Microarray experiments to specifically-expressed genes

GSM ID GSM142895
Assay name MW001_ATH1_A3-Wheel-a14_repeat
GSE experiment GSE6179: An investigation into transcriptional changes in developing Arabidopsis leaf caused by novel signalling protein, SPH1.

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
66.099.861.1At4g04500825780protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
64.999.885.5At2g44240819032unknown proteinF:unknown;P:response to oxidative stress;C:endomembrane system;PFBO.I.C.G.H.G.
61.199.886.4At4g16860827395RPP4 (recognition of peronospora parasitica 4)Confers resistance to Peronospora parasitica. RPP4 is coordinately regulated by transcriptional activation and RNA silencing.O.I.C.G.H.G.
57.399.824.7At4g23310828430receptor-like protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:defense response;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
38.399.873.5At3g28540822484AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BOMFPAVO.I.C.G.H.G.
28.999.753.9At3g11010820272AtRLP34 (Receptor Like Protein 34)F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAVO.I.C.G.H.G.
28.299.7142.5At3g45860823729receptor-like protein kinase, putativeF:kinase activity;P:defense response;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
28.199.770.7At2g32680817828AtRLP23 (Receptor Like Protein 23)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
25.999.728.6At1g33720840263CYP76C6member of CYP76CO.I.C.G.H.G.
25.499.6112.0At4g16950827403RPP5 (RECOGNITION OF PERONOSPORA PARASITICA 5)Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.O.I.C.G.H.G.
25.099.6120.5At4g23140828413CRK6 (CYSTEINE-RICH RLK 6)Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)O.I.C.G.H.G.
24.999.612.6At3g57950824964unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
24.299.623.1At3g07520819940GLR1.4 (GLUTAMATE RECEPTOR 1.4)member of Putative ligand-gated ion channel subunit family. Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis.O.I.C.G.H.G.
23.199.619.8At5g43860834408ATCLH2Encodes a chlorophyllase, the first enzyme in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to chlorophyllide and phytol. AtCLH2 has a typical signal sequence for the chloroplast. Gene expression does not respond to methyljasmonate, a known promoter of senescence and chlorophyll degradation.O.I.C.G.H.G.
22.299.610.4At4g13810827015AtRLP47 (Receptor Like Protein 47)F:protein binding;P:signal transduction, defense response;C:unknown;PMOBFAVO.I.C.G.H.G.
21.699.615.2At4g16880827396disease resistance protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOMO.I.C.G.H.G.
21.499.636.5At4g16890827397SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1)Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4.O.I.C.G.H.G.
20.399.655.4At1g67970843125AT-HSFA8member of Heat Stress Transcription Factor (Hsf) familyO.I.C.G.H.G.
20.199.618.6At2g29090817457CYP707A2Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. This gene predominantly accumulates in dry seeds and is up-regulated immediately following imbibition. CYP707A2 appears to play a major role in the rapid decrease in ABA levels during early seed imbibition.O.I.C.G.H.G.
20.199.618.1At1g21240838719WAK3 (wall associated kinase 3)encodes a wall-associated kinaseO.I.C.G.H.G.
19.599.6102.0At1g35710840475leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
19.299.639.5At4g23260828425ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:response to abscisic acid stimulus;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
19.199.6202.0At5g10380830902RING1Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators.O.I.C.G.H.G.
18.699.543.5At5g60900836211RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1)Encodes a receptor-like protein kinase.O.I.C.G.H.G.
17.499.527.5At3g23110821886AtRLP37 (Receptor Like Protein 37)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
17.499.527.4At1g66980843016protein kinase family protein / glycerophosphoryl diester phosphodiesterase family proteinF:kinase activity, glycerophosphodiester phosphodiesterase activity;P:protein amino acid phosphorylation, glycerol metabolic process, lipid metabolic process;C:unknown;MPOBFVAO.I.C.G.H.G.
16.799.530.2At3g25010822092AtRLP41 (Receptor Like Protein 41)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
15.999.526.2At2g04460814986transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
15.799.511.2At3g26320822236CYP71B36putative cytochrome P450O.I.C.G.H.G.
15.699.548.1At5g35490833513unknown proteinEncodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine.O.I.C.G.H.G.
15.099.425.3At2g29120817460ATGLR2.7member of Putative ligand-gated ion channel subunit familyO.I.C.G.H.G.
14.899.434.1At5g60800836201heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:unknown;POMFBVAO.I.C.G.H.G.
14.799.448.1At4g17370827449oxidoreductase family proteinF:electron carrier activity, oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOFMAPO.I.C.G.H.G.
14.299.414.4At2g150403768475-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
13.899.483.9At1g76960844031unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
13.599.4223.6At5g10760830943aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFOO.I.C.G.H.G.
13.299.4126.2At2g18660816381EXLB3 (EXPANSIN-LIKE B3 PRECURSOR)Encodes PNP-A (Plant Natriuretic Peptide A). PNPs are a class of systemically mobile molecules distantly related to expansins; their biological role has remained elusive. PNP-A contains a signal peptide domain and is secreted into the extracellular space. Co-expression analyses using microarray data suggest that PNP-A may function as a component of plant defence response and SAR in particular, and could be classified as a newly identified PR protein.O.I.C.G.H.G.
13.199.442.6At4g16990827407RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3)F:transmembrane receptor activity, ATP binding;P:defense response to fungus, incompatible interaction, jasmonic acid and ethylene-dependent systemic resistance, callose deposition during defense response, defense response;C:intrinsic to membrane;PMBO.I.C.G.H.G.
13.099.49.4At1g76530843986auxin efflux carrier family proteinF:auxin:hydrogen symporter activity;P:auxin polar transport;C:endomembrane system, integral to membrane;PFOO.I.C.G.H.G.
12.799.338.0At4g23150828414protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
12.799.337.9At1g33960840293AIG1 (AVRRPT2-INDUCED GENE 1)Identified as a gene that is induced by avirulence gene avrRpt2 and RPS2 after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2O.I.C.G.H.G.
12.799.319.1At3g13100820498ATMRP7member of MRP subfamilyO.I.C.G.H.G.
12.699.385.5At2g04450814985ATNUDT6 (Arabidopsis thaliana Nudix hydrolase homolog 6)F:ADP-ribose diphosphatase activity, hydrolase activity, NAD or NADH binding;P:response to other organism;C:cytosol;OBMPAFVO.I.C.G.H.G.
12.699.366.1At4g09760826564choline kinase, putativeencodes a choline synthase whose gene expression is induced by high salt and mannitol.O.I.C.G.H.G.
12.499.322.9At3g44480823573RPP1 (recognition of peronospora parasitica 1)Encodes a TIR-NB-LRR R-protein RPP1 that confers resistance to Peronospora parasitica (downy mildew).O.I.C.G.H.G.
12.499.37.7At3g24900822088AtRLP39 (Receptor Like Protein 39)F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
12.399.361.8At2g17040816209anac036 (Arabidopsis NAC domain containing protein 36)F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;PO.I.C.G.H.G.
12.399.38.0At5g46520834695ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptorF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFVAO.I.C.G.H.G.
12.299.379.9At4g12310826840CYP706A5member of CYP706AO.I.C.G.H.G.
11.999.334.3At4g16800827386enoyl-CoA hydratase, putativeF:enoyl-CoA hydratase activity, catalytic activity;P:fatty acid metabolic process, metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
11.799.322.6At4g168703770172transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
11.599.313.8At5g47130834759Bax inhibitor-1 family / BI-1 familyF:unknown;P:negative regulation of apoptosis, anti-apoptosis;C:integral to membrane;BMPOFVO.I.C.G.H.G.
11.499.346.1At4g28390828955AAC3 (ADP/ATP CARRIER 3)Encodes a mitochondrial ADP/ATP carrier protein. Shown in heterologous systems to be located in the plasma membrane. Has comparable affinity for ADP and ATP (in E.coli).O.I.C.G.H.G.
11.499.332.7At2g29320817481tropinone reductase, putative / tropine dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
11.399.392.6At4g17330827445ATG2484-1gene of unknown function expressed in seedlings, flower buds and stemsO.I.C.G.H.G.
11.399.371.0At4g17110--O.I.C.G.H.G.
11.299.29.2At1g66960843014lupeol synthase, putative / 2,3-oxidosqualene-triterpenoid cyclase, putativeF:lupeol synthase activity;P:pentacyclic triterpenoid biosynthetic process;C:unknown;BPOFMO.I.C.G.H.G.
11.099.237.6At1g63880842692disease resistance protein (TIR-NBS-LRR class), putativeEncodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans.O.I.C.G.H.G.
10.899.237.6At3g44630823589disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation, defense response;C:intrinsic to membrane;PMBOFAVO.I.C.G.H.G.
10.799.220.3At1g29720839850protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
10.699.252.7At1g21270838723WAK2cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase.O.I.C.G.H.G.
10.599.225.2At3g05650819732AtRLP32 (Receptor Like Protein 32)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
10.499.254.7At5g39670833963calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOBO.I.C.G.H.G.
10.499.225.2At5g64000836521SAL23'(2'),5'-bisphosphate nucleotidaseO.I.C.G.H.G.
10.499.213.5At5g38210833803serine/threonine protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
10.499.29.7At3g25020822093AtRLP42 (Receptor Like Protein 42)F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
10.399.268.0At2g32160817775-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOPO.I.C.G.H.G.
10.399.211.5At5g36930833662disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAVO.I.C.G.H.G.
10.399.23.3At4g05030825845heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:mitochondrion;PO.I.C.G.H.G.
10.299.216.1At1g62850842585--O.I.C.G.H.G.
10.199.238.8At4g00700828031C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.C.G.H.G.
10.099.258.7At5g45800834620MEE62 (maternal effect embryo arrest 62)F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:embryonic development ending in seed dormancy, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;PMOBFVAO.I.C.G.H.G.
10.099.212.7At5g43740834394disease resistance protein (CC-NBS-LRR class), putativeF:protein binding, ATP binding;P:defense response, apoptosis;C:endomembrane system;PMBOFAO.I.C.G.H.G.
9.899.110.4At2g32290817789BAM6 (BETA-AMYLASE 6)F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBOO.I.C.G.H.G.
9.699.113.6At1g52770841710phototropic-responsive NPH3 family proteinF:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;PO.I.C.G.H.G.
9.299.1104.9At5g63780836498SHA1 (shoot apical meristem arrest 1)Encodes SHA1 (shoot apical meristem arrest), a putative E3 ligase (a RING finger protein) required for post-embryonic SAM maintenance. The mutant sha1-1 shows a primary SAM-deficient phenotype at the adult stage.O.I.C.G.H.G.
9.299.148.3At1g215253766777-pseudogene of unknown proteinO.I.C.G.H.G.
9.299.132.7At4g25000828603AMY1 (ALPHA-AMYLASE-LIKE)Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830).O.I.C.G.H.G.
9.199.142.5At3g47480823902calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOBO.I.C.G.H.G.
9.099.129.0At3g46530823806RPP13 (RECOGNITION OF PERONOSPORA PARASITICA 13)Confers resistance to the biotrophic oomycete, Peronospora parasitica. Encodes an NBS-LRR type R protein with a putative amino-terminal leucine zipper. Fungal protein ATR13 induces RPP13 gene expression and disease resistance.O.I.C.G.H.G.
8.799.022.7At5g59670836088leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
8.799.014.0At3g57460824913catalytic/ metal ion binding / metalloendopeptidase/ zinc ion bindingF:metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding;P:proteolysis;C:cellular_component unknown;MBFPOO.I.C.G.H.G.
8.699.042.6At4g38860830041auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.



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