CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM142904

Assay name WW002_ATH1_A1-willa-CON-REP2

GSE experiment GSE6181: Assembly of the cell wall pectic matrix.

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1204.3 100.0 58.8 At4g21730 3770093 - pseudogene of N-ethylmaleimide sensitive factor (NSF) O.I. C.G. H.G.
556.5 100.0 161.0 At1g09080 837429 BIP3 F:ATP binding;P:protein folding, response to heat;C:endoplasmic reticulum lumen;OBMFPVA O.I. C.G. H.G.
509.8 100.0 182.7 At2g45920 819200 U-box domain-containing protein F:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;POMFBAV O.I. C.G. H.G.
459.7 100.0 146.5 At1g09180 837438 ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1) A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. O.I. C.G. H.G.
337.7 100.0 266.4 At2g02810 814811 UTR1 (UDP-GALACTOSE TRANSPORTER 1) Encodes a multitransmembrane hydrophobic protein that functions as transporter of UDP-galactose and UDP-glucose into the Golgi. Localized in the ER. Involved in the unfolded protein response, a mechanism that controls proper protein folding in the ER. O.I. C.G. H.G.
294.4 100.0 116.2 At5g43340 834352 PHT6 phosphate transporter O.I. C.G. H.G.
279.7 100.0 205.2 At2g45130 819120 SPX3 (SPX DOMAIN GENE 3) F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:cellular_component unknown;FMPO O.I. C.G. H.G.
276.4 100.0 57.5 At1g36920 840600 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
244.7 100.0 128.2 At1g44130 841016 nucellin protein, putative F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;POMF O.I. C.G. H.G.
240.1 100.0 101.3 At3g22930 821865 calmodulin, putative F:calcium ion binding;P:biological_process unknown;C:unknown;MOFPBV O.I. C.G. H.G.
239.7 100.0 58.2 At2g02730 814802 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
229.4 100.0 260.9 At2g11810 815657 MGDC MGD3 is the major enzyme for galactolipid metabolism during phosphate starvation. Does not contribute to galactolipid synthesis under P1-sufficient conditions. O.I. C.G. H.G.
219.7 100.0 139.0 At1g76360 843968 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA O.I. C.G. H.G.
218.8 100.0 241.9 At2g17280 816234 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;FOPB O.I. C.G. H.G.
193.9 100.0 81.9 At4g01010 826427 ATCNGC13 member of Cyclic nucleotide gated channel family O.I. C.G. H.G.
184.8 100.0 110.0 At5g18270 831945 ANAC087 F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
174.2 100.0 222.3 At1g35910 840493 trehalose-6-phosphate phosphatase, putative F:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:unknown;BPMOFA O.I. C.G. H.G.
170.9 100.0 218.9 At2g44460 819053 BGLU28 (BETA GLUCOSIDASE 28) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:membrane;BOPMFA O.I. C.G. H.G.
170.3 100.0 52.4 At3g44510 823576 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
169.4 100.0 37.2 At3g29220 822576 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
157.0 99.9 210.1 At5g22570 832320 WRKY38 member of WRKY Transcription Factor; Group III O.I. C.G. H.G.
156.0 99.9 309.0 At1g69880 843324 ATH8 (thioredoxin H-type 8) F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAV O.I. C.G. H.G.
153.2 99.9 74.2 At3g05630 819730 PLDP2 Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. Regulates vesicle trafficking. Required for auxin transport and distribution and hence auxin responses. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Plays a major role in phosphatidic acid production during phosphate deprivation. Induced upon Pi starvation in both shoots and roots. Involved in hydrolyzing phosphatidylcholine and phosphatidylethanolamine to produce diacylglycerol for digalactosyldiacylglycerol synthesis and free Pi to sustain other Pi-requiring processes. Does not appear to be involved in root hair patterning. O.I. C.G. H.G.
153.2 99.9 32.9 At2g19610 816480 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MFOP O.I. C.G. H.G.
152.5 99.9 174.3 At4g26200 828726 ACS7 Member of a family of proteins in Arabidopsis that encode 1-Amino-cyclopropane-1-carboxylate synthase, an enzyme involved in ethylene biosynthesis. Not expressed in response to IAA. O.I. C.G. H.G.
147.8 99.9 140.7 At3g22550 821826 senescence-associated protein-related F:molecular_function unknown;P:response to salt stress;C:unknown;P O.I. C.G. H.G.
144.8 99.9 169.3 At5g11920 831065 AtcwINV6 (6-&1-fructan exohydrolase) Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity. O.I. C.G. H.G.
140.0 99.9 83.2 At3g04060 819561 anac046 (Arabidopsis NAC domain containing protein 46) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
132.8 99.9 105.2 At1g68290 843158 ENDO 2 (endonuclease 2) Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro. O.I. C.G. H.G.
130.3 99.9 199.4 At3g29970 822700 germination protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
130.2 99.9 40.3 At3g47050 823858 glycosyl hydrolase family 3 protein F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:vacuole;BOFPAM O.I. C.G. H.G.
126.7 99.9 189.9 At2g01650 814694 PUX2 (PLANT UBX DOMAIN-CONTAINING PROTEIN 2) encodes a peripheral membrane protein that contains UBX domain and interacts with AtCDC48 in vitro and co-fractionates with membrane-associated but not soluble AtCDC48 in vivo. O.I. C.G. H.G.
125.9 99.9 39.0 At3g44520 - - O.I. C.G. H.G.
118.9 99.9 125.4 At2g02370 814768 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPMFA O.I. C.G. H.G.
110.3 99.9 74.1 At3g53150 824481 UGT73D1 (UDP-glucosyl transferase 73D1) F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOF O.I. C.G. H.G.
108.9 99.9 47.8 At1g69720 843308 ho3 (HEME OXYGENASE 3) Encodes a member (HO3) of the heme oxygenase family. O.I. C.G. H.G.
106.0 99.9 94.2 At1g65610 842872 KOR2 F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;PBMOF O.I. C.G. H.G.
105.0 99.9 310.8 At2g02800 814810 APK2B (PROTEIN KINASE 2B) Encodes protein kinase APK2b. O.I. C.G. H.G.
104.6 99.9 77.2 At2g28130 817359 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
103.0 99.9 48.8 At2g21510 816690 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
100.5 99.9 56.3 At4g30430 829166 TET9 (TETRASPANIN9) Member of TETRASPANIN family O.I. C.G. H.G.
99.5 99.9 47.8 At4g29770 829099 - Target of trans acting-siR480/255. O.I. C.G. H.G.
99.5 99.9 25.2 At3g57950 824964 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
98.8 99.9 116.3 At2g03800 814906 GEK1 (GEKO1) encodes a D-aminoacyl-tRNA deacylase. Involved in detoxification of D-aminoacyl-tRNA. Mutants also show ethanol-hypersensitive phenotype. O.I. C.G. H.G.
97.6 99.9 140.5 At5g06720 830561 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMV O.I. C.G. H.G.
92.7 99.9 84.6 At2g27880 817334 AGO5 (ARGONAUTE 5) F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBV O.I. C.G. H.G.
90.2 99.9 74.0 At1g52940 841727 PAP5 (PURPLE ACID PHOSPHATASE 5) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:cellular_component unknown;PBOMFA O.I. C.G. H.G.
88.7 99.9 47.7 At5g25800 832649 exonuclease family protein F:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular;MFOPBV O.I. C.G. H.G.
88.3 99.9 122.4 At2g02860 814817 SUT2 (SUCROSE TRANSPORTER 2) encodes a sucrose transporter in sieve elements and a number of sink tissues and cell types. Gene expression is induced by wounding. O.I. C.G. H.G.
85.3 99.9 72.4 At1g48970 841319 GTP binding / translation initiation factor F:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAPV O.I. C.G. H.G.
84.2 99.9 68.6 At2g47680 819381 zinc finger (CCCH type) helicase family protein F:helicase activity, zinc ion binding, nucleic acid binding, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:chloroplast;MBOFPV O.I. C.G. H.G.
83.5 99.9 73.5 At1g08310 837351 esterase/lipase/thioesterase family protein F:catalytic activity;P:biological_process unknown;C:unknown;BPOMFA O.I. C.G. H.G.
82.7 99.9 63.8 At1g10990 837642 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
81.9 99.9 56.4 At2g23890 816921 5' nucleotidase family protein F:5'-nucleotidase activity;P:biological_process unknown;C:mitochondrion;MPBO O.I. C.G. H.G.
81.4 99.9 35.5 At3g43110 823370 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
80.2 99.9 232.5 At1g43910 840990 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
80.1 99.9 120.0 At1g78780 844214 pathogenesis-related family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFM O.I. C.G. H.G.
79.7 99.9 290.8 At1g73010 843632 phosphatase F:phosphatase activity;P:metabolic process;C:cellular_component unknown;MPOBF O.I. C.G. H.G.
79.3 99.9 34.6 At2g21850 816721 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOF O.I. C.G. H.G.
78.8 99.9 115.2 At2g15860 816082 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
78.6 99.9 23.6 At3g25080 822099 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
78.0 99.9 46.3 At3g48080 823963 lipase class 3 family protein / disease resistance protein-related F:lipase activity, triacylglycerol lipase activity, signal transducer activity;P:lipid metabolic process;C:cellular_component unknown;POB O.I. C.G. H.G.
77.0 99.9 70.0 At3g13380 820538 BRL3 (BRI1-LIKE 3) Similar to BRI, brassinosteroid receptor protein. O.I. C.G. H.G.
76.7 99.9 103.2 At5g19875 832109 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;P O.I. C.G. H.G.
76.2 99.9 327.8 At5g24660 832538 LSU2 (RESPONSE TO LOW SULFUR 2) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
75.7 99.9 339.5 At4g25810 828686 XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6) xyloglucan endotransglycosylase-related protein (XTR6) O.I. C.G. H.G.
75.6 99.9 25.4 At1g44510 3767344 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
75.1 99.9 64.3 At5g39720 833968 AIG2L (AVIRULENCE INDUCED GENE 2 LIKE PROTEIN) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOFA O.I. C.G. H.G.
74.7 99.9 336.6 At5g20150 832137 SPX1 (SPX DOMAIN GENE 1) F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:nucleus;FMPOBA O.I. C.G. H.G.
74.0 99.9 80.7 At2g02230 814754 AtPP2-B1 (Phloem protein 2-B1) F:carbohydrate binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
73.8 99.9 53.2 At5g20320 832154 DCL4 (DICER-LIKE 4) Encodes an RNase III-like enzyme that catalyzes processing of trans-acting small interfering RNA precursors in a distinct small RNA biogenesis pathway. The protein is also involved in the production of 21-nt primary siRNAs from both inverted-repeat constructs and endogenous sequences, as well as the RDR6-dependent 21-nt secondary siRNAs involved in long-range cell-to-cell signaling. It binds DRB4, a ds-RNA binding protein. O.I. C.G. H.G.
73.7 99.9 111.0 At3g54150 824582 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA O.I. C.G. H.G.
72.1 99.9 35.5 At1g45150 841083 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOP O.I. C.G. H.G.
71.4 99.9 73.5 At4g00750 825923 dehydration-responsive family protein F:unknown;P:biological_process unknown;C:Golgi apparatus;PBO O.I. C.G. H.G.
70.5 99.9 35.7 At2g37890 818365 mitochondrial substrate carrier family protein F:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO O.I. C.G. H.G.
70.3 99.9 85.4 At2g20142 2745551 transmembrane receptor F:transmembrane receptor activity;P:signal transduction, innate immune response;C:intrinsic to membrane;P O.I. C.G. H.G.
68.8 99.9 50.5 At1g33030 840198 O-methyltransferase family 2 protein F:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOM O.I. C.G. H.G.
68.5 99.9 121.7 At5g44240 834447 haloacid dehalogenase-like hydrolase family protein F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, phospholipid transport, ATP biosynthetic process;C:integral to membrane, membrane;MBOFPAV O.I. C.G. H.G.
66.9 99.8 40.4 At1g72280 843560 AERO1 (Arabidopsis endoplasmic reticulum oxidoreductins 1) endoplasmic reticulum oxidoreductin O.I. C.G. H.G.
66.6 99.8 45.5 At2g04650 815007 ADP-glucose pyrophosphorylase family protein F:transferase activity, nucleotidyltransferase activity;P:biosynthetic process;C:cellular_component unknown;BOAMPF O.I. C.G. H.G.
66.0 99.8 47.9 At4g14390 827084 ankyrin repeat family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBVA O.I. C.G. H.G.
65.6 99.8 153.5 At2g02560 814786 CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED) Arabidopsis thaliana homolog of human CAND1 (cullin-associated and neddylation-dissociated). Putative similarity to TBP-interacting protein TIP120. Ubiquitously expressed in plant tissues throughout development. T-DNA insertion mutant plants were completely sterile and resistant to sirtinol and auxin, but not to gibberellins or brassinolide. Displayed developmental phenotypes similar to those of axr1, namely, short petioles, downwardly curling leaves, shorter inflorescence. Required for SCF function and appears to modulate SCF complex cycling. Physically interacts with CUL1. O.I. C.G. H.G.
65.5 99.8 122.6 At3g17420 821006 GPK1 serine/threonine protein kinase-like protein O.I. C.G. H.G.
65.2 99.8 78.5 At4g02880 828150 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
65.0 99.8 73.6 At3g48020 823957 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
64.7 99.8 171.8 At1g69850 843321 ATNRT1:2 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1:2) Encodes an inducible component of low-affinity nitrate uptake. mRNA found primarily in root hairs and the epidermis of roots. O.I. C.G. H.G.
64.2 99.8 63.2 At4g31240 829251 - F:unknown;P:cell redox homeostasis;C:cellular_component unknown;OMBP O.I. C.G. H.G.
63.6 99.8 286.2 At2g44450 819052 BGLU15 (BETA GLUCOSIDASE 15) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plant-type cell wall;BOPMFA O.I. C.G. H.G.
63.3 99.8 181.3 At2g28510 817399 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleolus;POMFB O.I. C.G. H.G.
61.9 99.8 43.3 At5g61740 836296 ATATH14 member of ATH subfamily O.I. C.G. H.G.
61.7 99.8 69.9 At1g70140 843350 ATFH8 (formin 8) Encodes a group I formin. Binds to F-actin barbed ends. Has severing actin filaments activity. Binds profilin. Involved in the initiation and tip growth of root hairs through regulation of actin cytoskeleton. O.I. C.G. H.G.
61.2 99.8 157.8 At5g43330 834351 malate dehydrogenase, cytosolic, putative F:in 6 functions;P:cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process;C:plasma membrane;BOMPFA O.I. C.G. H.G.
60.7 99.8 24.3 At3g61410 825313 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
60.6 99.8 126.3 At5g25440 832618 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:nucleus, cytoplasm;MPOBFVA O.I. C.G. H.G.
60.3 99.8 115.0 At1g35230 840412 AGP5 (ARABINOGALACTAN-PROTEIN 5) Encodes arabinogalactan-protein (AGP5). O.I. C.G. H.G.
60.2 99.8 93.2 At4g03960 825706 tyrosine specific protein phosphatase family protein F:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FPOBM O.I. C.G. H.G.
60.1 99.8 160.7 At1g49050 841328 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:unknown;PMFO O.I. C.G. H.G.
59.8 99.8 65.5 At5g42200 834225 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
59.2 99.8 95.5 At1g50510 841473 indigoidine synthase A family protein F:unknown;P:biological_process unknown;C:plasma membrane;OBFMP O.I. C.G. H.G.
59.2 99.8 59.7 At5g44170 834440 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOB O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
1204.3	100.0	58.8	At4g21730	3770093	-	pseudogene of N-ethylmaleimide sensitive factor (NSF)	O.I.	C.G.	H.G.
556.5	100.0	161.0	At1g09080	837429	BIP3	F:ATP binding;P:protein folding, response to heat;C:endoplasmic reticulum lumen;OBMFPVA	O.I.	C.G.	H.G.
509.8	100.0	182.7	At2g45920	819200	U-box domain-containing protein	F:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;POMFBAV	O.I.	C.G.	H.G.
459.7	100.0	146.5	At1g09180	837438	ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1)	A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.	O.I.	C.G.	H.G.
337.7	100.0	266.4	At2g02810	814811	UTR1 (UDP-GALACTOSE TRANSPORTER 1)	Encodes a multitransmembrane hydrophobic protein that functions as transporter of UDP-galactose and UDP-glucose into the Golgi. Localized in the ER. Involved in the unfolded protein response, a mechanism that controls proper protein folding in the ER.	O.I.	C.G.	H.G.
294.4	100.0	116.2	At5g43340	834352	PHT6	phosphate transporter	O.I.	C.G.	H.G.
279.7	100.0	205.2	At2g45130	819120	SPX3 (SPX DOMAIN GENE 3)	F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:cellular_component unknown;FMPO	O.I.	C.G.	H.G.
276.4	100.0	57.5	At1g36920	840600	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
244.7	100.0	128.2	At1g44130	841016	nucellin protein, putative	F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;POMF	O.I.	C.G.	H.G.
240.1	100.0	101.3	At3g22930	821865	calmodulin, putative	F:calcium ion binding;P:biological_process unknown;C:unknown;MOFPBV	O.I.	C.G.	H.G.
239.7	100.0	58.2	At2g02730	814802	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
229.4	100.0	260.9	At2g11810	815657	MGDC	MGD3 is the major enzyme for galactolipid metabolism during phosphate starvation. Does not contribute to galactolipid synthesis under P1-sufficient conditions.	O.I.	C.G.	H.G.
219.7	100.0	139.0	At1g76360	843968	protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA	O.I.	C.G.	H.G.
218.8	100.0	241.9	At2g17280	816234	phosphoglycerate/bisphosphoglycerate mutase family protein	F:catalytic activity;P:metabolic process;C:cellular_component unknown;FOPB	O.I.	C.G.	H.G.
193.9	100.0	81.9	At4g01010	826427	ATCNGC13	member of Cyclic nucleotide gated channel family	O.I.	C.G.	H.G.
184.8	100.0	110.0	At5g18270	831945	ANAC087	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
174.2	100.0	222.3	At1g35910	840493	trehalose-6-phosphate phosphatase, putative	F:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:unknown;BPMOFA	O.I.	C.G.	H.G.
170.9	100.0	218.9	At2g44460	819053	BGLU28 (BETA GLUCOSIDASE 28)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:membrane;BOPMFA	O.I.	C.G.	H.G.
170.3	100.0	52.4	At3g44510	823576	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
169.4	100.0	37.2	At3g29220	822576	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
157.0	99.9	210.1	At5g22570	832320	WRKY38	member of WRKY Transcription Factor; Group III	O.I.	C.G.	H.G.
156.0	99.9	309.0	At1g69880	843324	ATH8 (thioredoxin H-type 8)	F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAV	O.I.	C.G.	H.G.
153.2	99.9	74.2	At3g05630	819730	PLDP2	Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. Regulates vesicle trafficking. Required for auxin transport and distribution and hence auxin responses. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Plays a major role in phosphatidic acid production during phosphate deprivation. Induced upon Pi starvation in both shoots and roots. Involved in hydrolyzing phosphatidylcholine and phosphatidylethanolamine to produce diacylglycerol for digalactosyldiacylglycerol synthesis and free Pi to sustain other Pi-requiring processes. Does not appear to be involved in root hair patterning.	O.I.	C.G.	H.G.
153.2	99.9	32.9	At2g19610	816480	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MFOP	O.I.	C.G.	H.G.
152.5	99.9	174.3	At4g26200	828726	ACS7	Member of a family of proteins in Arabidopsis that encode 1-Amino-cyclopropane-1-carboxylate synthase, an enzyme involved in ethylene biosynthesis. Not expressed in response to IAA.	O.I.	C.G.	H.G.
147.8	99.9	140.7	At3g22550	821826	senescence-associated protein-related	F:molecular_function unknown;P:response to salt stress;C:unknown;P	O.I.	C.G.	H.G.
144.8	99.9	169.3	At5g11920	831065	AtcwINV6 (6-&1-fructan exohydrolase)	Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity.	O.I.	C.G.	H.G.
140.0	99.9	83.2	At3g04060	819561	anac046 (Arabidopsis NAC domain containing protein 46)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
132.8	99.9	105.2	At1g68290	843158	ENDO 2 (endonuclease 2)	Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro.	O.I.	C.G.	H.G.
130.3	99.9	199.4	At3g29970	822700	germination protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
130.2	99.9	40.3	At3g47050	823858	glycosyl hydrolase family 3 protein	F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:vacuole;BOFPAM	O.I.	C.G.	H.G.
126.7	99.9	189.9	At2g01650	814694	PUX2 (PLANT UBX DOMAIN-CONTAINING PROTEIN 2)	encodes a peripheral membrane protein that contains UBX domain and interacts with AtCDC48 in vitro and co-fractionates with membrane-associated but not soluble AtCDC48 in vivo.	O.I.	C.G.	H.G.
125.9	99.9	39.0	At3g44520		-	-	O.I.	C.G.	H.G.
118.9	99.9	125.4	At2g02370	814768	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPMFA	O.I.	C.G.	H.G.
110.3	99.9	74.1	At3g53150	824481	UGT73D1 (UDP-glucosyl transferase 73D1)	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOF	O.I.	C.G.	H.G.
108.9	99.9	47.8	At1g69720	843308	ho3 (HEME OXYGENASE 3)	Encodes a member (HO3) of the heme oxygenase family.	O.I.	C.G.	H.G.
106.0	99.9	94.2	At1g65610	842872	KOR2	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;PBMOF	O.I.	C.G.	H.G.
105.0	99.9	310.8	At2g02800	814810	APK2B (PROTEIN KINASE 2B)	Encodes protein kinase APK2b.	O.I.	C.G.	H.G.
104.6	99.9	77.2	At2g28130	817359	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
103.0	99.9	48.8	At2g21510	816690	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
100.5	99.9	56.3	At4g30430	829166	TET9 (TETRASPANIN9)	Member of TETRASPANIN family	O.I.	C.G.	H.G.
99.5	99.9	47.8	At4g29770	829099	-	Target of trans acting-siR480/255.	O.I.	C.G.	H.G.
99.5	99.9	25.2	At3g57950	824964	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
98.8	99.9	116.3	At2g03800	814906	GEK1 (GEKO1)	encodes a D-aminoacyl-tRNA deacylase. Involved in detoxification of D-aminoacyl-tRNA. Mutants also show ethanol-hypersensitive phenotype.	O.I.	C.G.	H.G.
97.6	99.9	140.5	At5g06720	830561	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMV	O.I.	C.G.	H.G.
92.7	99.9	84.6	At2g27880	817334	AGO5 (ARGONAUTE 5)	F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBV	O.I.	C.G.	H.G.
90.2	99.9	74.0	At1g52940	841727	PAP5 (PURPLE ACID PHOSPHATASE 5)	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:cellular_component unknown;PBOMFA	O.I.	C.G.	H.G.
88.7	99.9	47.7	At5g25800	832649	exonuclease family protein	F:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular;MFOPBV	O.I.	C.G.	H.G.
88.3	99.9	122.4	At2g02860	814817	SUT2 (SUCROSE TRANSPORTER 2)	encodes a sucrose transporter in sieve elements and a number of sink tissues and cell types. Gene expression is induced by wounding.	O.I.	C.G.	H.G.
85.3	99.9	72.4	At1g48970	841319	GTP binding / translation initiation factor	F:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAPV	O.I.	C.G.	H.G.
84.2	99.9	68.6	At2g47680	819381	zinc finger (CCCH type) helicase family protein	F:helicase activity, zinc ion binding, nucleic acid binding, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:chloroplast;MBOFPV	O.I.	C.G.	H.G.
83.5	99.9	73.5	At1g08310	837351	esterase/lipase/thioesterase family protein	F:catalytic activity;P:biological_process unknown;C:unknown;BPOMFA	O.I.	C.G.	H.G.
82.7	99.9	63.8	At1g10990	837642	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
81.9	99.9	56.4	At2g23890	816921	5' nucleotidase family protein	F:5'-nucleotidase activity;P:biological_process unknown;C:mitochondrion;MPBO	O.I.	C.G.	H.G.
81.4	99.9	35.5	At3g43110	823370	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
80.2	99.9	232.5	At1g43910	840990	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
80.1	99.9	120.0	At1g78780	844214	pathogenesis-related family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFM	O.I.	C.G.	H.G.
79.7	99.9	290.8	At1g73010	843632	phosphatase	F:phosphatase activity;P:metabolic process;C:cellular_component unknown;MPOBF	O.I.	C.G.	H.G.
79.3	99.9	34.6	At2g21850	816721	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
78.8	99.9	115.2	At2g15860	816082	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
78.6	99.9	23.6	At3g25080	822099	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
78.0	99.9	46.3	At3g48080	823963	lipase class 3 family protein / disease resistance protein-related	F:lipase activity, triacylglycerol lipase activity, signal transducer activity;P:lipid metabolic process;C:cellular_component unknown;POB	O.I.	C.G.	H.G.
77.0	99.9	70.0	At3g13380	820538	BRL3 (BRI1-LIKE 3)	Similar to BRI, brassinosteroid receptor protein.	O.I.	C.G.	H.G.
76.7	99.9	103.2	At5g19875	832109	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;P	O.I.	C.G.	H.G.
76.2	99.9	327.8	At5g24660	832538	LSU2 (RESPONSE TO LOW SULFUR 2)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
75.7	99.9	339.5	At4g25810	828686	XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)	xyloglucan endotransglycosylase-related protein (XTR6)	O.I.	C.G.	H.G.
75.6	99.9	25.4	At1g44510	3767344	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
75.1	99.9	64.3	At5g39720	833968	AIG2L (AVIRULENCE INDUCED GENE 2 LIKE PROTEIN)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOFA	O.I.	C.G.	H.G.
74.7	99.9	336.6	At5g20150	832137	SPX1 (SPX DOMAIN GENE 1)	F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:nucleus;FMPOBA	O.I.	C.G.	H.G.
74.0	99.9	80.7	At2g02230	814754	AtPP2-B1 (Phloem protein 2-B1)	F:carbohydrate binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
73.8	99.9	53.2	At5g20320	832154	DCL4 (DICER-LIKE 4)	Encodes an RNase III-like enzyme that catalyzes processing of trans-acting small interfering RNA precursors in a distinct small RNA biogenesis pathway. The protein is also involved in the production of 21-nt primary siRNAs from both inverted-repeat constructs and endogenous sequences, as well as the RDR6-dependent 21-nt secondary siRNAs involved in long-range cell-to-cell signaling. It binds DRB4, a ds-RNA binding protein.	O.I.	C.G.	H.G.
73.7	99.9	111.0	At3g54150	824582	embryo-abundant protein-related	F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA	O.I.	C.G.	H.G.
72.1	99.9	35.5	At1g45150	841083	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOP	O.I.	C.G.	H.G.
71.4	99.9	73.5	At4g00750	825923	dehydration-responsive family protein	F:unknown;P:biological_process unknown;C:Golgi apparatus;PBO	O.I.	C.G.	H.G.
70.5	99.9	35.7	At2g37890	818365	mitochondrial substrate carrier family protein	F:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO	O.I.	C.G.	H.G.
70.3	99.9	85.4	At2g20142	2745551	transmembrane receptor	F:transmembrane receptor activity;P:signal transduction, innate immune response;C:intrinsic to membrane;P	O.I.	C.G.	H.G.
68.8	99.9	50.5	At1g33030	840198	O-methyltransferase family 2 protein	F:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOM	O.I.	C.G.	H.G.
68.5	99.9	121.7	At5g44240	834447	haloacid dehalogenase-like hydrolase family protein	F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, phospholipid transport, ATP biosynthetic process;C:integral to membrane, membrane;MBOFPAV	O.I.	C.G.	H.G.
66.9	99.8	40.4	At1g72280	843560	AERO1 (Arabidopsis endoplasmic reticulum oxidoreductins 1)	endoplasmic reticulum oxidoreductin	O.I.	C.G.	H.G.
66.6	99.8	45.5	At2g04650	815007	ADP-glucose pyrophosphorylase family protein	F:transferase activity, nucleotidyltransferase activity;P:biosynthetic process;C:cellular_component unknown;BOAMPF	O.I.	C.G.	H.G.
66.0	99.8	47.9	At4g14390	827084	ankyrin repeat family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBVA	O.I.	C.G.	H.G.
65.6	99.8	153.5	At2g02560	814786	CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED)	Arabidopsis thaliana homolog of human CAND1 (cullin-associated and neddylation-dissociated). Putative similarity to TBP-interacting protein TIP120. Ubiquitously expressed in plant tissues throughout development. T-DNA insertion mutant plants were completely sterile and resistant to sirtinol and auxin, but not to gibberellins or brassinolide. Displayed developmental phenotypes similar to those of axr1, namely, short petioles, downwardly curling leaves, shorter inflorescence. Required for SCF function and appears to modulate SCF complex cycling. Physically interacts with CUL1.	O.I.	C.G.	H.G.
65.5	99.8	122.6	At3g17420	821006	GPK1	serine/threonine protein kinase-like protein	O.I.	C.G.	H.G.
65.2	99.8	78.5	At4g02880	828150	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
65.0	99.8	73.6	At3g48020	823957	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
64.7	99.8	171.8	At1g69850	843321	ATNRT1:2 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1:2)	Encodes an inducible component of low-affinity nitrate uptake. mRNA found primarily in root hairs and the epidermis of roots.	O.I.	C.G.	H.G.
64.2	99.8	63.2	At4g31240	829251	-	F:unknown;P:cell redox homeostasis;C:cellular_component unknown;OMBP	O.I.	C.G.	H.G.
63.6	99.8	286.2	At2g44450	819052	BGLU15 (BETA GLUCOSIDASE 15)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plant-type cell wall;BOPMFA	O.I.	C.G.	H.G.
63.3	99.8	181.3	At2g28510	817399	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleolus;POMFB	O.I.	C.G.	H.G.
61.9	99.8	43.3	At5g61740	836296	ATATH14	member of ATH subfamily	O.I.	C.G.	H.G.
61.7	99.8	69.9	At1g70140	843350	ATFH8 (formin 8)	Encodes a group I formin. Binds to F-actin barbed ends. Has severing actin filaments activity. Binds profilin. Involved in the initiation and tip growth of root hairs through regulation of actin cytoskeleton.	O.I.	C.G.	H.G.
61.2	99.8	157.8	At5g43330	834351	malate dehydrogenase, cytosolic, putative	F:in 6 functions;P:cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process;C:plasma membrane;BOMPFA	O.I.	C.G.	H.G.
60.7	99.8	24.3	At3g61410	825313	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
60.6	99.8	126.3	At5g25440	832618	protein kinase family protein	F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:nucleus, cytoplasm;MPOBFVA	O.I.	C.G.	H.G.
60.3	99.8	115.0	At1g35230	840412	AGP5 (ARABINOGALACTAN-PROTEIN 5)	Encodes arabinogalactan-protein (AGP5).	O.I.	C.G.	H.G.
60.2	99.8	93.2	At4g03960	825706	tyrosine specific protein phosphatase family protein	F:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FPOBM	O.I.	C.G.	H.G.
60.1	99.8	160.7	At1g49050	841328	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:unknown;PMFO	O.I.	C.G.	H.G.
59.8	99.8	65.5	At5g42200	834225	zinc finger (C3HC4-type RING finger) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
59.2	99.8	95.5	At1g50510	841473	indigoidine synthase A family protein	F:unknown;P:biological_process unknown;C:plasma membrane;OBFMP	O.I.	C.G.	H.G.
59.2	99.8	59.7	At5g44170	834440	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOB	O.I.	C.G.	H.G.

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GSM ID	GSM142904
Assay name	WW002_ATH1_A1-willa-CON-REP2
GSE experiment	GSE6181: Assembly of the cell wall pectic matrix.

Microarray experiments to specifically-expressed genes

GSM ID GSM142904 Assay name WW002_ATH1_A1-willa-CON-REP2 GSE experiment GSE6181: Assembly of the cell wall pectic matrix.

GSM ID GSM142904

Assay name WW002_ATH1_A1-willa-CON-REP2

GSE experiment GSE6181: Assembly of the cell wall pectic matrix.