASSHO2 (GSO2), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO2 and a homolog GSO1 (At4g20140) are required for the formation of a normal epidermal surface during embryogenesis.	O.I.	C.G.	H.G.
79.9	99.9	593.5	At4g12960	826908	gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein	F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF	O.I.	C.G.	H.G.
79.7	99.9	146.5	At4g24040	828504	TRE1 (TREHALASE 1)	Encodes a trehalase, member of Glycoside Hydrolase Family 37.	O.I.	C.G.	H.G.
76.2	99.9	142.7	At5g07990	830693	TT7 (TRANSPARENT TESTA 7)	Required for flavonoid 3' hydroxylase activity.	O.I.	C.G.	H.G.
72.8	99.9	158.5	At1g73080	843639	PEPR1 (PEP1 receptor 1)	Encodes a leucine-rich repeat receptor kinase. Functions as a receptor for AtPep1 to amplify innate immunity response to pathogen attacks.	O.I.	C.G.	H.G.
72.7	99.9	211.1	At5g62210	836342	embryo-specific protein-related	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOFVBA	O.I.	C.G.	H.G.
71.7	99.9	283.4	At2g14900	815979	gibberellin-regulated family protein	F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
71.0	99.9	103.6	At5g65710	836700	HSL2 (HAESA-Like 2)	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.

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GSM ID	GSM147966
Assay name	lec1-1 Globular Stage Seed 2
GSE experiment	GSE1051: Seed development in LEAFY COTYLEDON1 mutants

Microarray experiments to specifically-expressed genes

GSM ID GSM147966 Assay name lec1-1 Globular Stage Seed 2 GSE experiment GSE1051: Seed development in LEAFY COTYLEDON1 mutants

GSM ID GSM147966

Assay name lec1-1 Globular Stage Seed 2

GSE experiment GSE1051: Seed development in LEAFY COTYLEDON1 mutants