Microarray experiments to specifically-expressed genes

GSM ID GSM142842
Assay name MG001_ATH1_A23-Torres-7N3
GSE experiment GSE6176: Impact of Type III effectors on plant defense responses

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
75.599.9204.6At3g55970824763oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
49.399.8250.5At2g02990814828RNS1 (RIBONUCLEASE 1)member of the ribonuclease T2 family, responds to inorganic phosphate starvation, and inhibits production of anthocyanin. Also involved in wound-induced signaling independent of jasmonic acid.O.I.C.G.H.G.
34.799.724.2At3g14395820661unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
32.299.7245.8At2g38240818403oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity;P:response to salt stress;C:unknown;POBFMO.I.C.G.H.G.
31.499.7134.8At5g07010830592ST2A (SULFOTRANSFERASE 2A)Encodes a sulfotransferase that acts specifically on 11- and 12-hydroxyjasmonic acid. Transcript levels for this enzyme are increased by treatments with jasmonic acid (JA), 12-hydroxyJA, JA-isoleucine, and 12-oxyphytodienoic acid (a JA precursor).O.I.C.G.H.G.
31.399.780.4At3g43270823402pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:plant-type cell wall;PBFMO.I.C.G.H.G.
30.099.7199.7At4g37990829955ELI3-2 (ELICITOR-ACTIVATED GENE 3-2)Encodes an aromatic alcohol:NADP+ oxidoreductase whose mRNA levels are increased in response to treatment with a variety of phytopathogenic bacteria. Though similar to mannitol dehydrogenases, this enzyme does not have mannitol dehydrogenase activity.O.I.C.G.H.G.
28.699.765.3At5g47330834780palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:response to salt stress;C:endomembrane system;MPFOO.I.C.G.H.G.
28.199.7118.1At1g30250839905unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
27.299.776.4At2g37770818354aldo/keto reductase family proteinF:oxidoreductase activity;P:oxidation reduction;C:unknown;BOMFPAO.I.C.G.H.G.
26.799.7279.5At2g24850817022TAT3 (TYROSINE AMINOTRANSFERASE 3)Encodes a tyrosine aminotransferase that is responsive to treatment with jasmonic acid.O.I.C.G.H.G.
25.699.793.4At5g65870836716ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR)Probable phytosulfokines 5 precursor, coding for a unique plant peptide growth factor.O.I.C.G.H.G.
24.499.699.2At4g33540829493metallo-beta-lactamase family proteinF:hydrolase activity, catalytic activity;P:response to arsenic, metabolic process;C:chloroplast;OBAPMFO.I.C.G.H.G.
23.599.671.9At2g16630816164proline-rich family proteinF:unknown;P:unknown;C:endomembrane system;MPBOFVAO.I.C.G.H.G.
22.299.6113.8At5g55050835596GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
21.699.6244.2At2g43510818952ATTI1Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory.O.I.C.G.H.G.
21.699.638.3At2g25000817039WRKY60Pathogen-induced transcription factor. Forms protein complexes with itself and with WRKY40. Coexpression with WRKY18 or WRKY40 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.O.I.C.G.H.G.
21.499.666.6At5g46050834646PTR3 (PEPTIDE TRANSPORTER 3)Encodes a di- and tri-peptide transporter involved in responses to wounding, virulent bacterial pathogens, and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies.O.I.C.G.H.G.
20.399.622.0At3g26820822297esterase/lipase/thioesterase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity;P:biological_process unknown;C:unknown;BPOMFO.I.C.G.H.G.
19.699.6175.2At5g05600830443oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, iron ion binding;P:response to salt stress;C:unknown;POBFMO.I.C.G.H.G.
19.699.652.6At3g28540822484AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BOMFPAVO.I.C.G.H.G.
19.399.629.0At2g36590818232ProT3 (PROLINE TRANSPORTER 3)Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed in leaves, flowers and siliques but to a much lesser extent in roots.O.I.C.G.H.G.
19.299.677.2At5g52450835321MATE efflux protein-relatedF:antiporter activity, drug transporter activity, transporter activity;P:response to nematode;C:plasma membrane, membrane;BOPFAMO.I.C.G.H.G.
18.999.5127.6At5g06870830578PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2)Encodes a polygalacturonase inhibiting protein involved in plant defense response. PGIPs inhibit the activity of pectin degrading enzymes such as those produced by fungal pathogens. PGIP2 is induced by fungal infection and methyl jasmonate.O.I.C.G.H.G.
18.999.546.2At1g33960840293AIG1 (AVRRPT2-INDUCED GENE 1)Identified as a gene that is induced by avirulence gene avrRpt2 and RPS2 after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2O.I.C.G.H.G.
17.699.5163.0At2g39030818489GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
16.999.5103.2At3g60130825183BGLU16 (BETA GLUCOSIDASE 16)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:unknown;BOPMFAO.I.C.G.H.G.
16.999.560.0At5g54610835550ANK (ankyrin)Induced in response to Salicylic acid. Belongs to the ankyrin repeat protein family.O.I.C.G.H.G.
16.599.569.0At1g55910842041ZIP11 (ZINC TRANSPORTER 11 PRECURSOR)member of Putative zinc transporter ZIP2 - like familyO.I.C.G.H.G.
16.399.5302.5At4g17090827419CT-BMY (CHLOROPLAST BETA-AMYLASE)Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected).O.I.C.G.H.G.
16.299.5107.1At3g28270822453-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMPOAFVO.I.C.G.H.G.
16.299.571.8At1g55265841971unknown proteinF:unknown;P:biological_process unknown;C:vacuole;PBOO.I.C.G.H.G.
15.599.5141.6At4g08870826458arginase, putativeEncodes one of the two arginase in the genome. Gene expression is enhanced by methyl jasmonate treatment.O.I.C.G.H.G.
15.599.514.1At3g08870820035lectin protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
15.499.567.4At2g34810818046FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to jasmonic acid stimulus, response to wounding;C:endomembrane system;FBPOAMO.I.C.G.H.G.
15.299.4195.0At2g43570818959chitinase, putativeF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMVO.I.C.G.H.G.
14.899.4201.6At2g33380817901RD20 (RESPONSIVE TO DESSICATION 20)Encodes a calcium binding protein whose mRNA is induced upon treatment with NaCl, ABA and in response to dessication. mRNA expression under drought conditions is apparent particularly in leaves and flowers.O.I.C.G.H.G.
14.799.455.4At1g31550840045GDSL-motif lipase, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuole;PBFOMO.I.C.G.H.G.
14.699.461.2At2g04160814953AIR3isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.O.I.C.G.H.G.
14.399.4111.5At3g48520824011CYP94B3member of CYP94BO.I.C.G.H.G.
14.399.4104.7At3g03470821250CYP89A9member of CYP89AO.I.C.G.H.G.
14.399.462.7At1g26560839196BGLU40 (BETA GLUCOSIDASE 40)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:apoplast, chloroplast;BOPMFAO.I.C.G.H.G.
14.399.457.0At1g32940840188SBT3.5F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOAFMO.I.C.G.H.G.
14.399.428.4At4g04500825780protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
13.999.4126.8At3g47960823951proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;PMBFOO.I.C.G.H.G.
13.799.465.5At1g10585837600transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
13.699.4120.1At2g30140817566UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:response to cyclopentenone;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
13.199.4134.8At4g22470828342protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;MBOPFVAO.I.C.G.H.G.
12.999.3139.1At1g69870843323proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:response to salt stress, oligopeptide transport;C:plasma membrane, membrane;PBMFOO.I.C.G.H.G.
12.899.397.5At3g11660820338NHL1encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus. Localization of the gene product is similar to that of NHL3 (plasma membrane) but it is yet inconclusive.O.I.C.G.H.G.
12.799.3213.0At4g12490826861protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:defense response to fungus, lipid transport;C:unknown;PBOMVFAO.I.C.G.H.G.
12.699.3304.9At4g23600828460CORI3 (CORONATINE INDUCED 1)Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding.O.I.C.G.H.G.
12.599.32.8At5g596403771538transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
12.299.330.4At2g39710818555aspartyl protease family proteinEncodes a Cysteine-rich peptide (CRP) family proteinO.I.C.G.H.G.
12.299.318.1At1g33260840220protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
11.999.392.0At5g22500832311FAR1 (FATTY ACID REDUCTASE 1)F:oxidoreductase activity, acting on the CH-CH group of donors, fatty acyl-CoA reductase (alcohol-forming) activity;P:microsporogenesis, metabolic process;C:chloroplast;MBFOPO.I.C.G.H.G.
11.799.3281.3At3g57260824893BGL2 (BETA-1,3-GLUCANASE 2)beta 1,3-glucanaseO.I.C.G.H.G.
11.799.372.5At3g51430824306YLS2strictosidine synthase-like proteinO.I.C.G.H.G.
11.599.335.8At5g50915835164basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:response to gibberellin stimulus;C:nucleus;PFMO.I.C.G.H.G.
11.599.34.7At1g65890842901AAE12 (ACYL ACTIVATING ENZYME 12)F:catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
11.199.2102.6At3g44880823622ACD1 (ACCELERATED CELL DEATH 1)Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato pathogens and to ethylene.O.I.C.G.H.G.
11.199.239.0At5g36220833619CYP81D1 (CYTOCHROME P450 81D1)member of CYP81DO.I.C.G.H.G.
11.199.221.3At4g15660827243glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOBO.I.C.G.H.G.
11.099.290.8At5g06530830541ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:plasma membrane;BOMFAPVO.I.C.G.H.G.
11.099.235.0At5g54250835513ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4)member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent.O.I.C.G.H.G.
10.799.296.7At2g37760818353aldo/keto reductase family proteinF:oxidoreductase activity;P:response to cadmium ion;C:unknown;BOMFPAO.I.C.G.H.G.
10.799.276.6At3g04070819562anac047 (Arabidopsis NAC domain containing protein 47)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
10.699.286.8At2g03980814924GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
10.699.24.8At4g18000827525unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.499.221.0At2g29120817460ATGLR2.7member of Putative ligand-gated ion channel subunit familyO.I.C.G.H.G.
10.299.293.0At3g20500821596PAP18 (PURPLE ACID PHOSPHATASE 18)F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMFAO.I.C.G.H.G.
10.299.263.0At2g29350817484SAG13senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenaseO.I.C.G.H.G.
10.199.238.3At1g24575839072unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
9.999.144.5At3g47480823902calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOBO.I.C.G.H.G.
9.999.124.2At3g46670823820UGT76E11 (UDP-GLUCOSYL TRANSFERASE 76E11)F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
9.999.117.2At3g11580820331DNA-binding protein, putativeF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.C.G.H.G.
9.899.134.5At5g46230834665unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
9.799.143.1At4g24120828512YSL1 (YELLOW STRIPE LIKE 1)Member of a small family of oligopeptide transporters similar to the yellow stripe locus of maize (ZmYS1).O.I.C.G.H.G.
9.799.134.7At1g09500837475cinnamyl-alcohol dehydrogenase family / CAD familysimilar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenaseO.I.C.G.H.G.
9.799.114.0At3g56260824792unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.C.G.H.G.
9.699.1103.5At4g12500826862protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:unknown;POBMVFAO.I.C.G.H.G.
9.699.174.6At3g03640821201BGLU25 (BETA GLUCOSIDASE 25)Encodes beta-glucosidase (GLUC).O.I.C.G.H.G.
9.699.138.1At4g37430829897CYP91A2 (CYTOCHROME P450 MONOOXYGENASE 91A2)Encodes a member of the CYP81F cytochrome P450 monooxygenase subfamily.O.I.C.G.H.G.
9.599.1251.7At5g160108314583-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family proteinF:oxidoreductase activity, acting on the CH-CH group of donors, 3-oxo-5-alpha-steroid 4-dehydrogenase activity;P:lipid metabolic process;C:chloroplast, chloroplast envelope;MOFPBO.I.C.G.H.G.
9.299.184.9At3g51860824349CAX3 (CATION EXCHANGER 3)F:cation:cation antiporter activity, calcium:cation antiporter activity, calcium:hydrogen antiporter activity;P:in 9 processes;C:plant-type vacuole membrane, vacuolar membrane, vacuole;BFOPAMO.I.C.G.H.G.
9.299.137.9At1g61120842405TPS04 (TERPENE SYNTHASE 04)Encodes a geranyllinalool synthase that produces a precursor to TMTT, a volatile plant defense C16-homoterpene. GES transcript levels rise in response to alamethicin, a fungal peptide mixture that damages membranes. This transcriptional response is blocked in JA biosynthetic and JA signaling mutants, but GES transcript levels still rise in response to alamethicin in mutants with salicylic acid and ethylene biosynthetic and/or signaling defects. GES transcripts also accumulate in response to a larval infestation. This enzyme does not localize to the plastids, and it may be present in the cytosol or endoplasmic reticulum.O.I.C.G.H.G.
9.299.113.2At3g49340824096cysteine proteinase, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:unknown;MOPVBAFO.I.C.G.H.G.
9.199.169.9At3g14620820690CYP72A8putative cytochrome P450O.I.C.G.H.G.
9.199.113.2At1g17610838337disease resistance protein-relatedF:transmembrane receptor activity, ATP binding;P:signal transduction, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBOMFO.I.C.G.H.G.
9.199.16.6At4g13810827015AtRLP47 (Receptor Like Protein 47)F:protein binding;P:signal transduction, defense response;C:unknown;PMOBFAVO.I.C.G.H.G.
9.099.1146.1At3g03990819554esterase/lipase/thioesterase family proteinF:catalytic activity;P:unknown;C:unknown;BOPMFAO.I.C.G.H.G.
9.099.136.4At1g59700842261ATGSTU16 (GLUTATHIONE S-TRANSFERASE TAU 16)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
9.099.113.7At5g44820834512unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
8.999.027.2At1g68290843158ENDO 2 (endonuclease 2)Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro.O.I.C.G.H.G.
8.799.0188.4At1g66100842924thionin, putativePredicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.O.I.C.G.H.G.
8.799.0170.2At2g43620818964chitinase, putativeF:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVMO.I.C.G.H.G.
8.799.032.9At2g33530817918scpl46 (serine carboxypeptidase-like 46)F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOBO.I.C.G.H.G.
8.699.038.9At3g59220825091PRN (PIRIN)encodes a cupin-domain containing protein that is similar to pirins which interact with a CCAAT box binding transcription factor. The protein interacts with GPA1 (G protein alpha-subunit) in vitro. Mutants in the gene are affected in germination and early seedling development.O.I.C.G.H.G.
8.699.012.8At4g15700827247glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOBO.I.C.G.H.G.



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