CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM142855

Assay name MG001_ATH1_A8-Torres-3N3

GSE experiment GSE6176: Impact of Type III effectors on plant defense responses

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
122.7 99.9 190.5 At3g45060 823641 ATNRT2.6 member of High affinity nitrate transporter family O.I. C.G. H.G.
109.7 99.9 185.2 At1g10585 837600 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
105.3 99.9 115.4 At3g46660 823819 UGT76E12 (UDP-GLUCOSYL TRANSFERASE 76E12) F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
90.0 99.9 84.6 At4g28140 828929 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. O.I. C.G. H.G.
81.1 99.9 29.0 At3g43250 823400 cell cycle control protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPB O.I. C.G. H.G.
70.7 99.9 248.1 At3g48520 824011 CYP94B3 member of CYP94B O.I. C.G. H.G.
64.8 99.8 165.2 At3g21230 821677 4CL5 (4-coumarate:CoA ligase 5) The gene encodes a 4-coumarate coenzyme A ligase being able to use sinapate as substrate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, 5-OH-ferulic acid, ferulic acid and sinapic acid. At4CL5 was unable to use cinnamic acid as substrate. Knockout of At4CL5 (4cl5) revealed no effect on syringyl lignin content indicating that the activity observed does probably not occur in vivo. O.I. C.G. H.G.
63.4 99.8 99.3 At1g61120 842405 TPS04 (TERPENE SYNTHASE 04) Encodes a geranyllinalool synthase that produces a precursor to TMTT, a volatile plant defense C16-homoterpene. GES transcript levels rise in response to alamethicin, a fungal peptide mixture that damages membranes. This transcriptional response is blocked in JA biosynthetic and JA signaling mutants, but GES transcript levels still rise in response to alamethicin in mutants with salicylic acid and ethylene biosynthetic and/or signaling defects. GES transcripts also accumulate in response to a larval infestation. This enzyme does not localize to the plastids, and it may be present in the cytosol or endoplasmic reticulum. O.I. C.G. H.G.
57.6 99.8 188.7 At1g15010 838066 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PB O.I. C.G. H.G.
52.1 99.8 263.2 At4g37990 829955 ELI3-2 (ELICITOR-ACTIVATED GENE 3-2) Encodes an aromatic alcohol:NADP+ oxidoreductase whose mRNA levels are increased in response to treatment with a variety of phytopathogenic bacteria. Though similar to mannitol dehydrogenases, this enzyme does not have mannitol dehydrogenase activity. O.I. C.G. H.G.
51.7 99.8 187.4 At1g43160 840915 RAP2.6 (related to AP2 6) encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family (RAP2.6). The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. C.G. H.G.
50.9 99.8 236.6 At1g52890 841722 ANAC019 (Arabidopsis NAC domain containing protein 19) encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro. O.I. C.G. H.G.
50.8 99.8 102.4 At3g43270 823402 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:plant-type cell wall;PBFM O.I. C.G. H.G.
50.0 99.8 180.3 At1g44350 841026 ILL6 encodes a protein similar to IAA amino acid conjugate hydrolase. O.I. C.G. H.G.
45.5 99.8 194.2 At5g54170 835505 - F:molecular_function unknown;P:response to wounding;C:unknown;MPO O.I. C.G. H.G.
45.1 99.8 249.8 At4g22470 828342 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;MBOPFVA O.I. C.G. H.G.
44.6 99.8 51.2 At3g25180 822110 CYP82G1 member of CYP82G O.I. C.G. H.G.
44.5 99.8 55.6 At4g19230 827663 CYP707A1 Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. CYP707A1 appears to play an important role in determining the ABA levels in dry seeds. Gene involved in postgermination growth. Overexpression of CYP707A1 leads to a decrease in ABA levels and a reduction in after-ripening period to break dormancy. O.I. C.G. H.G.
43.6 99.8 261.5 At5g05600 830443 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, iron ion binding;P:response to salt stress;C:unknown;POBFM O.I. C.G. H.G.
43.2 99.8 149.0 At1g17420 838314 LOX3 Lipoxygenase O.I. C.G. H.G.
42.3 99.8 44.2 At3g50760 824240 GATL2 (Galacturonosyltransferase-like 2) Encodes a protein with putative galacturonosyltransferase activity. O.I. C.G. H.G.
41.9 99.8 280.4 At2g38240 818403 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:response to salt stress;C:unknown;POBFM O.I. C.G. H.G.
39.4 99.8 99.6 At2g29460 817495 ATGSTU4 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
38.4 99.8 75.7 At5g47330 834780 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:response to salt stress;C:endomembrane system;MPFO O.I. C.G. H.G.
38.1 99.8 132.6 At3g53180 824484 catalytic/ glutamate-ammonia ligase F:glutamate-ammonia ligase activity, catalytic activity;P:nitrogen compound metabolic process, N-terminal protein myristoylation, nitrogen fixation, metabolic process, glutamine biosynthetic process;C:unknown;BOAFMP O.I. C.G. H.G.
37.1 99.7 46.8 At3g46670 823820 UGT76E11 (UDP-GLUCOSYL TRANSFERASE 76E11) F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
36.9 99.7 88.4 At5g27520 832812 PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2) encodes a peroxisomal adenine nucleotide transporter, involved in fatty acid beta-oxidation during early stage of postgerminative growth. O.I. C.G. H.G.
36.3 99.7 309.2 At2g06050 815160 OPR3 (OPDA-REDUCTASE 3) Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence. O.I. C.G. H.G.
36.2 99.7 164.7 At3g23550 821934 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAM O.I. C.G. H.G.
36.2 99.7 41.6 At2g42360 818837 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
35.8 99.7 190.7 At3g26830 822298 PAD3 (PHYTOALEXIN DEFICIENT 3) Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin. O.I. C.G. H.G.
35.0 99.7 152.8 At1g51760 841602 IAR3 (IAA-ALANINE RESISTANT 3) encodes a member of the six Arabidopsis IAA-amino acid conjugate hydrolase subfamily and conjugates and conjugates IAA-Ala in vitro. Gene is expressed most strongly in roots, stems, and flowers. O.I. C.G. H.G.
34.4 99.7 143.4 At5g39050 833897 transferase/ transferase, transferring acyl groups other than amino-acyl groups F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
34.3 99.7 242.8 At1g10370 837576 ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9) F:glutathione transferase activity;P:response to water deprivation, toxin catabolic process;C:chloroplast, cytoplasm;BPOMF O.I. C.G. H.G.
34.2 99.7 137.8 At3g55970 824763 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
33.9 99.7 144.7 At3g25780 822169 AOC3 (ALLENE OXIDE CYCLASE 3) Encodes allene oxide cyclase, one of the enzymes involved in jasmonic acid biosynthesis. One of four genes in Arabidopsis that encode this enzyme. mRNA expression is upregulated in senescing leaves. Note: Nomenclature for Arabidopsis allene oxide cyclase 3 (AOC3, AT3G25780) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC3 (AT3G25780) is also referred to as AOC2 in He et al. 2002 Plant Physiology, 128:876-884. O.I. C.G. H.G.
33.6 99.7 313.6 At2g24850 817022 TAT3 (TYROSINE AMINOTRANSFERASE 3) Encodes a tyrosine aminotransferase that is responsive to treatment with jasmonic acid. O.I. C.G. H.G.
33.2 99.7 143.4 At3g49620 824124 DIN11 (DARK INDUCIBLE 11) encodes a protein similar to 2-oxoacid-dependent dioxygenase. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. O.I. C.G. H.G.
31.8 99.7 160.3 At3g51450 824308 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOAF O.I. C.G. H.G.
31.7 99.7 209.5 At3g44860 823620 FAMT (farnesoic acid carboxyl-O-methyltransferase) Encodes a farnesoic acid carboxyl-O-methyltransferase. O.I. C.G. H.G.
31.2 99.7 99.7 At1g02400 839508 GA2OX6 (GIBBERELLIN 2-OXIDASE 6) Encodes a gibberellin 2-oxidase. O.I. C.G. H.G.
31.0 99.7 67.4 At4g23210 828420 protein kinase family protein Encodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid. O.I. C.G. H.G.
30.3 99.7 252.4 At4g27410 828849 RD26 (RESPONSIVE TO DESICCATION 26) Encodes a NAC transcription factor induced in response to dessication. It is localized to the nucleus and acts as a transcriptional activator in ABA-mediated dehydration response. O.I. C.G. H.G.
29.6 99.7 152.5 At3g06500 819828 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative F:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:unknown;OPB O.I. C.G. H.G.
29.6 99.7 84.6 At2g30360 817586 SIP4 (SOS3-INTERACTING PROTEIN 4) Encodes a SOS2-like protein kinase that is a member of the CBL-interacting protein kinase family.Loss of function mutants show a decrease in sensitivity to high pH.Phosphorylates AHA2, a plasma membrane H+ ATPase.This phosphorylation appears to regulate the activity of the proton transporter. O.I. C.G. H.G.
28.9 99.7 71.4 At5g65300 836655 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
28.7 99.7 308.7 At2g43620 818964 chitinase, putative F:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVM O.I. C.G. H.G.
28.5 99.7 147.7 At1g73480 843683 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOPMFVA O.I. C.G. H.G.
28.3 99.7 80.6 At4g17615 827481 CBL1 (CALCINEURIN B-LIKE PROTEIN 1) Member of AtCBL (Calcineurin B-like Calcium Sensor Proteins) family. Protein level is increased upon high salt, mannitol, and cold stresses. CBL1 interacts with CIPK23 and recruits the kinase to the plasma membrane where the substrate(s) of CIPK23 may reside. CBL1 localization is regulated by protein modification including myristolation and acylation. O.I. C.G. H.G.
28.2 99.7 127.8 At5g07010 830592 ST2A (SULFOTRANSFERASE 2A) Encodes a sulfotransferase that acts specifically on 11- and 12-hydroxyjasmonic acid. Transcript levels for this enzyme are increased by treatments with jasmonic acid (JA), 12-hydroxyJA, JA-isoleucine, and 12-oxyphytodienoic acid (a JA precursor). O.I. C.G. H.G.
27.7 99.7 126.0 At2g43020 818904 ATPAO2 (Polyamine oxidase 2) F:electron carrier activity, amine oxidase activity, oxidoreductase activity;P:unknown;C:cellular_component unknown;BMOPFA O.I. C.G. H.G.
27.5 99.7 49.2 At2g46510 819262 ATAIB (ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR) Encodes a nuclear localized BLH domain containing transcriptional activator involved in response to ABA. Overexpression confers enhanced ABA responsiveness while loss of function mutants are ABA sensitive. O.I. C.G. H.G.
26.6 99.7 83.9 At3g63380 825513 calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12) F:calmodulin binding, calcium-transporting ATPase activity;P:calcium ion transport, cation transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAV O.I. C.G. H.G.
26.2 99.7 66.2 At5g38710 833862 proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative F:proline dehydrogenase activity;P:proline catabolic process, glutamate biosynthetic process;C:unknown;BOMFPVA O.I. C.G. H.G.
25.7 99.7 271.9 At5g26340 832703 MSS1 Encodes a protein with high affinity, hexose-specific/H+ symporter activity. The activity of the transporter appears to be negatively regulated by phosphorylation. Importantly, microarray analysis, as well as the study of the expression of this gene in mutants involved in programmed cell death (PCD) demonstrated a tight correlation between this gene's expression and PCD. O.I. C.G. H.G.
25.7 99.7 109.0 At1g57630 842139 disease resistance protein (TIR class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P O.I. C.G. H.G.
25.7 99.7 90.9 At5g53050 835385 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOMPFAV O.I. C.G. H.G.
25.6 99.7 22.7 At3g56260 824792 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
25.2 99.6 110.1 At2g27690 817315 CYP94C1 Encodes a CYP94C1. Has highest omega-hydroxylase activity with 9,10-epoxystearic acid, while also metabolized lauric acid (C12:0) and C18 unsaturated fatty acids. Gene expression is induced in response to wounding and jasmonic acid treatment. O.I. C.G. H.G.
25.0 99.6 194.6 At2g39030 818489 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
24.9 99.6 111.8 At5g13220 831162 JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10) Plants overexpressing At5g13220.3, but not At5g13220.1 showed enhanced insensitivity to MeJa. O.I. C.G. H.G.
24.4 99.6 37.1 At4g04500 825780 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
23.8 99.6 50.1 At4g22530 828348 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA O.I. C.G. H.G.
23.7 99.6 267.6 At2g17840 816293 ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis. O.I. C.G. H.G.
23.4 99.6 148.8 At5g47240 834771 atnudt8 (Arabidopsis thaliana Nudix hydrolase homolog 8) F:hydrolase activity;P:response to wounding;C:cytosol;BOMPAFV O.I. C.G. H.G.
23.4 99.6 43.5 At1g74430 843784 MYB95 (myb domain protein 95) Encodes a putative transcription factor (MYB95). O.I. C.G. H.G.
23.1 99.6 41.0 At1g28190 839713 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB O.I. C.G. H.G.
23.0 99.6 78.0 At2g35980 818171 YLS9 (YELLOW-LEAF-SPECIFIC GENE 9) Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and during senescence. The gene product is localized to the chloroplast. O.I. C.G. H.G.
22.8 99.6 29.7 At3g14440 820667 NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3) Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chloroplast stroma and thylakoid membrane. O.I. C.G. H.G.
22.7 99.6 67.8 At4g11890 826796 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
22.4 99.6 70.1 At2g16630 816164 proline-rich family protein F:unknown;P:unknown;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
22.3 99.6 200.2 At5g51070 835180 ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1) ATP-dependent Clp protease regulatory subunit O.I. C.G. H.G.
21.9 99.6 152.4 At1g26770 839218 ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. O.I. C.G. H.G.
21.9 99.6 56.8 At5g57150 835821 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMVO O.I. C.G. H.G.
21.9 99.6 32.3 At3g02150 821061 PTF1 (PLASTID TRANSCRIPTION FACTOR 1) a chloroplast trans-acting factor of the psbD light-responsive promoter.TCP gene involved in heterochronic control of leaf differentiation. O.I. C.G. H.G.
21.7 99.6 199.8 At5g54960 835587 PDC2 (pyruvate decarboxylase-2) pyruvate decarboxylase-2 O.I. C.G. H.G.
21.7 99.6 27.0 At1g69480 843280 EXS family protein / ERD1/XPR1/SYG1 family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, plasma membrane;FMPOB O.I. C.G. H.G.
20.8 99.6 27.0 At2g40340 818627 AP2 domain-containing transcription factor, putative (DRE2B) encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. O.I. C.G. H.G.
20.7 99.6 104.2 At5g12010 831074 unknown protein F:unknown;P:response to salt stress;C:chloroplast, plasma membrane, membrane;MPFO O.I. C.G. H.G.
20.6 99.6 110.3 At4g20860 827834 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to cyclopentenone;C:endomembrane system;BFPOAM O.I. C.G. H.G.
20.6 99.6 31.3 At2g30540 817603 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO O.I. C.G. H.G.
20.6 99.6 29.9 At2g20880 816622 AP2 domain-containing transcription factor, putative F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, cytoplasm;POMBFV O.I. C.G. H.G.
20.3 99.6 68.3 At5g50570 835126 squamosa promoter-binding protein, putative F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PM O.I. C.G. H.G.
20.2 99.6 146.7 At2g30140 817566 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:response to cyclopentenone;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
20.2 99.6 49.3 At1g80820 844421 CCR2 (CINNAMOYL COA REDUCTASE) Encodes an cinnamoyl CoA reductase isoform. Involved in lignin biosynthesis. O.I. C.G. H.G.
20.1 99.6 44.9 At5g57630 835868 CIPK21 (CBL-interacting protein kinase 21) CBL-interacting protein kinase O.I. C.G. H.G.
20.1 99.6 36.0 At1g74360 843777 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:mitochondrion;MPOBFVA O.I. C.G. H.G.
19.9 99.6 57.8 At5g13080 831147 WRKY75 WRKY75 is one of several transcription factors induced during Pi deprivation. It is nuclear localized and regulated differentially during Pi starvation. RNAi mediated suppression of WRKY75 made the plants more susceptible to Pi stress as indicated by the higher accumulation of anthocyanin during Pi starvation. O.I. C.G. H.G.
19.8 99.6 103.3 At1g69490 843282 NAP (NAC-like, activated by AP3/PI) Encodes a member of the NAC transcription factor gene family. It is expressed in floral primordia and upregulated by AP3 and PI. Its expression is associated with leaf senescence. O.I. C.G. H.G.
19.7 99.6 158.4 At2g02990 814828 RNS1 (RIBONUCLEASE 1) member of the ribonuclease T2 family, responds to inorganic phosphate starvation, and inhibits production of anthocyanin. Also involved in wound-induced signaling independent of jasmonic acid. O.I. C.G. H.G.
19.6 99.6 270.4 At1g19180 838501 JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1) JAZ1 is a nuclear-localized protein involved in jasmonate signaling. JAZ1 transcript levels rise in response to a jasmonate stimulus. JAZ1 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ1:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation. The Jas domain appears to be important for JAZ1-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2. O.I. C.G. H.G.
19.6 99.6 148.0 At1g70700 843407 TIFY7 JAZ9 is a protein presumed to be involved in jasmonate signaling. JAZ9 transcript levels rise in response to a jasmonate stimulus. JAZ9 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. The Jas domain appears to be important for JAZ9-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2. O.I. C.G. H.G.
19.4 99.6 175.9 At1g61890 842485 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
19.4 99.6 102.1 At3g14050 820619 RSH2 (RELA-SPOT HOMOLOG 2) F:GTP diphosphokinase activity;P:response to abscisic acid stimulus, response to wounding;C:chloroplast;BOMPFAV O.I. C.G. H.G.
19.3 99.6 31.0 At1g28050 839698 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POAF O.I. C.G. H.G.
19.0 99.5 74.8 At2g34810 818046 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to jasmonic acid stimulus, response to wounding;C:endomembrane system;FBPOAM O.I. C.G. H.G.
19.0 99.5 22.4 At2g47190 819332 MYB2 (MYB DOMAIN PROTEIN 2) Encodes a MYB transcription factor that possesses an R2R3 MYB DNA binding domain and is known to regulate the expression of salt- and dehydration-responsive genes. Has been shown to bind calmodulin. O.I. C.G. H.G.
18.9 99.5 214.6 At4g34230 829572 ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5) Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use sinapyl, caffeyl, coniferyl and d-hydroxyconiferyl aldehydes as substrates. O.I. C.G. H.G.
18.9 99.5 53.2 At2g29470 817496 ATGSTU3 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 3) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
18.8 99.5 7.4 At1g52900 841723 disease resistance protein (TIR class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PMBO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
122.7	99.9	190.5	At3g45060	823641	ATNRT2.6	member of High affinity nitrate transporter family	O.I.	C.G.	H.G.
109.7	99.9	185.2	At1g10585	837600	transcription factor	F:transcription factor activity;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
105.3	99.9	115.4	At3g46660	823819	UGT76E12 (UDP-GLUCOSYL TRANSFERASE 76E12)	F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
90.0	99.9	84.6	At4g28140	828929	AP2 domain-containing transcription factor, putative	encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.	O.I.	C.G.	H.G.
81.1	99.9	29.0	At3g43250	823400	cell cycle control protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPB	O.I.	C.G.	H.G.
70.7	99.9	248.1	At3g48520	824011	CYP94B3	member of CYP94B	O.I.	C.G.	H.G.
64.8	99.8	165.2	At3g21230	821677	4CL5 (4-coumarate:CoA ligase 5)	The gene encodes a 4-coumarate coenzyme A ligase being able to use sinapate as substrate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, 5-OH-ferulic acid, ferulic acid and sinapic acid. At4CL5 was unable to use cinnamic acid as substrate. Knockout of At4CL5 (4cl5) revealed no effect on syringyl lignin content indicating that the activity observed does probably not occur in vivo.	O.I.	C.G.	H.G.
63.4	99.8	99.3	At1g61120	842405	TPS04 (TERPENE SYNTHASE 04)	Encodes a geranyllinalool synthase that produces a precursor to TMTT, a volatile plant defense C16-homoterpene. GES transcript levels rise in response to alamethicin, a fungal peptide mixture that damages membranes. This transcriptional response is blocked in JA biosynthetic and JA signaling mutants, but GES transcript levels still rise in response to alamethicin in mutants with salicylic acid and ethylene biosynthetic and/or signaling defects. GES transcripts also accumulate in response to a larval infestation. This enzyme does not localize to the plastids, and it may be present in the cytosol or endoplasmic reticulum.	O.I.	C.G.	H.G.
57.6	99.8	188.7	At1g15010	838066	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PB	O.I.	C.G.	H.G.
52.1	99.8	263.2	At4g37990	829955	ELI3-2 (ELICITOR-ACTIVATED GENE 3-2)	Encodes an aromatic alcohol:NADP+ oxidoreductase whose mRNA levels are increased in response to treatment with a variety of phytopathogenic bacteria. Though similar to mannitol dehydrogenases, this enzyme does not have mannitol dehydrogenase activity.	O.I.	C.G.	H.G.
51.7	99.8	187.4	At1g43160	840915	RAP2.6 (related to AP2 6)	encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family (RAP2.6). The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	C.G.	H.G.
50.9	99.8	236.6	At1g52890	841722	ANAC019 (Arabidopsis NAC domain containing protein 19)	encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro.	O.I.	C.G.	H.G.
50.8	99.8	102.4	At3g43270	823402	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:plant-type cell wall;PBFM	O.I.	C.G.	H.G.
50.0	99.8	180.3	At1g44350	841026	ILL6	encodes a protein similar to IAA amino acid conjugate hydrolase.	O.I.	C.G.	H.G.
45.5	99.8	194.2	At5g54170	835505	-	F:molecular_function unknown;P:response to wounding;C:unknown;MPO	O.I.	C.G.	H.G.
45.1	99.8	249.8	At4g22470	828342	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;MBOPFVA	O.I.	C.G.	H.G.
44.6	99.8	51.2	At3g25180	822110	CYP82G1	member of CYP82G	O.I.	C.G.	H.G.
44.5	99.8	55.6	At4g19230	827663	CYP707A1	Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. CYP707A1 appears to play an important role in determining the ABA levels in dry seeds. Gene involved in postgermination growth. Overexpression of CYP707A1 leads to a decrease in ABA levels and a reduction in after-ripening period to break dormancy.	O.I.	C.G.	H.G.
43.6	99.8	261.5	At5g05600	830443	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, iron ion binding;P:response to salt stress;C:unknown;POBFM	O.I.	C.G.	H.G.
43.2	99.8	149.0	At1g17420	838314	LOX3	Lipoxygenase	O.I.	C.G.	H.G.
42.3	99.8	44.2	At3g50760	824240	GATL2 (Galacturonosyltransferase-like 2)	Encodes a protein with putative galacturonosyltransferase activity.	O.I.	C.G.	H.G.
41.9	99.8	280.4	At2g38240	818403	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity;P:response to salt stress;C:unknown;POBFM	O.I.	C.G.	H.G.
39.4	99.8	99.6	At2g29460	817495	ATGSTU4 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
38.4	99.8	75.7	At5g47330	834780	palmitoyl protein thioesterase family protein	F:palmitoyl-(protein) hydrolase activity;P:response to salt stress;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
38.1	99.8	132.6	At3g53180	824484	catalytic/ glutamate-ammonia ligase	F:glutamate-ammonia ligase activity, catalytic activity;P:nitrogen compound metabolic process, N-terminal protein myristoylation, nitrogen fixation, metabolic process, glutamine biosynthetic process;C:unknown;BOAFMP	O.I.	C.G.	H.G.
37.1	99.7	46.8	At3g46670	823820	UGT76E11 (UDP-GLUCOSYL TRANSFERASE 76E11)	F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
36.9	99.7	88.4	At5g27520	832812	PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2)	encodes a peroxisomal adenine nucleotide transporter, involved in fatty acid beta-oxidation during early stage of postgerminative growth.	O.I.	C.G.	H.G.
36.3	99.7	309.2	At2g06050	815160	OPR3 (OPDA-REDUCTASE 3)	Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence.	O.I.	C.G.	H.G.
36.2	99.7	164.7	At3g23550	821934	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAM	O.I.	C.G.	H.G.
36.2	99.7	41.6	At2g42360	818837	zinc finger (C3HC4-type RING finger) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
35.8	99.7	190.7	At3g26830	822298	PAD3 (PHYTOALEXIN DEFICIENT 3)	Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin.	O.I.	C.G.	H.G.
35.0	99.7	152.8	At1g51760	841602	IAR3 (IAA-ALANINE RESISTANT 3)	encodes a member of the six Arabidopsis IAA-amino acid conjugate hydrolase subfamily and conjugates and conjugates IAA-Ala in vitro. Gene is expressed most strongly in roots, stems, and flowers.	O.I.	C.G.	H.G.
34.4	99.7	143.4	At5g39050	833897	transferase/ transferase, transferring acyl groups other than amino-acyl groups	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
34.3	99.7	242.8	At1g10370	837576	ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9)	F:glutathione transferase activity;P:response to water deprivation, toxin catabolic process;C:chloroplast, cytoplasm;BPOMF	O.I.	C.G.	H.G.
34.2	99.7	137.8	At3g55970	824763	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
33.9	99.7	144.7	At3g25780	822169	AOC3 (ALLENE OXIDE CYCLASE 3)	Encodes allene oxide cyclase, one of the enzymes involved in jasmonic acid biosynthesis. One of four genes in Arabidopsis that encode this enzyme. mRNA expression is upregulated in senescing leaves. Note: Nomenclature for Arabidopsis allene oxide cyclase 3 (AOC3, AT3G25780) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC3 (AT3G25780) is also referred to as AOC2 in He et al. 2002 Plant Physiology, 128:876-884.	O.I.	C.G.	H.G.
33.6	99.7	313.6	At2g24850	817022	TAT3 (TYROSINE AMINOTRANSFERASE 3)	Encodes a tyrosine aminotransferase that is responsive to treatment with jasmonic acid.	O.I.	C.G.	H.G.
33.2	99.7	143.4	At3g49620	824124	DIN11 (DARK INDUCIBLE 11)	encodes a protein similar to 2-oxoacid-dependent dioxygenase. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.	O.I.	C.G.	H.G.
31.8	99.7	160.3	At3g51450	824308	strictosidine synthase family protein	F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOAF	O.I.	C.G.	H.G.
31.7	99.7	209.5	At3g44860	823620	FAMT (farnesoic acid carboxyl-O-methyltransferase)	Encodes a farnesoic acid carboxyl-O-methyltransferase.	O.I.	C.G.	H.G.
31.2	99.7	99.7	At1g02400	839508	GA2OX6 (GIBBERELLIN 2-OXIDASE 6)	Encodes a gibberellin 2-oxidase.	O.I.	C.G.	H.G.
31.0	99.7	67.4	At4g23210	828420	protein kinase family protein	Encodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid.	O.I.	C.G.	H.G.
30.3	99.7	252.4	At4g27410	828849	RD26 (RESPONSIVE TO DESICCATION 26)	Encodes a NAC transcription factor induced in response to dessication. It is localized to the nucleus and acts as a transcriptional activator in ABA-mediated dehydration response.	O.I.	C.G.	H.G.
29.6	99.7	152.5	At3g06500	819828	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	F:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:unknown;OPB	O.I.	C.G.	H.G.
29.6	99.7	84.6	At2g30360	817586	SIP4 (SOS3-INTERACTING PROTEIN 4)	Encodes a SOS2-like protein kinase that is a member of the CBL-interacting protein kinase family.Loss of function mutants show a decrease in sensitivity to high pH.Phosphorylates AHA2, a plasma membrane H+ ATPase.This phosphorylation appears to regulate the activity of the proton transporter.	O.I.	C.G.	H.G.
28.9	99.7	71.4	At5g65300	836655	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
28.7	99.7	308.7	At2g43620	818964	chitinase, putative	F:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVM	O.I.	C.G.	H.G.
28.5	99.7	147.7	At1g73480	843683	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOPMFVA	O.I.	C.G.	H.G.
28.3	99.7	80.6	At4g17615	827481	CBL1 (CALCINEURIN B-LIKE PROTEIN 1)	Member of AtCBL (Calcineurin B-like Calcium Sensor Proteins) family. Protein level is increased upon high salt, mannitol, and cold stresses. CBL1 interacts with CIPK23 and recruits the kinase to the plasma membrane where the substrate(s) of CIPK23 may reside. CBL1 localization is regulated by protein modification including myristolation and acylation.	O.I.	C.G.	H.G.
28.2	99.7	127.8	At5g07010	830592	ST2A (SULFOTRANSFERASE 2A)	Encodes a sulfotransferase that acts specifically on 11- and 12-hydroxyjasmonic acid. Transcript levels for this enzyme are increased by treatments with jasmonic acid (JA), 12-hydroxyJA, JA-isoleucine, and 12-oxyphytodienoic acid (a JA precursor).	O.I.	C.G.	H.G.
27.7	99.7	126.0	At2g43020	818904	ATPAO2 (Polyamine oxidase 2)	F:electron carrier activity, amine oxidase activity, oxidoreductase activity;P:unknown;C:cellular_component unknown;BMOPFA	O.I.	C.G.	H.G.
27.5	99.7	49.2	At2g46510	819262	ATAIB (ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR)	Encodes a nuclear localized BLH domain containing transcriptional activator involved in response to ABA. Overexpression confers enhanced ABA responsiveness while loss of function mutants are ABA sensitive.	O.I.	C.G.	H.G.
26.6	99.7	83.9	At3g63380	825513	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12)	F:calmodulin binding, calcium-transporting ATPase activity;P:calcium ion transport, cation transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAV	O.I.	C.G.	H.G.
26.2	99.7	66.2	At5g38710	833862	proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative	F:proline dehydrogenase activity;P:proline catabolic process, glutamate biosynthetic process;C:unknown;BOMFPVA	O.I.	C.G.	H.G.
25.7	99.7	271.9	At5g26340	832703	MSS1	Encodes a protein with high affinity, hexose-specific/H+ symporter activity. The activity of the transporter appears to be negatively regulated by phosphorylation. Importantly, microarray analysis, as well as the study of the expression of this gene in mutants involved in programmed cell death (PCD) demonstrated a tight correlation between this gene's expression and PCD.	O.I.	C.G.	H.G.
25.7	99.7	109.0	At1g57630	842139	disease resistance protein (TIR class), putative	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P	O.I.	C.G.	H.G.
25.7	99.7	90.9	At5g53050	835385	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOMPFAV	O.I.	C.G.	H.G.
25.6	99.7	22.7	At3g56260	824792	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
25.2	99.6	110.1	At2g27690	817315	CYP94C1	Encodes a CYP94C1. Has highest omega-hydroxylase activity with 9,10-epoxystearic acid, while also metabolized lauric acid (C12:0) and C18 unsaturated fatty acids. Gene expression is induced in response to wounding and jasmonic acid treatment.	O.I.	C.G.	H.G.
25.0	99.6	194.6	At2g39030	818489	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
24.9	99.6	111.8	At5g13220	831162	JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)	Plants overexpressing At5g13220.3, but not At5g13220.1 showed enhanced insensitivity to MeJa.	O.I.	C.G.	H.G.
24.4	99.6	37.1	At4g04500	825780	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
23.8	99.6	50.1	At4g22530	828348	embryo-abundant protein-related	F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA	O.I.	C.G.	H.G.
23.7	99.6	267.6	At2g17840	816293	ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7)	Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis.	O.I.	C.G.	H.G.
23.4	99.6	148.8	At5g47240	834771	atnudt8 (Arabidopsis thaliana Nudix hydrolase homolog 8)	F:hydrolase activity;P:response to wounding;C:cytosol;BOMPAFV	O.I.	C.G.	H.G.
23.4	99.6	43.5	At1g74430	843784	MYB95 (myb domain protein 95)	Encodes a putative transcription factor (MYB95).	O.I.	C.G.	H.G.
23.1	99.6	41.0	At1g28190	839713	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB	O.I.	C.G.	H.G.
23.0	99.6	78.0	At2g35980	818171	YLS9 (YELLOW-LEAF-SPECIFIC GENE 9)	Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and during senescence. The gene product is localized to the chloroplast.	O.I.	C.G.	H.G.
22.8	99.6	29.7	At3g14440	820667	NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3)	Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chloroplast stroma and thylakoid membrane.	O.I.	C.G.	H.G.
22.7	99.6	67.8	At4g11890	826796	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
22.4	99.6	70.1	At2g16630	816164	proline-rich family protein	F:unknown;P:unknown;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
22.3	99.6	200.2	At5g51070	835180	ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1)	ATP-dependent Clp protease regulatory subunit	O.I.	C.G.	H.G.
21.9	99.6	152.4	At1g26770	839218	ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)	Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	O.I.	C.G.	H.G.
21.9	99.6	56.8	At5g57150	835821	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMVO	O.I.	C.G.	H.G.
21.9	99.6	32.3	At3g02150	821061	PTF1 (PLASTID TRANSCRIPTION FACTOR 1)	a chloroplast trans-acting factor of the psbD light-responsive promoter.TCP gene involved in heterochronic control of leaf differentiation.	O.I.	C.G.	H.G.
21.7	99.6	199.8	At5g54960	835587	PDC2 (pyruvate decarboxylase-2)	pyruvate decarboxylase-2	O.I.	C.G.	H.G.
21.7	99.6	27.0	At1g69480	843280	EXS family protein / ERD1/XPR1/SYG1 family protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, plasma membrane;FMPOB	O.I.	C.G.	H.G.
20.8	99.6	27.0	At2g40340	818627	AP2 domain-containing transcription factor, putative (DRE2B)	encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.	O.I.	C.G.	H.G.
20.7	99.6	104.2	At5g12010	831074	unknown protein	F:unknown;P:response to salt stress;C:chloroplast, plasma membrane, membrane;MPFO	O.I.	C.G.	H.G.
20.6	99.6	110.3	At4g20860	827834	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to cyclopentenone;C:endomembrane system;BFPOAM	O.I.	C.G.	H.G.
20.6	99.6	31.3	At2g30540	817603	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
20.6	99.6	29.9	At2g20880	816622	AP2 domain-containing transcription factor, putative	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, cytoplasm;POMBFV	O.I.	C.G.	H.G.
20.3	99.6	68.3	At5g50570	835126	squamosa promoter-binding protein, putative	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PM	O.I.	C.G.	H.G.
20.2	99.6	146.7	At2g30140	817566	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:response to cyclopentenone;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
20.2	99.6	49.3	At1g80820	844421	CCR2 (CINNAMOYL COA REDUCTASE)	Encodes an cinnamoyl CoA reductase isoform. Involved in lignin biosynthesis.	O.I.	C.G.	H.G.
20.1	99.6	44.9	At5g57630	835868	CIPK21 (CBL-interacting protein kinase 21)	CBL-interacting protein kinase	O.I.	C.G.	H.G.
20.1	99.6	36.0	At1g74360	843777	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:mitochondrion;MPOBFVA	O.I.	C.G.	H.G.
19.9	99.6	57.8	At5g13080	831147	WRKY75	WRKY75 is one of several transcription factors induced during Pi deprivation. It is nuclear localized and regulated differentially during Pi starvation. RNAi mediated suppression of WRKY75 made the plants more susceptible to Pi stress as indicated by the higher accumulation of anthocyanin during Pi starvation.	O.I.	C.G.	H.G.
19.8	99.6	103.3	At1g69490	843282	NAP (NAC-like, activated by AP3/PI)	Encodes a member of the NAC transcription factor gene family. It is expressed in floral primordia and upregulated by AP3 and PI. Its expression is associated with leaf senescence.	O.I.	C.G.	H.G.
19.7	99.6	158.4	At2g02990	814828	RNS1 (RIBONUCLEASE 1)	member of the ribonuclease T2 family, responds to inorganic phosphate starvation, and inhibits production of anthocyanin. Also involved in wound-induced signaling independent of jasmonic acid.	O.I.	C.G.	H.G.
19.6	99.6	270.4	At1g19180	838501	JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1)	JAZ1 is a nuclear-localized protein involved in jasmonate signaling. JAZ1 transcript levels rise in response to a jasmonate stimulus. JAZ1 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ1:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation. The Jas domain appears to be important for JAZ1-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.	O.I.	C.G.	H.G.
19.6	99.6	148.0	At1g70700	843407	TIFY7	JAZ9 is a protein presumed to be involved in jasmonate signaling. JAZ9 transcript levels rise in response to a jasmonate stimulus. JAZ9 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. The Jas domain appears to be important for JAZ9-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.	O.I.	C.G.	H.G.
19.4	99.6	175.9	At1g61890	842485	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
19.4	99.6	102.1	At3g14050	820619	RSH2 (RELA-SPOT HOMOLOG 2)	F:GTP diphosphokinase activity;P:response to abscisic acid stimulus, response to wounding;C:chloroplast;BOMPFAV	O.I.	C.G.	H.G.
19.3	99.6	31.0	At1g28050	839698	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POAF	O.I.	C.G.	H.G.
19.0	99.5	74.8	At2g34810	818046	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to jasmonic acid stimulus, response to wounding;C:endomembrane system;FBPOAM	O.I.	C.G.	H.G.
19.0	99.5	22.4	At2g47190	819332	MYB2 (MYB DOMAIN PROTEIN 2)	Encodes a MYB transcription factor that possesses an R2R3 MYB DNA binding domain and is known to regulate the expression of salt- and dehydration-responsive genes. Has been shown to bind calmodulin.	O.I.	C.G.	H.G.
18.9	99.5	214.6	At4g34230	829572	ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5)	Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use sinapyl, caffeyl, coniferyl and d-hydroxyconiferyl aldehydes as substrates.	O.I.	C.G.	H.G.
18.9	99.5	53.2	At2g29470	817496	ATGSTU3 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 3)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
18.8	99.5	7.4	At1g52900	841723	disease resistance protein (TIR class), putative	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PMBO	O.I.	C.G.	H.G.

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GSM ID	GSM142855
Assay name	MG001_ATH1_A8-Torres-3N3
GSE experiment	GSE6176: Impact of Type III effectors on plant defense responses

Microarray experiments to specifically-expressed genes

GSM ID GSM142855 Assay name MG001_ATH1_A8-Torres-3N3 GSE experiment GSE6176: Impact of Type III effectors on plant defense responses

GSM ID GSM142855

Assay name MG001_ATH1_A8-Torres-3N3

GSE experiment GSE6176: Impact of Type III effectors on plant defense responses