CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM142885

Assay name CW001_ATH1_A1.4-WestC-kub

GSE experiment GSE6178: Mechanisms of DNA double strand break repair in Arabidopsis non-homologous end joining mutants

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
364.4 100.0 28.9 At4g25330 828636 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
86.5 99.9 69.7 At4g37490 829904 CYCB1 Cyclin-dependent protein kinase CYCB1;1. Functions as an effector of growth control at G2/M. Regulated by TCP20. O.I. C.G. H.G.
84.1 99.9 55.9 At4g21070 827854 ATBRCA1 Encodes AtBRCA1, an ortholog of the human breast cancer susceptibility gene 1. Contains one N-terminal RING finger, two C-terminal BRCT and the p300/CBP interacting domain. Strongly induced by gamma rays, consistent with a putative role in DNA repair and in cell cycle control. O.I. C.G. H.G.
80.4 99.9 80.6 At4g02390 828049 APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE) Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification . O.I. C.G. H.G.
78.4 99.9 30.6 At5g64060 836527 anac103 (Arabidopsis NAC domain containing protein 103) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
75.3 99.9 85.6 At5g48720 834930 XRI1 (X-RAY INDUCED TRANSCRIPT 1) Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray. Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation. O.I. C.G. H.G.
72.3 99.9 230.0 At3g07800 819971 thymidine kinase, putative F:thymidine kinase activity, ATP binding;P:pyrimidine deoxyribonucleoside interconversion, anaerobic respiration;C:cellular_component unknown;BOVMPAF O.I. C.G. H.G.
70.9 99.9 39.9 At5g20850 832208 ATRAD51 Encodes a homolog of yeast RAD51. Its mRNA is most abundant in early flower buds and is expressed at high levels in exponentially growing cells in suspension cultures and is induced in response to gamma radiation. O.I. C.G. H.G.
69.7 99.9 111.5 At4g17470 827458 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO O.I. C.G. H.G.
62.0 99.8 60.1 At4g22960 828395 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB O.I. C.G. H.G.
61.7 99.8 61.9 At3g48580 824018 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PBFOA O.I. C.G. H.G.
55.6 99.8 12.3 At1g53080 841742 legume lectin family protein F:carbohydrate binding, sugar binding;P:biological_process unknown;C:plant-type cell wall;PBO O.I. C.G. H.G.
53.0 99.8 116.2 At1g21525 3766777 - pseudogene of unknown protein O.I. C.G. H.G.
51.9 99.8 35.0 At2g18600 816375 RUB1-conjugating enzyme, putative F:ubiquitin-protein ligase activity, small conjugating protein ligase activity, acid-amino acid ligase activity, ATP binding;P:regulation of protein metabolic process, protein modification process, post-translational protein modification;C:cellular_component unknown;MFOPV O.I. C.G. H.G.
49.4 99.8 29.5 At4g31970 829327 CYP82C2 member of CYP82C O.I. C.G. H.G.
43.2 99.8 62.6 At5g18840 832002 sugar transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOA O.I. C.G. H.G.
36.8 99.7 63.6 At2g12290 815700 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
32.5 99.7 96.1 At2g23150 816847 NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3) Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp4, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination. O.I. C.G. H.G.
31.6 99.7 11.9 At1g13330 837893 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFAPV O.I. C.G. H.G.
29.3 99.7 25.4 At2g28850 817434 CYP710A3 (cytochrome P450, family 710, subfamily A, polypeptide 3) member of CYP710A O.I. C.G. H.G.
28.2 99.7 108.0 At1g17020 838272 SRG1 (SENESCENCE-RELATED GENE 1) Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene. O.I. C.G. H.G.
27.0 99.7 49.3 At2g35820 818155 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO O.I. C.G. H.G.
26.9 99.7 121.5 At3g04070 819562 anac047 (Arabidopsis NAC domain containing protein 47) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
26.9 99.7 115.9 At1g14720 838037 XTR2 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2) member of Glycoside Hydrolase Family 16 O.I. C.G. H.G.
26.7 99.7 54.9 At1g07500 837264 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
26.6 99.7 22.8 At2g45460 819154 forkhead-associated domain-containing protein / FHA domain-containing protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:chloroplast;MOBFPAV O.I. C.G. H.G.
26.6 99.7 16.0 At5g03780 831726 TRFL10 (TRF-LIKE 10) Encodes a protein whose sequence is similar to human telomere proteins. This belongs to TRFL family 2, which do not show DNA binding in vitro. O.I. C.G. H.G.
25.5 99.7 52.9 At5g60250 836147 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;MFPOB O.I. C.G. H.G.
25.1 99.6 78.0 At2g30360 817586 SIP4 (SOS3-INTERACTING PROTEIN 4) Encodes a SOS2-like protein kinase that is a member of the CBL-interacting protein kinase family.Loss of function mutants show a decrease in sensitivity to high pH.Phosphorylates AHA2, a plasma membrane H+ ATPase.This phosphorylation appears to regulate the activity of the proton transporter. O.I. C.G. H.G.
23.1 99.6 52.8 At5g47050 834751 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVFBA O.I. C.G. H.G.
22.8 99.6 46.3 At1g72800 843611 nuM1-related F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PBFMOAV O.I. C.G. H.G.
22.5 99.6 15.8 At4g19130 827651 DNA binding / nucleic acid binding / zinc ion binding F:DNA binding, zinc ion binding, nucleic acid binding;P:DNA replication;C:nucleus;MPOFA O.I. C.G. H.G.
22.4 99.6 25.6 At1g17460 838319 TRFL3 (TRF-LIKE 3) Arabidopsis thaliana myb family transcription factor (At1g17460) O.I. C.G. H.G.
22.2 99.6 17.4 At3g57380 824905 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMOBF O.I. C.G. H.G.
21.8 99.6 31.1 At5g24280 832495 - F:unknown;P:unknown;C:unknown;PMOBF O.I. C.G. H.G.
21.8 99.6 18.0 At5g15420 831394 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OP O.I. C.G. H.G.
21.4 99.6 17.6 At5g40840 834084 SYN2 Cohesion family protein SYN2 (SYN2). O.I. C.G. H.G.
20.7 99.6 89.8 At2g29350 817484 SAG13 senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenase O.I. C.G. H.G.
20.7 99.6 70.3 At4g01430 826685 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;PBOAMF O.I. C.G. H.G.
20.3 99.6 41.1 At3g04000 819555 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
20.3 99.6 33.6 At1g71140 843454 MATE efflux family protein F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:plasma membrane, membrane;BOPFMA O.I. C.G. H.G.
20.3 99.6 27.5 At1g20350 838623 ATTIM17-1 mitochondrial inner membrane translocase O.I. C.G. H.G.
20.2 99.6 37.0 At5g19100 832030 extracellular dermal glycoprotein-related / EDGP-related F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;P O.I. C.G. H.G.
19.8 99.6 67.9 At5g17760 831644 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:unknown;C:plasma membrane;BOMFPAV O.I. C.G. H.G.
19.8 99.6 36.7 At2g25000 817039 WRKY60 Pathogen-induced transcription factor. Forms protein complexes with itself and with WRKY40. Coexpression with WRKY18 or WRKY40 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. O.I. C.G. H.G.
19.4 99.6 107.3 At3g47540 823908 chitinase, putative F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBMOF O.I. C.G. H.G.
18.8 99.5 17.1 At1g52700 841703 phospholipase/carboxylesterase family protein F:hydrolase activity, carboxylesterase activity;P:biological_process unknown;C:unknown;BOMFPA O.I. C.G. H.G.
18.5 99.5 22.1 At5g66130 836745 ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) Encodes a homolog to yeast RAD17. Involved in the regulation of DNA damage repair and homologous recombination. Mutant has increased sensitivity to MMS and increased telomere lengths. O.I. C.G. H.G.
18.3 99.5 72.6 At5g38020 833781 S-adenosyl-L-methionine:carboxyl methyltransferase family protein encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) O.I. C.G. H.G.
17.5 99.5 123.8 At2g37760 818353 aldo/keto reductase family protein F:oxidoreductase activity;P:response to cadmium ion;C:unknown;BOMFPA O.I. C.G. H.G.
17.1 99.5 55.2 At1g17360 838308 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
16.8 99.5 14.7 At1g30160 839896 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
16.7 99.5 101.0 At1g69880 843324 ATH8 (thioredoxin H-type 8) F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAV O.I. C.G. H.G.
16.4 99.5 30.3 At2g47680 819381 zinc finger (CCCH type) helicase family protein F:helicase activity, zinc ion binding, nucleic acid binding, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:chloroplast;MBOFPV O.I. C.G. H.G.
16.4 99.5 26.1 At1g03440 839504 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA O.I. C.G. H.G.
16.3 99.5 267.5 At3g27060 822324 TSO2 (TSO meaning 'ugly' in Chinese) Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development. O.I. C.G. H.G.
16.0 99.5 17.8 At5g11460 831017 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
15.9 99.5 26.5 At5g58575 835971 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
15.6 99.5 102.5 At1g43910 840990 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
15.6 99.5 43.7 At2g16790 816180 shikimate kinase family protein F:shikimate kinase activity, kinase activity, ATP binding;P:carbohydrate metabolic process;C:cellular_component unknown;BOFMPA O.I. C.G. H.G.
15.5 99.5 207.0 At2g43510 818952 ATTI1 Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory. O.I. C.G. H.G.
15.5 99.5 9.4 At4g05370 825885 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
15.4 99.5 13.9 At1g63540 842659 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOBPVA O.I. C.G. H.G.
15.2 99.4 313.9 At4g11650 826770 ATOSM34 (osmotin 34) osmotin-like protein O.I. C.G. H.G.
15.2 99.4 56.2 At1g02300 839576 cathepsin B-like cysteine protease, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis, regulation of catalytic activity;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
15.2 99.4 26.4 At3g45730 823715 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
15.1 99.4 54.3 At2g15120 3768033 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
14.5 99.4 47.9 At1g08940 837415 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;BFOPAM O.I. C.G. H.G.
14.5 99.4 9.1 At3g61090 825281 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.3 99.4 43.8 At3g22550 821826 senescence-associated protein-related F:molecular_function unknown;P:response to salt stress;C:unknown;P O.I. C.G. H.G.
14.3 99.4 25.2 At5g06330 830521 hairpin-responsive protein, putative (HIN1) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.2 99.4 17.3 At4g32810 829417 CCD8 (CAROTENOID CLEAVAGE DIOXYGENASE 8) Encodes a protein with similarity to carotenoid cleaving deoxygenases, the enzymes that cleave beta-carotene. Involved in the production of a graft transmissable signal to suppress axillary branching. Protein is localized to chloroplast stroma and expressed primarily in root tip. Mutants in the gene exhibit increased shoot branching, and light-dependent defects in hook opening and hypocotyl/root elongation. Only upregulated by auxin in the root and hypocotyl, and this is not required for the inhibition of shoot branching. O.I. C.G. H.G.
14.1 99.4 230.5 At5g49480 835008 ATCP1 (Ca2+-binding protein 1) AtCP1 encodes a novel Ca2+-binding protein, which shares sequence similarities with calmodulins. The expression of AtCP1 is induced by NaCl. O.I. C.G. H.G.
14.0 99.4 47.9 At3g60980 825270 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:response to oxidative stress;C:unknown;PO O.I. C.G. H.G.
13.9 99.4 86.4 At1g66690 842987 S-adenosyl-L-methionine:carboxyl methyltransferase family protein F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF O.I. C.G. H.G.
13.7 99.4 215.1 At4g16260 827320 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:cell wall, plasma membrane;PO O.I. C.G. H.G.
13.7 99.4 64.3 At2g41230 818722 unknown protein F:unknown;P:biological_process unknown;C:unknown;PM O.I. C.G. H.G.
13.5 99.4 102.9 At3g51860 824349 CAX3 (CATION EXCHANGER 3) F:cation:cation antiporter activity, calcium:cation antiporter activity, calcium:hydrogen antiporter activity;P:in 9 processes;C:plant-type vacuole membrane, vacuolar membrane, vacuole;BFOPAM O.I. C.G. H.G.
13.5 99.4 52.6 At3g29810 822697 COBL2 (COBRA-LIKE PROTEIN 2 PRECURSOR) F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;P O.I. C.G. H.G.
13.4 99.4 62.5 At3g13235 820522 ubiquitin family protein F:aspartic-type endopeptidase activity;P:response to cadmium ion;C:cytosol, nucleus;MPOFVB O.I. C.G. H.G.
13.3 99.4 110.3 At4g37520 829907 peroxidase 50 (PER50) (P50) (PRXR2) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cytoplasm;PFOM O.I. C.G. H.G.
13.2 99.4 44.4 At5g03230 831900 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
13.1 99.4 102.1 At5g66140 836746 PAD2 (PROTEASOME ALPHA SUBUNIT D 2) Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation. O.I. C.G. H.G.
13.1 99.4 31.6 At3g08990 820051 yippee family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
12.8 99.3 11.1 At5g44390 834465 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFOPMA O.I. C.G. H.G.
12.7 99.3 78.3 At5g42850 834296 - F:unknown;P:cell redox homeostasis;C:cellular_component unknown;MFPO O.I. C.G. H.G.
12.5 99.3 34.0 At5g41400 834142 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
12.5 99.3 16.8 At4g22250 828320 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV O.I. C.G. H.G.
12.3 99.3 32.9 At1g61667 842463 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
12.3 99.3 30.7 At4g16563 827356 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;PMFO O.I. C.G. H.G.
12.2 99.3 46.4 At4g30460 829169 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA O.I. C.G. H.G.
12.0 99.3 26.6 At1g73040 843635 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO O.I. C.G. H.G.
11.9 99.3 10.0 At3g51970 824360 AtSAT1 (Arabidopsis thaliana sterol O-acyltransferase 1) F:acyltransferase activity;P:biological_process unknown;C:endomembrane system;BPOF O.I. C.G. H.G.
11.8 99.3 32.9 At1g22510 838857 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:plasma membrane;MOPFBV O.I. C.G. H.G.
11.8 99.3 29.0 At5g42200 834225 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
11.7 99.3 65.7 At5g17860 831654 CAX7 (calcium exchanger 7) F:cation:cation antiporter activity, calcium:sodium antiporter activity;P:cation transport;C:endomembrane system, integral to membrane;MBOFPA O.I. C.G. H.G.
11.6 99.3 56.2 At2g21640 816702 - Encodes a protein of unknown function that is a marker for oxidative stress response. O.I. C.G. H.G.
11.5 99.3 38.6 At2g30270 817577 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
11.4 99.3 76.4 At4g22610 828357 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
11.3 99.3 16.1 At5g60270 836149 lectin protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
364.4	100.0	28.9	At4g25330	828636	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
86.5	99.9	69.7	At4g37490	829904	CYCB1	Cyclin-dependent protein kinase CYCB1;1. Functions as an effector of growth control at G2/M. Regulated by TCP20.	O.I.	C.G.	H.G.
84.1	99.9	55.9	At4g21070	827854	ATBRCA1	Encodes AtBRCA1, an ortholog of the human breast cancer susceptibility gene 1. Contains one N-terminal RING finger, two C-terminal BRCT and the p300/CBP interacting domain. Strongly induced by gamma rays, consistent with a putative role in DNA repair and in cell cycle control.	O.I.	C.G.	H.G.
80.4	99.9	80.6	At4g02390	828049	APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE)	Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification .	O.I.	C.G.	H.G.
78.4	99.9	30.6	At5g64060	836527	anac103 (Arabidopsis NAC domain containing protein 103)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
75.3	99.9	85.6	At5g48720	834930	XRI1 (X-RAY INDUCED TRANSCRIPT 1)	Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray. Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation.	O.I.	C.G.	H.G.
72.3	99.9	230.0	At3g07800	819971	thymidine kinase, putative	F:thymidine kinase activity, ATP binding;P:pyrimidine deoxyribonucleoside interconversion, anaerobic respiration;C:cellular_component unknown;BOVMPAF	O.I.	C.G.	H.G.
70.9	99.9	39.9	At5g20850	832208	ATRAD51	Encodes a homolog of yeast RAD51. Its mRNA is most abundant in early flower buds and is expressed at high levels in exponentially growing cells in suspension cultures and is induced in response to gamma radiation.	O.I.	C.G.	H.G.
69.7	99.9	111.5	At4g17470	827458	palmitoyl protein thioesterase family protein	F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
62.0	99.8	60.1	At4g22960	828395	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB	O.I.	C.G.	H.G.
61.7	99.8	61.9	At3g48580	824018	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PBFOA	O.I.	C.G.	H.G.
55.6	99.8	12.3	At1g53080	841742	legume lectin family protein	F:carbohydrate binding, sugar binding;P:biological_process unknown;C:plant-type cell wall;PBO	O.I.	C.G.	H.G.
53.0	99.8	116.2	At1g21525	3766777	-	pseudogene of unknown protein	O.I.	C.G.	H.G.
51.9	99.8	35.0	At2g18600	816375	RUB1-conjugating enzyme, putative	F:ubiquitin-protein ligase activity, small conjugating protein ligase activity, acid-amino acid ligase activity, ATP binding;P:regulation of protein metabolic process, protein modification process, post-translational protein modification;C:cellular_component unknown;MFOPV	O.I.	C.G.	H.G.
49.4	99.8	29.5	At4g31970	829327	CYP82C2	member of CYP82C	O.I.	C.G.	H.G.
43.2	99.8	62.6	At5g18840	832002	sugar transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOA	O.I.	C.G.	H.G.
36.8	99.7	63.6	At2g12290	815700	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
32.5	99.7	96.1	At2g23150	816847	NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)	Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp4, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination.	O.I.	C.G.	H.G.
31.6	99.7	11.9	At1g13330	837893	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFAPV	O.I.	C.G.	H.G.
29.3	99.7	25.4	At2g28850	817434	CYP710A3 (cytochrome P450, family 710, subfamily A, polypeptide 3)	member of CYP710A	O.I.	C.G.	H.G.
28.2	99.7	108.0	At1g17020	838272	SRG1 (SENESCENCE-RELATED GENE 1)	Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.	O.I.	C.G.	H.G.
27.0	99.7	49.3	At2g35820	818155	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
26.9	99.7	121.5	At3g04070	819562	anac047 (Arabidopsis NAC domain containing protein 47)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
26.9	99.7	115.9	At1g14720	838037	XTR2 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2)	member of Glycoside Hydrolase Family 16	O.I.	C.G.	H.G.
26.7	99.7	54.9	At1g07500	837264	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
26.6	99.7	22.8	At2g45460	819154	forkhead-associated domain-containing protein / FHA domain-containing protein	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:chloroplast;MOBFPAV	O.I.	C.G.	H.G.
26.6	99.7	16.0	At5g03780	831726	TRFL10 (TRF-LIKE 10)	Encodes a protein whose sequence is similar to human telomere proteins. This belongs to TRFL family 2, which do not show DNA binding in vitro.	O.I.	C.G.	H.G.
25.5	99.7	52.9	At5g60250	836147	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;MFPOB	O.I.	C.G.	H.G.
25.1	99.6	78.0	At2g30360	817586	SIP4 (SOS3-INTERACTING PROTEIN 4)	Encodes a SOS2-like protein kinase that is a member of the CBL-interacting protein kinase family.Loss of function mutants show a decrease in sensitivity to high pH.Phosphorylates AHA2, a plasma membrane H+ ATPase.This phosphorylation appears to regulate the activity of the proton transporter.	O.I.	C.G.	H.G.
23.1	99.6	52.8	At5g47050	834751	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVFBA	O.I.	C.G.	H.G.
22.8	99.6	46.3	At1g72800	843611	nuM1-related	F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PBFMOAV	O.I.	C.G.	H.G.
22.5	99.6	15.8	At4g19130	827651	DNA binding / nucleic acid binding / zinc ion binding	F:DNA binding, zinc ion binding, nucleic acid binding;P:DNA replication;C:nucleus;MPOFA	O.I.	C.G.	H.G.
22.4	99.6	25.6	At1g17460	838319	TRFL3 (TRF-LIKE 3)	Arabidopsis thaliana myb family transcription factor (At1g17460)	O.I.	C.G.	H.G.
22.2	99.6	17.4	At3g57380	824905	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMOBF	O.I.	C.G.	H.G.
21.8	99.6	31.1	At5g24280	832495	-	F:unknown;P:unknown;C:unknown;PMOBF	O.I.	C.G.	H.G.
21.8	99.6	18.0	At5g15420	831394	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OP	O.I.	C.G.	H.G.
21.4	99.6	17.6	At5g40840	834084	SYN2	Cohesion family protein SYN2 (SYN2).	O.I.	C.G.	H.G.
20.7	99.6	89.8	At2g29350	817484	SAG13	senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenase	O.I.	C.G.	H.G.
20.7	99.6	70.3	At4g01430	826685	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;PBOAMF	O.I.	C.G.	H.G.
20.3	99.6	41.1	At3g04000	819555	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
20.3	99.6	33.6	At1g71140	843454	MATE efflux family protein	F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:plasma membrane, membrane;BOPFMA	O.I.	C.G.	H.G.
20.3	99.6	27.5	At1g20350	838623	ATTIM17-1	mitochondrial inner membrane translocase	O.I.	C.G.	H.G.
20.2	99.6	37.0	At5g19100	832030	extracellular dermal glycoprotein-related / EDGP-related	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;P	O.I.	C.G.	H.G.
19.8	99.6	67.9	At5g17760	831644	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:unknown;C:plasma membrane;BOMFPAV	O.I.	C.G.	H.G.
19.8	99.6	36.7	At2g25000	817039	WRKY60	Pathogen-induced transcription factor. Forms protein complexes with itself and with WRKY40. Coexpression with WRKY18 or WRKY40 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.	O.I.	C.G.	H.G.
19.4	99.6	107.3	At3g47540	823908	chitinase, putative	F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBMOF	O.I.	C.G.	H.G.
18.8	99.5	17.1	At1g52700	841703	phospholipase/carboxylesterase family protein	F:hydrolase activity, carboxylesterase activity;P:biological_process unknown;C:unknown;BOMFPA	O.I.	C.G.	H.G.
18.5	99.5	22.1	At5g66130	836745	ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)	Encodes a homolog to yeast RAD17. Involved in the regulation of DNA damage repair and homologous recombination. Mutant has increased sensitivity to MMS and increased telomere lengths.	O.I.	C.G.	H.G.
18.3	99.5	72.6	At5g38020	833781	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)	O.I.	C.G.	H.G.
17.5	99.5	123.8	At2g37760	818353	aldo/keto reductase family protein	F:oxidoreductase activity;P:response to cadmium ion;C:unknown;BOMFPA	O.I.	C.G.	H.G.
17.1	99.5	55.2	At1g17360	838308	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
16.8	99.5	14.7	At1g30160	839896	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.7	99.5	101.0	At1g69880	843324	ATH8 (thioredoxin H-type 8)	F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAV	O.I.	C.G.	H.G.
16.4	99.5	30.3	At2g47680	819381	zinc finger (CCCH type) helicase family protein	F:helicase activity, zinc ion binding, nucleic acid binding, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:chloroplast;MBOFPV	O.I.	C.G.	H.G.
16.4	99.5	26.1	At1g03440	839504	leucine-rich repeat family protein	F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA	O.I.	C.G.	H.G.
16.3	99.5	267.5	At3g27060	822324	TSO2 (TSO meaning 'ugly' in Chinese)	Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development.	O.I.	C.G.	H.G.
16.0	99.5	17.8	At5g11460	831017	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
15.9	99.5	26.5	At5g58575	835971	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
15.6	99.5	102.5	At1g43910	840990	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
15.6	99.5	43.7	At2g16790	816180	shikimate kinase family protein	F:shikimate kinase activity, kinase activity, ATP binding;P:carbohydrate metabolic process;C:cellular_component unknown;BOFMPA	O.I.	C.G.	H.G.
15.5	99.5	207.0	At2g43510	818952	ATTI1	Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory.	O.I.	C.G.	H.G.
15.5	99.5	9.4	At4g05370	825885	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
15.4	99.5	13.9	At1g63540	842659	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOBPVA	O.I.	C.G.	H.G.
15.2	99.4	313.9	At4g11650	826770	ATOSM34 (osmotin 34)	osmotin-like protein	O.I.	C.G.	H.G.
15.2	99.4	56.2	At1g02300	839576	cathepsin B-like cysteine protease, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis, regulation of catalytic activity;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
15.2	99.4	26.4	At3g45730	823715	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
15.1	99.4	54.3	At2g15120	3768033	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
14.5	99.4	47.9	At1g08940	837415	phosphoglycerate/bisphosphoglycerate mutase family protein	F:catalytic activity;P:metabolic process;C:cellular_component unknown;BFOPAM	O.I.	C.G.	H.G.
14.5	99.4	9.1	At3g61090	825281	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.3	99.4	43.8	At3g22550	821826	senescence-associated protein-related	F:molecular_function unknown;P:response to salt stress;C:unknown;P	O.I.	C.G.	H.G.
14.3	99.4	25.2	At5g06330	830521	hairpin-responsive protein, putative (HIN1)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.2	99.4	17.3	At4g32810	829417	CCD8 (CAROTENOID CLEAVAGE DIOXYGENASE 8)	Encodes a protein with similarity to carotenoid cleaving deoxygenases, the enzymes that cleave beta-carotene. Involved in the production of a graft transmissable signal to suppress axillary branching. Protein is localized to chloroplast stroma and expressed primarily in root tip. Mutants in the gene exhibit increased shoot branching, and light-dependent defects in hook opening and hypocotyl/root elongation. Only upregulated by auxin in the root and hypocotyl, and this is not required for the inhibition of shoot branching.	O.I.	C.G.	H.G.
14.1	99.4	230.5	At5g49480	835008	ATCP1 (Ca2+-binding protein 1)	AtCP1 encodes a novel Ca2+-binding protein, which shares sequence similarities with calmodulins. The expression of AtCP1 is induced by NaCl.	O.I.	C.G.	H.G.
14.0	99.4	47.9	At3g60980	825270	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:response to oxidative stress;C:unknown;PO	O.I.	C.G.	H.G.
13.9	99.4	86.4	At1g66690	842987	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF	O.I.	C.G.	H.G.
13.7	99.4	215.1	At4g16260	827320	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:cell wall, plasma membrane;PO	O.I.	C.G.	H.G.
13.7	99.4	64.3	At2g41230	818722	unknown protein	F:unknown;P:biological_process unknown;C:unknown;PM	O.I.	C.G.	H.G.
13.5	99.4	102.9	At3g51860	824349	CAX3 (CATION EXCHANGER 3)	F:cation:cation antiporter activity, calcium:cation antiporter activity, calcium:hydrogen antiporter activity;P:in 9 processes;C:plant-type vacuole membrane, vacuolar membrane, vacuole;BFOPAM	O.I.	C.G.	H.G.
13.5	99.4	52.6	At3g29810	822697	COBL2 (COBRA-LIKE PROTEIN 2 PRECURSOR)	F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;P	O.I.	C.G.	H.G.
13.4	99.4	62.5	At3g13235	820522	ubiquitin family protein	F:aspartic-type endopeptidase activity;P:response to cadmium ion;C:cytosol, nucleus;MPOFVB	O.I.	C.G.	H.G.
13.3	99.4	110.3	At4g37520	829907	peroxidase 50 (PER50) (P50) (PRXR2)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cytoplasm;PFOM	O.I.	C.G.	H.G.
13.2	99.4	44.4	At5g03230	831900	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
13.1	99.4	102.1	At5g66140	836746	PAD2 (PROTEASOME ALPHA SUBUNIT D 2)	Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation.	O.I.	C.G.	H.G.
13.1	99.4	31.6	At3g08990	820051	yippee family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
12.8	99.3	11.1	At5g44390	834465	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFOPMA	O.I.	C.G.	H.G.
12.7	99.3	78.3	At5g42850	834296	-	F:unknown;P:cell redox homeostasis;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
12.5	99.3	34.0	At5g41400	834142	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
12.5	99.3	16.8	At4g22250	828320	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV	O.I.	C.G.	H.G.
12.3	99.3	32.9	At1g61667	842463	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
12.3	99.3	30.7	At4g16563	827356	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;PMFO	O.I.	C.G.	H.G.
12.2	99.3	46.4	At4g30460	829169	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA	O.I.	C.G.	H.G.
12.0	99.3	26.6	At1g73040	843635	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO	O.I.	C.G.	H.G.
11.9	99.3	10.0	At3g51970	824360	AtSAT1 (Arabidopsis thaliana sterol O-acyltransferase 1)	F:acyltransferase activity;P:biological_process unknown;C:endomembrane system;BPOF	O.I.	C.G.	H.G.
11.8	99.3	32.9	At1g22510	838857	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:plasma membrane;MOPFBV	O.I.	C.G.	H.G.
11.8	99.3	29.0	At5g42200	834225	zinc finger (C3HC4-type RING finger) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
11.7	99.3	65.7	At5g17860	831654	CAX7 (calcium exchanger 7)	F:cation:cation antiporter activity, calcium:sodium antiporter activity;P:cation transport;C:endomembrane system, integral to membrane;MBOFPA	O.I.	C.G.	H.G.
11.6	99.3	56.2	At2g21640	816702	-	Encodes a protein of unknown function that is a marker for oxidative stress response.	O.I.	C.G.	H.G.
11.5	99.3	38.6	At2g30270	817577	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
11.4	99.3	76.4	At4g22610	828357	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
11.3	99.3	16.1	At5g60270	836149	lectin protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.

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GSM ID	GSM142885
Assay name	CW001_ATH1_A1.4-WestC-kub
GSE experiment	GSE6178: Mechanisms of DNA double strand break repair in Arabidopsis non-homologous end joining mutants

Microarray experiments to specifically-expressed genes

GSM ID GSM142885 Assay name CW001_ATH1_A1.4-WestC-kub GSE experiment GSE6178: Mechanisms of DNA double strand break repair in Arabidopsis non-homologous end joining mutants

GSM ID GSM142885

Assay name CW001_ATH1_A1.4-WestC-kub

GSE experiment GSE6178: Mechanisms of DNA double strand break repair in Arabidopsis non-homologous end joining mutants