CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM142906

Assay name WW002_ATH1_A2-willa-ISOX-REP2

GSE experiment GSE6181: Assembly of the cell wall pectic matrix.

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
469.7 100.0 78.8 At5g07570 830650 glycine/proline-rich protein F:unknown;P:unknown;C:endomembrane system;MBOFPVA O.I. C.G. H.G.
238.5 100.0 100.9 At3g22930 821865 calmodulin, putative F:calcium ion binding;P:biological_process unknown;C:unknown;MOFPBV O.I. C.G. H.G.
196.9 100.0 48.5 At1g36920 840600 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
169.9 100.0 83.7 At5g33300 833303 chromosome-associated kinesin-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
139.5 99.9 73.9 At1g36180 840522 ACC2 (ACETYL-COA CARBOXYLASE 2) acetyl-CoA carboxylase 2 (ACC2) O.I. C.G. H.G.
138.3 99.9 154.8 At1g33940 840291 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
120.8 99.9 39.3 At3g61340 825306 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
110.4 99.9 149.4 At5g06720 830561 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMV O.I. C.G. H.G.
107.2 99.9 91.0 At2g27880 817334 AGO5 (ARGONAUTE 5) F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBV O.I. C.G. H.G.
105.8 99.9 43.3 At2g07140 815283 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
102.4 99.9 92.4 At1g68290 843158 ENDO 2 (endonuclease 2) Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro. O.I. C.G. H.G.
101.1 99.9 62.7 At2g23890 816921 5' nucleotidase family protein F:5'-nucleotidase activity;P:biological_process unknown;C:mitochondrion;MPBO O.I. C.G. H.G.
95.9 99.9 134.3 At2g20800 816609 NDB4 (NAD(P)H dehydrogenase B4) F:NADH dehydrogenase activity;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion, plastid;BOFPAM O.I. C.G. H.G.
95.5 99.9 49.5 At5g25800 832649 exonuclease family protein F:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular;MFOPBV O.I. C.G. H.G.
92.3 99.9 62.9 At2g19850 816504 - F:molecular_function unknown;P:biological_process unknown;C:unknown;PMVO O.I. C.G. H.G.
90.8 99.9 34.2 At3g23060 821880 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFBV O.I. C.G. H.G.
84.5 99.9 105.2 At1g44900 841056 ATP binding / DNA binding / DNA-dependent ATPase F:DNA-dependent ATPase activity, DNA binding, ATP binding;P:DNA replication, DNA replication initiation;C:nucleus, chloroplast;MOBFPAV O.I. C.G. H.G.
83.8 99.9 39.3 At2g45280 819136 ATRAD51C Encodes a protein similar to RAD51C involved in double stranded break repair via homologous recombination. Sensitive to DSB induced by Mitomycin C and gamma irradiation, interacts with Atxrcc3 in yeast two-hybrid assay. Required for female meiosis but not critical for mitosis under normal conditions. O.I. C.G. H.G.
80.2 99.9 85.4 At1g67820 843108 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV O.I. C.G. H.G.
80.2 99.9 67.7 At2g28130 817359 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
75.6 99.9 57.7 At2g02880 814819 mucin-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMB O.I. C.G. H.G.
75.2 99.9 39.7 At5g44820 834512 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
73.1 99.9 91.3 At2g03430 814872 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cell wall;MOFBPVA O.I. C.G. H.G.
70.4 99.9 39.7 At5g02220 831792 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
68.6 99.9 167.0 At5g43330 834351 malate dehydrogenase, cytosolic, putative F:in 6 functions;P:cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process;C:plasma membrane;BOMPFA O.I. C.G. H.G.
66.8 99.8 41.8 At5g43980 834421 PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1) Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The cytoplasmic C-terminal portion of the protein is connected to the apoplastic N-terminal portion of the protein by a single transmembrane domain (TMD). It is transported to the plasmodesmata through the secretory pathway. PDLP1 has two DUF26 domains and a signal peptide, but the proper localization of the protein appears to depend on the TMD. O.I. C.G. H.G.
66.2 99.8 37.9 At4g02460 827997 PMS1 (POSTMEIOTIC SEGREGATION 1) Encodes a protein similar to PMS1 in yeast, a member of the family of eukaryotic MutL homologs. The protein appears to play a role in DNA mismatch repair and in the suppression of somatic homeologous recombination. O.I. C.G. H.G.
65.9 99.8 39.0 At5g15920 831449 structural maintenance of chromosomes (SMC) family protein (MSS2) F:ATP binding;P:chromosome segregation;C:chromosome, nucleus;MOBFPAV O.I. C.G. H.G.
65.8 99.8 21.6 At3g25080 822099 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
64.5 99.8 54.0 At1g20410 838630 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OAMPF O.I. C.G. H.G.
63.9 99.8 142.4 At2g41380 818736 embryo-abundant protein-related F:methyltransferase activity;P:response to cadmium ion;C:mitochondrion;BPFOMA O.I. C.G. H.G.
62.9 99.8 96.5 At4g18360 827563 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative F:glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity;P:metabolic process;C:peroxisome;OBFMPA O.I. C.G. H.G.
62.7 99.8 180.5 At2g28510 817399 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleolus;POMFB O.I. C.G. H.G.
62.5 99.8 18.6 At1g45100 841077 polyadenylate-binding protein, putative / PABP, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFPOB O.I. C.G. H.G.
62.2 99.8 32.2 At3g42725 823305 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
60.5 99.8 94.4 At4g25530 828658 FWA Encodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation. O.I. C.G. H.G.
60.5 99.8 20.2 At4g03230 828018 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
59.3 99.8 108.9 At2g47260 819339 WRKY23 member of WRKY Transcription Factor; Group I O.I. C.G. H.G.
59.0 99.8 48.0 At5g50130 835078 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
58.4 99.8 54.4 At5g26180 832687 NOL1/NOP2/sun family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFAPV O.I. C.G. H.G.
58.0 99.8 188.5 At1g69880 843324 ATH8 (thioredoxin H-type 8) F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAV O.I. C.G. H.G.
57.7 99.8 38.1 At5g08360 830734 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
57.6 99.8 82.7 At3g46540 823807 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
57.5 99.8 272.1 At2g44450 819052 BGLU15 (BETA GLUCOSIDASE 15) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plant-type cell wall;BOPMFA O.I. C.G. H.G.
55.3 99.8 63.8 At2g01640 814693 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF O.I. C.G. H.G.
55.1 99.8 71.2 At1g60030 842297 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAV O.I. C.G. H.G.
55.1 99.8 35.5 At5g61120 836233 - F:unknown;P:biological_process unknown;C:unknown;PMO O.I. C.G. H.G.
54.9 99.8 60.0 At3g11520 820325 CYCB1 Encodes a B-type mitotic cyclin. O.I. C.G. H.G.
54.6 99.8 40.6 At5g61740 836296 ATATH14 member of ATH subfamily O.I. C.G. H.G.
54.2 99.8 51.5 At3g50410 824205 OBP1 (OBF BINDING PROTEIN 1) Arabidopsis Dof protein containing a single 51-amino acid zinc finger DNA-binding domain, which may play an important roles in plant growth and development. O.I. C.G. H.G.
53.7 99.8 28.4 At4g00390 828200 transcription regulator F:transcription regulator activity;P:unknown;C:nucleolus;OMBFPVA O.I. C.G. H.G.
53.2 99.8 56.7 At1g51380 841562 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
52.5 99.8 71.2 At5g44560 834483 VPS2.2 F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOB O.I. C.G. H.G.
52.3 99.8 56.8 At2g28660 817415 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:chloroplast;OPMBF O.I. C.G. H.G.
51.7 99.8 94.9 At5g38890 833880 exoribonuclease-related F:RNA binding;P:biological_process unknown;C:cellular_component unknown;FMAOP O.I. C.G. H.G.
51.4 99.8 32.0 At3g56730 824840 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
50.1 99.8 71.8 At5g48310 834884 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
49.5 99.8 38.9 At1g33460 3766895 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
49.1 99.8 122.5 At5g49280 834988 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPFOBVA O.I. C.G. H.G.
48.5 99.8 14.9 At3g27620 822384 AOX1C encodes an isoform of alternate oxidase. expressed in all tissues examined and expression is not induced by antimycin A, an inhibitor of complex III in the mitochondrial respiratory chain. O.I. C.G. H.G.
47.9 99.8 47.1 At5g43310 834349 COP1-interacting protein-related F:unknown;P:unknown;C:plasma membrane, membrane;MOFPBV O.I. C.G. H.G.
47.6 99.8 115.8 At2g46930 819307 pectinacetylesterase, putative F:carboxylesterase activity;P:unknown;C:endomembrane system;PMOB O.I. C.G. H.G.
46.8 99.8 20.3 At4g35370 829690 nucleotide binding F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFOBPA O.I. C.G. H.G.
45.9 99.8 58.5 At5g05990 830486 mitochondrial glycoprotein family protein / MAM33 family protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, mitochondrial matrix;PFOM O.I. C.G. H.G.
45.7 99.8 15.0 At3g63480 825523 kinesin heavy chain, putative F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFP O.I. C.G. H.G.
45.4 99.8 41.1 At1g20350 838623 ATTIM17-1 mitochondrial inner membrane translocase O.I. C.G. H.G.
45.0 99.8 256.3 At2g07783 3768188 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
44.6 99.8 11.8 At1g66310 842948 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
44.3 99.8 30.7 At4g02820 828169 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB O.I. C.G. H.G.
44.2 99.8 30.5 At2g44510 819058 p21Cip1-binding protein-related F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MFOP O.I. C.G. H.G.
44.0 99.8 126.7 At2g04000 814926 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
44.0 99.8 48.4 At5g14180 831268 MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) F:catalytic activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;MFPBO O.I. C.G. H.G.
43.3 99.8 76.0 At1g68360 843165 zinc finger protein-related F:transcription factor activity;P:regulation of transcription;C:intracellular;PMO O.I. C.G. H.G.
43.3 99.8 59.3 At5g57100 835814 transporter-related F:unknown;P:unknown;C:membrane;PMFOB O.I. C.G. H.G.
42.9 99.8 146.7 At2g22480 816781 PFK5 (PHOSPHOFRUCTOKINASE 5) F:6-phosphofructokinase activity;P:glycolysis;C:6-phosphofructokinase complex, chloroplast;BOMFPAV O.I. C.G. H.G.
42.7 99.8 48.8 At2g47680 819381 zinc finger (CCCH type) helicase family protein F:helicase activity, zinc ion binding, nucleic acid binding, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:chloroplast;MBOFPV O.I. C.G. H.G.
42.5 99.8 23.1 At1g63540 842659 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOBPVA O.I. C.G. H.G.
42.0 99.8 45.9 At1g60080 842303 3' exoribonuclease family domain 1-containing protein F:3'-5'-exoribonuclease activity, RNA binding;P:RNA processing;C:cellular_component unknown;MAOFPB O.I. C.G. H.G.
41.8 99.8 48.8 At3g45960 823739 ATEXLA3 (arabidopsis thaliana expansin-like a3) member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
41.5 99.8 75.4 At2g03800 814906 GEK1 (GEKO1) encodes a D-aminoacyl-tRNA deacylase. Involved in detoxification of D-aminoacyl-tRNA. Mutants also show ethanol-hypersensitive phenotype. O.I. C.G. H.G.
41.3 99.8 10.4 At2g43270 818929 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
41.2 99.8 58.0 At4g02400 828039 - F:molecular_function unknown;P:rRNA processing;C:small-subunit processome;MOFBPVA O.I. C.G. H.G.
41.0 99.8 20.6 At5g18920 832010 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
40.6 99.8 38.8 At1g33030 840198 O-methyltransferase family 2 protein F:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOM O.I. C.G. H.G.
40.3 99.8 169.0 At4g02860 828159 catalytic F:catalytic activity;P:biosynthetic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
40.3 99.8 27.1 At5g50890 835161 - F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
40.2 99.8 164.6 At1g43910 840990 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
39.2 99.8 51.3 At1g66040 842917 VIM4 (VARIANT IN METHYLATION 4) predicted to encode a protein with an N-terminal PHD domain and two RING domains surrounding an SRA domain. Attempts to isolate ORTH4/VIM4 cDNA through RT-PCR were unsuccessful and analysis of the expression of this gene is difficult since it shares 99% nucleotide identity with ORTH5/VIM2. O.I. C.G. H.G.
39.1 99.8 14.8 At5g44010 834424 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
38.8 99.8 13.1 At3g59190 825088 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
38.7 99.8 38.6 At2g38340 818414 AP2 domain-containing transcription factor, putative (DRE2B) encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. O.I. C.G. H.G.
38.4 99.8 33.5 At2g01990 814730 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
38.0 99.8 93.7 At5g17650 831631 glycine/proline-rich protein F:unknown;P:unknown;C:unknown;MFPBOVA O.I. C.G. H.G.
37.9 99.8 115.7 At1g50490 841471 UBC20 (ubiquitin-conjugating enzyme 20) Encodes one of two ubiquitin-conjugating enzymes belonging to the E2-C gene family (the other being UBC19). Transcript is always found in diving cells, but also in other non-dividing cells. O.I. C.G. H.G.
37.8 99.8 78.0 At3g53540 824522 unknown protein F:unknown;P:unknown;C:plasma membrane;OMBFPAV O.I. C.G. H.G.
37.7 99.7 34.1 At3g16980 820954 NRPB9A One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At4g16265 O.I. C.G. H.G.
37.5 99.7 100.9 At2g21640 816702 - Encodes a protein of unknown function that is a marker for oxidative stress response. O.I. C.G. H.G.
37.4 99.7 48.1 At5g51480 835222 SKS2 (SKU5 SIMILAR 2) F:oxidoreductase activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;FBPMOA O.I. C.G. H.G.
37.2 99.7 24.7 At2g25320 817070 - F:unknown;P:unknown;C:chloroplast;MOBFPAV O.I. C.G. H.G.
37.0 99.7 50.9 At5g19320 832052 RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) Encodes RAN GTPase activating protein 2. The protein is localized to the nuclear envelope during interphase. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
469.7	100.0	78.8	At5g07570	830650	glycine/proline-rich protein	F:unknown;P:unknown;C:endomembrane system;MBOFPVA	O.I.	C.G.	H.G.
238.5	100.0	100.9	At3g22930	821865	calmodulin, putative	F:calcium ion binding;P:biological_process unknown;C:unknown;MOFPBV	O.I.	C.G.	H.G.
196.9	100.0	48.5	At1g36920	840600	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
169.9	100.0	83.7	At5g33300	833303	chromosome-associated kinesin-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
139.5	99.9	73.9	At1g36180	840522	ACC2 (ACETYL-COA CARBOXYLASE 2)	acetyl-CoA carboxylase 2 (ACC2)	O.I.	C.G.	H.G.
138.3	99.9	154.8	At1g33940	840291	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
120.8	99.9	39.3	At3g61340	825306	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
110.4	99.9	149.4	At5g06720	830561	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMV	O.I.	C.G.	H.G.
107.2	99.9	91.0	At2g27880	817334	AGO5 (ARGONAUTE 5)	F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBV	O.I.	C.G.	H.G.
105.8	99.9	43.3	At2g07140	815283	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
102.4	99.9	92.4	At1g68290	843158	ENDO 2 (endonuclease 2)	Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro.	O.I.	C.G.	H.G.
101.1	99.9	62.7	At2g23890	816921	5' nucleotidase family protein	F:5'-nucleotidase activity;P:biological_process unknown;C:mitochondrion;MPBO	O.I.	C.G.	H.G.
95.9	99.9	134.3	At2g20800	816609	NDB4 (NAD(P)H dehydrogenase B4)	F:NADH dehydrogenase activity;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion, plastid;BOFPAM	O.I.	C.G.	H.G.
95.5	99.9	49.5	At5g25800	832649	exonuclease family protein	F:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular;MFOPBV	O.I.	C.G.	H.G.
92.3	99.9	62.9	At2g19850	816504	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;PMVO	O.I.	C.G.	H.G.
90.8	99.9	34.2	At3g23060	821880	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFBV	O.I.	C.G.	H.G.
84.5	99.9	105.2	At1g44900	841056	ATP binding / DNA binding / DNA-dependent ATPase	F:DNA-dependent ATPase activity, DNA binding, ATP binding;P:DNA replication, DNA replication initiation;C:nucleus, chloroplast;MOBFPAV	O.I.	C.G.	H.G.
83.8	99.9	39.3	At2g45280	819136	ATRAD51C	Encodes a protein similar to RAD51C involved in double stranded break repair via homologous recombination. Sensitive to DSB induced by Mitomycin C and gamma irradiation, interacts with Atxrcc3 in yeast two-hybrid assay. Required for female meiosis but not critical for mitosis under normal conditions.	O.I.	C.G.	H.G.
80.2	99.9	85.4	At1g67820	843108	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV	O.I.	C.G.	H.G.
80.2	99.9	67.7	At2g28130	817359	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
75.6	99.9	57.7	At2g02880	814819	mucin-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMB	O.I.	C.G.	H.G.
75.2	99.9	39.7	At5g44820	834512	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
73.1	99.9	91.3	At2g03430	814872	ankyrin repeat family protein	F:protein binding;P:biological_process unknown;C:cell wall;MOFBPVA	O.I.	C.G.	H.G.
70.4	99.9	39.7	At5g02220	831792	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
68.6	99.9	167.0	At5g43330	834351	malate dehydrogenase, cytosolic, putative	F:in 6 functions;P:cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process;C:plasma membrane;BOMPFA	O.I.	C.G.	H.G.
66.8	99.8	41.8	At5g43980	834421	PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1)	Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The cytoplasmic C-terminal portion of the protein is connected to the apoplastic N-terminal portion of the protein by a single transmembrane domain (TMD). It is transported to the plasmodesmata through the secretory pathway. PDLP1 has two DUF26 domains and a signal peptide, but the proper localization of the protein appears to depend on the TMD.	O.I.	C.G.	H.G.
66.2	99.8	37.9	At4g02460	827997	PMS1 (POSTMEIOTIC SEGREGATION 1)	Encodes a protein similar to PMS1 in yeast, a member of the family of eukaryotic MutL homologs. The protein appears to play a role in DNA mismatch repair and in the suppression of somatic homeologous recombination.	O.I.	C.G.	H.G.
65.9	99.8	39.0	At5g15920	831449	structural maintenance of chromosomes (SMC) family protein (MSS2)	F:ATP binding;P:chromosome segregation;C:chromosome, nucleus;MOBFPAV	O.I.	C.G.	H.G.
65.8	99.8	21.6	At3g25080	822099	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
64.5	99.8	54.0	At1g20410	838630	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OAMPF	O.I.	C.G.	H.G.
63.9	99.8	142.4	At2g41380	818736	embryo-abundant protein-related	F:methyltransferase activity;P:response to cadmium ion;C:mitochondrion;BPFOMA	O.I.	C.G.	H.G.
62.9	99.8	96.5	At4g18360	827563	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	F:glycolate oxidase activity, electron carrier activity, oxidoreductase activity, FMN binding, catalytic activity;P:metabolic process;C:peroxisome;OBFMPA	O.I.	C.G.	H.G.
62.7	99.8	180.5	At2g28510	817399	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleolus;POMFB	O.I.	C.G.	H.G.
62.5	99.8	18.6	At1g45100	841077	polyadenylate-binding protein, putative / PABP, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFPOB	O.I.	C.G.	H.G.
62.2	99.8	32.2	At3g42725	823305	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
60.5	99.8	94.4	At4g25530	828658	FWA	Encodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation.	O.I.	C.G.	H.G.
60.5	99.8	20.2	At4g03230	828018	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding	F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
59.3	99.8	108.9	At2g47260	819339	WRKY23	member of WRKY Transcription Factor; Group I	O.I.	C.G.	H.G.
59.0	99.8	48.0	At5g50130	835078	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
58.4	99.8	54.4	At5g26180	832687	NOL1/NOP2/sun family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFAPV	O.I.	C.G.	H.G.
58.0	99.8	188.5	At1g69880	843324	ATH8 (thioredoxin H-type 8)	F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAV	O.I.	C.G.	H.G.
57.7	99.8	38.1	At5g08360	830734	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
57.6	99.8	82.7	At3g46540	823807	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
57.5	99.8	272.1	At2g44450	819052	BGLU15 (BETA GLUCOSIDASE 15)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plant-type cell wall;BOPMFA	O.I.	C.G.	H.G.
55.3	99.8	63.8	At2g01640	814693	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF	O.I.	C.G.	H.G.
55.1	99.8	71.2	At1g60030	842297	xanthine/uracil permease family protein	F:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAV	O.I.	C.G.	H.G.
55.1	99.8	35.5	At5g61120	836233	-	F:unknown;P:biological_process unknown;C:unknown;PMO	O.I.	C.G.	H.G.
54.9	99.8	60.0	At3g11520	820325	CYCB1	Encodes a B-type mitotic cyclin.	O.I.	C.G.	H.G.
54.6	99.8	40.6	At5g61740	836296	ATATH14	member of ATH subfamily	O.I.	C.G.	H.G.
54.2	99.8	51.5	At3g50410	824205	OBP1 (OBF BINDING PROTEIN 1)	Arabidopsis Dof protein containing a single 51-amino acid zinc finger DNA-binding domain, which may play an important roles in plant growth and development.	O.I.	C.G.	H.G.
53.7	99.8	28.4	At4g00390	828200	transcription regulator	F:transcription regulator activity;P:unknown;C:nucleolus;OMBFPVA	O.I.	C.G.	H.G.
53.2	99.8	56.7	At1g51380	841562	eukaryotic translation initiation factor 4A, putative / eIF-4A, putative	F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
52.5	99.8	71.2	At5g44560	834483	VPS2.2	F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOB	O.I.	C.G.	H.G.
52.3	99.8	56.8	At2g28660	817415	copper-binding family protein	F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:chloroplast;OPMBF	O.I.	C.G.	H.G.
51.7	99.8	94.9	At5g38890	833880	exoribonuclease-related	F:RNA binding;P:biological_process unknown;C:cellular_component unknown;FMAOP	O.I.	C.G.	H.G.
51.4	99.8	32.0	At3g56730	824840	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
50.1	99.8	71.8	At5g48310	834884	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
49.5	99.8	38.9	At1g33460	3766895	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
49.1	99.8	122.5	At5g49280	834988	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPFOBVA	O.I.	C.G.	H.G.
48.5	99.8	14.9	At3g27620	822384	AOX1C	encodes an isoform of alternate oxidase. expressed in all tissues examined and expression is not induced by antimycin A, an inhibitor of complex III in the mitochondrial respiratory chain.	O.I.	C.G.	H.G.
47.9	99.8	47.1	At5g43310	834349	COP1-interacting protein-related	F:unknown;P:unknown;C:plasma membrane, membrane;MOFPBV	O.I.	C.G.	H.G.
47.6	99.8	115.8	At2g46930	819307	pectinacetylesterase, putative	F:carboxylesterase activity;P:unknown;C:endomembrane system;PMOB	O.I.	C.G.	H.G.
46.8	99.8	20.3	At4g35370	829690	nucleotide binding	F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFOBPA	O.I.	C.G.	H.G.
45.9	99.8	58.5	At5g05990	830486	mitochondrial glycoprotein family protein / MAM33 family protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, mitochondrial matrix;PFOM	O.I.	C.G.	H.G.
45.7	99.8	15.0	At3g63480	825523	kinesin heavy chain, putative	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFP	O.I.	C.G.	H.G.
45.4	99.8	41.1	At1g20350	838623	ATTIM17-1	mitochondrial inner membrane translocase	O.I.	C.G.	H.G.
45.0	99.8	256.3	At2g07783	3768188	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
44.6	99.8	11.8	At1g66310	842948	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
44.3	99.8	30.7	At4g02820	828169	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
44.2	99.8	30.5	At2g44510	819058	p21Cip1-binding protein-related	F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MFOP	O.I.	C.G.	H.G.
44.0	99.8	126.7	At2g04000	814926	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
44.0	99.8	48.4	At5g14180	831268	MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1)	F:catalytic activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;MFPBO	O.I.	C.G.	H.G.
43.3	99.8	76.0	At1g68360	843165	zinc finger protein-related	F:transcription factor activity;P:regulation of transcription;C:intracellular;PMO	O.I.	C.G.	H.G.
43.3	99.8	59.3	At5g57100	835814	transporter-related	F:unknown;P:unknown;C:membrane;PMFOB	O.I.	C.G.	H.G.
42.9	99.8	146.7	At2g22480	816781	PFK5 (PHOSPHOFRUCTOKINASE 5)	F:6-phosphofructokinase activity;P:glycolysis;C:6-phosphofructokinase complex, chloroplast;BOMFPAV	O.I.	C.G.	H.G.
42.7	99.8	48.8	At2g47680	819381	zinc finger (CCCH type) helicase family protein	F:helicase activity, zinc ion binding, nucleic acid binding, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:chloroplast;MBOFPV	O.I.	C.G.	H.G.
42.5	99.8	23.1	At1g63540	842659	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOBPVA	O.I.	C.G.	H.G.
42.0	99.8	45.9	At1g60080	842303	3' exoribonuclease family domain 1-containing protein	F:3'-5'-exoribonuclease activity, RNA binding;P:RNA processing;C:cellular_component unknown;MAOFPB	O.I.	C.G.	H.G.
41.8	99.8	48.8	At3g45960	823739	ATEXLA3 (arabidopsis thaliana expansin-like a3)	member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
41.5	99.8	75.4	At2g03800	814906	GEK1 (GEKO1)	encodes a D-aminoacyl-tRNA deacylase. Involved in detoxification of D-aminoacyl-tRNA. Mutants also show ethanol-hypersensitive phenotype.	O.I.	C.G.	H.G.
41.3	99.8	10.4	At2g43270	818929	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
41.2	99.8	58.0	At4g02400	828039	-	F:molecular_function unknown;P:rRNA processing;C:small-subunit processome;MOFBPVA	O.I.	C.G.	H.G.
41.0	99.8	20.6	At5g18920	832010	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
40.6	99.8	38.8	At1g33030	840198	O-methyltransferase family 2 protein	F:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOM	O.I.	C.G.	H.G.
40.3	99.8	169.0	At4g02860	828159	catalytic	F:catalytic activity;P:biosynthetic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
40.3	99.8	27.1	At5g50890	835161	-	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
40.2	99.8	164.6	At1g43910	840990	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
39.2	99.8	51.3	At1g66040	842917	VIM4 (VARIANT IN METHYLATION 4)	predicted to encode a protein with an N-terminal PHD domain and two RING domains surrounding an SRA domain. Attempts to isolate ORTH4/VIM4 cDNA through RT-PCR were unsuccessful and analysis of the expression of this gene is difficult since it shares 99% nucleotide identity with ORTH5/VIM2.	O.I.	C.G.	H.G.
39.1	99.8	14.8	At5g44010	834424	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
38.8	99.8	13.1	At3g59190	825088	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
38.7	99.8	38.6	At2g38340	818414	AP2 domain-containing transcription factor, putative (DRE2B)	encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.	O.I.	C.G.	H.G.
38.4	99.8	33.5	At2g01990	814730	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
38.0	99.8	93.7	At5g17650	831631	glycine/proline-rich protein	F:unknown;P:unknown;C:unknown;MFPBOVA	O.I.	C.G.	H.G.
37.9	99.8	115.7	At1g50490	841471	UBC20 (ubiquitin-conjugating enzyme 20)	Encodes one of two ubiquitin-conjugating enzymes belonging to the E2-C gene family (the other being UBC19). Transcript is always found in diving cells, but also in other non-dividing cells.	O.I.	C.G.	H.G.
37.8	99.8	78.0	At3g53540	824522	unknown protein	F:unknown;P:unknown;C:plasma membrane;OMBFPAV	O.I.	C.G.	H.G.
37.7	99.7	34.1	At3g16980	820954	NRPB9A	One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At4g16265	O.I.	C.G.	H.G.
37.5	99.7	100.9	At2g21640	816702	-	Encodes a protein of unknown function that is a marker for oxidative stress response.	O.I.	C.G.	H.G.
37.4	99.7	48.1	At5g51480	835222	SKS2 (SKU5 SIMILAR 2)	F:oxidoreductase activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;FBPMOA	O.I.	C.G.	H.G.
37.2	99.7	24.7	At2g25320	817070	-	F:unknown;P:unknown;C:chloroplast;MOBFPAV	O.I.	C.G.	H.G.
37.0	99.7	50.9	At5g19320	832052	RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2)	Encodes RAN GTPase activating protein 2. The protein is localized to the nuclear envelope during interphase.	O.I.	C.G.	H.G.

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GSM ID	GSM142906
Assay name	WW002_ATH1_A2-willa-ISOX-REP2
GSE experiment	GSE6181: Assembly of the cell wall pectic matrix.

Microarray experiments to specifically-expressed genes

GSM ID GSM142906 Assay name WW002_ATH1_A2-willa-ISOX-REP2 GSE experiment GSE6181: Assembly of the cell wall pectic matrix.

GSM ID GSM142906

Assay name WW002_ATH1_A2-willa-ISOX-REP2

GSE experiment GSE6181: Assembly of the cell wall pectic matrix.