CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM142841

Assay name MG001_ATH1_A22-Torres-7N1

GSE experiment GSE6176: Impact of Type III effectors on plant defense responses

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
76.5 99.9 106.9 At5g47330 834780 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:response to salt stress;C:endomembrane system;MPFO O.I. C.G. H.G.
72.0 99.9 40.4 At5g53710 835452 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
68.9 99.9 123.0 At2g16630 816164 proline-rich family protein F:unknown;P:unknown;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
56.3 99.8 167.0 At1g30250 839905 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
46.8 99.8 56.3 At2g25000 817039 WRKY60 Pathogen-induced transcription factor. Forms protein complexes with itself and with WRKY40. Coexpression with WRKY18 or WRKY40 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. O.I. C.G. H.G.
34.0 99.7 26.0 At5g35480 833512 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
33.9 99.7 131.4 At1g76960 844031 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
32.1 99.7 67.3 At3g28540 822484 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BOMFPAV O.I. C.G. H.G.
26.0 99.7 48.2 At1g56150 842068 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
20.8 99.6 61.1 At2g33480 817913 ANAC041 (Arabidopsis NAC domain containing protein 41) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;PMOF O.I. C.G. H.G.
19.8 99.6 94.8 At1g30260 839906 - F:molecular_function unknown;P:response to cytokinin stimulus;C:unknown;P O.I. C.G. H.G.
19.0 99.5 61.5 At3g47480 823902 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOB O.I. C.G. H.G.
19.0 99.5 51.9 At1g68585 843188 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
19.0 99.5 45.3 At4g01897 828216 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBP O.I. C.G. H.G.
18.5 99.5 72.9 At1g55910 842041 ZIP11 (ZINC TRANSPORTER 11 PRECURSOR) member of Putative zinc transporter ZIP2 - like family O.I. C.G. H.G.
18.2 99.5 54.5 At1g22630 838869 unknown protein F:unknown;P:unknown;C:chloroplast;MPBO O.I. C.G. H.G.
18.2 99.5 18.7 At1g17610 838337 disease resistance protein-related F:transmembrane receptor activity, ATP binding;P:signal transduction, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBOMF O.I. C.G. H.G.
18.1 99.5 18.0 At1g24470 839063 short-chain dehydrogenase/reductase (SDR) family protein Encodes one of the two Arabidopsis homologues to YBR159w encoding a S. cerevisiae beta-ketoacyl reductase (KCR), which catalyzes the first reduction during VLCFA (very long chain fatty acids, >18 carbon) elongation: KCR1 (At1g67730), KCR2 (At1g24470). Complementation of the yeast ybr159Delta mutant demonstrated that the two KCR proteins are divergent and that only AtKCR1 can restore heterologous elongase activity similar to the native yeast KCR gene. O.I. C.G. H.G.
18.0 99.5 97.9 At1g35710 840475 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
18.0 99.5 12.0 At3g26320 822236 CYP71B36 putative cytochrome P450 O.I. C.G. H.G.
17.5 99.5 27.3 At2g29120 817460 ATGLR2.7 member of Putative ligand-gated ion channel subunit family O.I. C.G. H.G.
17.2 99.5 100.1 At4g23140 828413 CRK6 (CYSTEINE-RICH RLK 6) Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) O.I. C.G. H.G.
17.2 99.5 9.1 At4g13810 827015 AtRLP47 (Receptor Like Protein 47) F:protein binding;P:signal transduction, defense response;C:unknown;PMOBFAV O.I. C.G. H.G.
16.9 99.5 41.3 At3g11010 820272 AtRLP34 (Receptor Like Protein 34) F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAV O.I. C.G. H.G.
16.8 99.5 32.8 At2g40670 818662 ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16) response regulator 16 O.I. C.G. H.G.
16.7 99.5 49.8 At5g35490 833513 unknown protein Encodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine. O.I. C.G. H.G.
16.3 99.5 40.4 At4g04540 825785 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
16.2 99.5 23.0 At3g26230 822224 CYP71B24 putative cytochrome P450 O.I. C.G. H.G.
16.0 99.5 58.5 At5g54610 835550 ANK (ankyrin) Induced in response to Salicylic acid. Belongs to the ankyrin repeat protein family. O.I. C.G. H.G.
16.0 99.5 30.0 At4g04500 825780 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
15.7 99.5 39.6 At4g37560 829911 formamidase, putative / formamide amidohydrolase, putative F:formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;P:metabolic process;C:cellular_component unknown;BOFAP O.I. C.G. H.G.
15.7 99.5 15.4 At5g25120 832583 CYP71B11 putative cytochrome P450 O.I. C.G. H.G.
15.6 99.5 189.4 At1g78020 844137 senescence-associated protein-related F:unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
15.6 99.5 6.6 At2g04440 814984 NUDIX/mutT hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;PMOB O.I. C.G. H.G.
15.2 99.4 69.6 At1g68600 843190 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BPFO O.I. C.G. H.G.
14.9 99.4 35.3 At1g53030 841736 cytochrome c oxidase copper chaperone family protein encodes a copper chaperone, can functional complements the yeast COX17 null mutant. May play a role in the delivery of copper to mitochondria. Expressed in roots and thus may also play a role in copper transport in the roots. O.I. C.G. H.G.
14.7 99.4 107.4 At3g51860 824349 CAX3 (CATION EXCHANGER 3) F:cation:cation antiporter activity, calcium:cation antiporter activity, calcium:hydrogen antiporter activity;P:in 9 processes;C:plant-type vacuole membrane, vacuolar membrane, vacuole;BFOPAM O.I. C.G. H.G.
14.6 99.4 104.2 At3g11660 820338 NHL1 encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus. Localization of the gene product is similar to that of NHL3 (plasma membrane) but it is yet inconclusive. O.I. C.G. H.G.
14.3 99.4 37.9 At4g05590 825927 unknown protein F:unknown;P:biological_process unknown;C:mitochondrion;MFPO O.I. C.G. H.G.
13.9 99.4 130.9 At1g68520 843181 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POMF O.I. C.G. H.G.
13.5 99.4 21.7 At3g45290 823667 MLO3 (MILDEW RESISTANCE LOCUS O 3) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO3 belongs to the clade IV, with AtMLO2, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in primary root and lateral root primordia, in fruit abscission zone, in vascular system of cotyledons and in trichomes of young leaves,; it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). O.I. C.G. H.G.
13.4 99.4 183.0 At2g43570 818959 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMV O.I. C.G. H.G.
13.4 99.4 12.6 At4g14610 3770075 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
13.3 99.4 24.1 At3g23110 821886 AtRLP37 (Receptor Like Protein 37) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
13.2 99.4 67.0 At5g65870 836716 ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR) Probable phytosulfokines 5 precursor, coding for a unique plant peptide growth factor. O.I. C.G. H.G.
13.0 99.4 22.8 At1g17090 838279 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
12.9 99.3 23.7 At2g36590 818232 ProT3 (PROLINE TRANSPORTER 3) Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed in leaves, flowers and siliques but to a much lesser extent in roots. O.I. C.G. H.G.
12.8 99.3 35.0 At3g48720 824033 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
12.8 99.3 12.9 At3g08870 820035 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
12.7 99.3 155.6 At2g21970 816733 SEP2 (STRESS ENHANCED PROTEIN 2) stress enhanced protein 2 (SEP2) chlorophyll a/b-binding protein O.I. C.G. H.G.
12.7 99.3 88.1 At1g31170 840004 SRX (SULFIREDOXIN) encodes a cysteine-sulfinic acid reductase (sulfiredoxin - EC 1.8.98.2) capable of reducing overoxidized plastidic 2-Cys-Prx involved in peroxide detoxification and response to oxidative stress O.I. C.G. H.G.
12.6 99.3 102.2 At2g15050 815994 LTP Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
12.6 99.3 50.5 At3g60540 825225 sec61beta family protein F:protein transporter activity;P:protein transport;C:unknown;MFPO O.I. C.G. H.G.
12.5 99.3 55.5 At1g78290 844164 - - O.I. C.G. H.G.
12.5 99.3 13.9 At5g41900 834195 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
12.3 99.3 49.9 At4g11890 826796 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
12.2 99.3 58.1 At3g45050 823640 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
12.2 99.3 12.5 At5g36930 833662 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV O.I. C.G. H.G.
11.8 99.3 92.0 At3g45860 823729 receptor-like protein kinase, putative F:kinase activity;P:defense response;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
11.8 99.3 65.8 At1g77930 844128 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV O.I. C.G. H.G.
11.7 99.3 25.4 At1g64380 842745 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. O.I. C.G. H.G.
11.5 99.3 117.0 At1g11530 837696 ATCXXS1 (C-terminal cysteine residue is changed to a serine 1) Encodes a monocysteinic thioredoxin, thioredoxin in which the second cysteine of the redox site is replaced by a serine, with low disulfide reductase but efficient disulfide isomerase activity. O.I. C.G. H.G.
11.5 99.3 28.8 At4g09350 826517 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV O.I. C.G. H.G.
11.5 99.3 4.4 At2g30760 817627 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
11.4 99.3 82.2 At1g07440 837256 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
11.3 99.3 22.7 At3g05340 819698 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF O.I. C.G. H.G.
11.3 99.3 11.1 At4g11900 826797 S-locus lectin protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;PMOFBV O.I. C.G. H.G.
11.2 99.2 59.0 At2g17040 816209 anac036 (Arabidopsis NAC domain containing protein 36) F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;P O.I. C.G. H.G.
11.1 99.2 35.3 At5g54250 835513 ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4) member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent. O.I. C.G. H.G.
11.1 99.2 21.3 At3g28080 822432 nodulin MtN21 family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PBOAM O.I. C.G. H.G.
11.0 99.2 13.7 At5g43860 834408 ATCLH2 Encodes a chlorophyllase, the first enzyme in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to chlorophyllide and phytol. AtCLH2 has a typical signal sequence for the chloroplast. Gene expression does not respond to methyljasmonate, a known promoter of senescence and chlorophyll degradation. O.I. C.G. H.G.
10.9 99.2 143.2 At2g01670 814696 atnudt17 (Arabidopsis thaliana Nudix hydrolase homolog 17) F:hydrolase activity;P:biological_process unknown;C:unknown;MBPOF O.I. C.G. H.G.
10.9 99.2 59.4 At1g66820 843000 glycine-rich protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;MPOBVFA O.I. C.G. H.G.
10.8 99.2 54.7 At4g10920 826690 KELP Transcriptional co-activator. Forms homodimers or heterodimers with the kiwi protein. Both proteins are involved in gene activation during pathogen defense and plant development. O.I. C.G. H.G.
10.7 99.2 32.4 At1g32520 840146 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPO O.I. C.G. H.G.
10.6 99.2 149.7 At4g14400 827085 ACD6 (ACCELERATED CELL DEATH 6) encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae. O.I. C.G. H.G.
10.6 99.2 36.2 At2g33530 817918 scpl46 (serine carboxypeptidase-like 46) F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOB O.I. C.G. H.G.
10.6 99.2 18.8 At4g02075 828146 PIT1 (pitchoun 1) F:protein binding, zinc ion binding;P:unknown;C:plasma membrane;MPOFV O.I. C.G. H.G.
10.5 99.2 88.7 At5g06530 830541 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:plasma membrane;BOMFAPV O.I. C.G. H.G.
10.5 99.2 77.9 At3g03640 821201 BGLU25 (BETA GLUCOSIDASE 25) Encodes beta-glucosidase (GLUC). O.I. C.G. H.G.
10.5 99.2 40.3 At1g64400 842748 long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative F:catalytic activity;P:fatty acid biosynthetic process;C:unknown;BOMFPAV O.I. C.G. H.G.
10.4 99.2 94.0 At2g18230 816338 AtPPa2 (Arabidopsis thaliana pyrophosphorylase 2) Encodes a protein that might have inorganic pyrophosphatase activity. O.I. C.G. H.G.
10.3 99.2 123.7 At1g21770 838781 - F:molecular_function unknown;P:biological_process unknown;C:peroxisome;BPOAM O.I. C.G. H.G.
10.3 99.2 36.2 At2g01870 814718 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P O.I. C.G. H.G.
10.3 99.2 32.4 At5g60900 836211 RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1) Encodes a receptor-like protein kinase. O.I. C.G. H.G.
10.2 99.2 75.2 At2g15580 816051 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFBV O.I. C.G. H.G.
10.2 99.2 59.9 At3g27050 822323 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
10.1 99.2 52.7 At1g26560 839196 BGLU40 (BETA GLUCOSIDASE 40) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:apoplast, chloroplast;BOPMFA O.I. C.G. H.G.
10.1 99.2 36.8 At2g41940 818794 ZFP8 (ZINC FINGER PROTEIN 8) Encodes a zinc finger protein containing only a single zinc finger. O.I. C.G. H.G.
10.0 99.2 69.6 At1g52590 841691 - F:molecular_function unknown;P:biological_process unknown;C:plastoglobule;BOP O.I. C.G. H.G.
10.0 99.2 42.1 At2g32680 817828 AtRLP23 (Receptor Like Protein 23) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
10.0 99.2 29.2 At1g16510 838221 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
10.0 99.2 14.9 At3g07520 819940 GLR1.4 (GLUTAMATE RECEPTOR 1.4) member of Putative ligand-gated ion channel subunit family. Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis. O.I. C.G. H.G.
9.9 99.1 169.0 At4g21620 828249 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
9.9 99.1 51.3 At4g30993 829225 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
9.9 99.1 10.5 At2g32290 817789 BAM6 (BETA-AMYLASE 6) F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO O.I. C.G. H.G.
9.7 99.1 150.8 At5g24530 832524 DMR6 (DOWNY MILDEW RESISTANT 6) Encodes a putative 2OG-Fe(II) oxygenase that is defense-associated but required for susceptibility to downy mildew. O.I. C.G. H.G.
9.7 99.1 55.6 At2g46430 819251 ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3) cyclic nucleotide gated channel (CNGC4), downstream component of the signaling pathways leading to HR/resistance O.I. C.G. H.G.
9.6 99.1 31.1 At5g38895 833881 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to chitin;C:unknown;MPOFV O.I. C.G. H.G.
9.5 99.1 40.3 At3g50770 824241 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:chloroplast;MFPOB O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
76.5	99.9	106.9	At5g47330	834780	palmitoyl protein thioesterase family protein	F:palmitoyl-(protein) hydrolase activity;P:response to salt stress;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
72.0	99.9	40.4	At5g53710	835452	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
68.9	99.9	123.0	At2g16630	816164	proline-rich family protein	F:unknown;P:unknown;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
56.3	99.8	167.0	At1g30250	839905	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
46.8	99.8	56.3	At2g25000	817039	WRKY60	Pathogen-induced transcription factor. Forms protein complexes with itself and with WRKY40. Coexpression with WRKY18 or WRKY40 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.	O.I.	C.G.	H.G.
34.0	99.7	26.0	At5g35480	833512	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
33.9	99.7	131.4	At1g76960	844031	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
32.1	99.7	67.3	At3g28540	822484	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
26.0	99.7	48.2	At1g56150	842068	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
20.8	99.6	61.1	At2g33480	817913	ANAC041 (Arabidopsis NAC domain containing protein 41)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;PMOF	O.I.	C.G.	H.G.
19.8	99.6	94.8	At1g30260	839906	-	F:molecular_function unknown;P:response to cytokinin stimulus;C:unknown;P	O.I.	C.G.	H.G.
19.0	99.5	61.5	At3g47480	823902	calcium-binding EF hand family protein	F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOB	O.I.	C.G.	H.G.
19.0	99.5	51.9	At1g68585	843188	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.0	99.5	45.3	At4g01897	828216	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBP	O.I.	C.G.	H.G.
18.5	99.5	72.9	At1g55910	842041	ZIP11 (ZINC TRANSPORTER 11 PRECURSOR)	member of Putative zinc transporter ZIP2 - like family	O.I.	C.G.	H.G.
18.2	99.5	54.5	At1g22630	838869	unknown protein	F:unknown;P:unknown;C:chloroplast;MPBO	O.I.	C.G.	H.G.
18.2	99.5	18.7	At1g17610	838337	disease resistance protein-related	F:transmembrane receptor activity, ATP binding;P:signal transduction, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBOMF	O.I.	C.G.	H.G.
18.1	99.5	18.0	At1g24470	839063	short-chain dehydrogenase/reductase (SDR) family protein	Encodes one of the two Arabidopsis homologues to YBR159w encoding a S. cerevisiae beta-ketoacyl reductase (KCR), which catalyzes the first reduction during VLCFA (very long chain fatty acids, >18 carbon) elongation: KCR1 (At1g67730), KCR2 (At1g24470). Complementation of the yeast ybr159Delta mutant demonstrated that the two KCR proteins are divergent and that only AtKCR1 can restore heterologous elongase activity similar to the native yeast KCR gene.	O.I.	C.G.	H.G.
18.0	99.5	97.9	At1g35710	840475	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
18.0	99.5	12.0	At3g26320	822236	CYP71B36	putative cytochrome P450	O.I.	C.G.	H.G.
17.5	99.5	27.3	At2g29120	817460	ATGLR2.7	member of Putative ligand-gated ion channel subunit family	O.I.	C.G.	H.G.
17.2	99.5	100.1	At4g23140	828413	CRK6 (CYSTEINE-RICH RLK 6)	Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)	O.I.	C.G.	H.G.
17.2	99.5	9.1	At4g13810	827015	AtRLP47 (Receptor Like Protein 47)	F:protein binding;P:signal transduction, defense response;C:unknown;PMOBFAV	O.I.	C.G.	H.G.
16.9	99.5	41.3	At3g11010	820272	AtRLP34 (Receptor Like Protein 34)	F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAV	O.I.	C.G.	H.G.
16.8	99.5	32.8	At2g40670	818662	ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16)	response regulator 16	O.I.	C.G.	H.G.
16.7	99.5	49.8	At5g35490	833513	unknown protein	Encodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine.	O.I.	C.G.	H.G.
16.3	99.5	40.4	At4g04540	825785	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
16.2	99.5	23.0	At3g26230	822224	CYP71B24	putative cytochrome P450	O.I.	C.G.	H.G.
16.0	99.5	58.5	At5g54610	835550	ANK (ankyrin)	Induced in response to Salicylic acid. Belongs to the ankyrin repeat protein family.	O.I.	C.G.	H.G.
16.0	99.5	30.0	At4g04500	825780	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
15.7	99.5	39.6	At4g37560	829911	formamidase, putative / formamide amidohydrolase, putative	F:formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;P:metabolic process;C:cellular_component unknown;BOFAP	O.I.	C.G.	H.G.
15.7	99.5	15.4	At5g25120	832583	CYP71B11	putative cytochrome P450	O.I.	C.G.	H.G.
15.6	99.5	189.4	At1g78020	844137	senescence-associated protein-related	F:unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
15.6	99.5	6.6	At2g04440	814984	NUDIX/mutT hydrolase family protein	F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;PMOB	O.I.	C.G.	H.G.
15.2	99.4	69.6	At1g68600	843190	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;BPFO	O.I.	C.G.	H.G.
14.9	99.4	35.3	At1g53030	841736	cytochrome c oxidase copper chaperone family protein	encodes a copper chaperone, can functional complements the yeast COX17 null mutant. May play a role in the delivery of copper to mitochondria. Expressed in roots and thus may also play a role in copper transport in the roots.	O.I.	C.G.	H.G.
14.7	99.4	107.4	At3g51860	824349	CAX3 (CATION EXCHANGER 3)	F:cation:cation antiporter activity, calcium:cation antiporter activity, calcium:hydrogen antiporter activity;P:in 9 processes;C:plant-type vacuole membrane, vacuolar membrane, vacuole;BFOPAM	O.I.	C.G.	H.G.
14.6	99.4	104.2	At3g11660	820338	NHL1	encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus. Localization of the gene product is similar to that of NHL3 (plasma membrane) but it is yet inconclusive.	O.I.	C.G.	H.G.
14.3	99.4	37.9	At4g05590	825927	unknown protein	F:unknown;P:biological_process unknown;C:mitochondrion;MFPO	O.I.	C.G.	H.G.
13.9	99.4	130.9	At1g68520	843181	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POMF	O.I.	C.G.	H.G.
13.5	99.4	21.7	At3g45290	823667	MLO3 (MILDEW RESISTANCE LOCUS O 3)	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO3 belongs to the clade IV, with AtMLO2, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in primary root and lateral root primordia, in fruit abscission zone, in vascular system of cotyledons and in trichomes of young leaves,; it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	O.I.	C.G.	H.G.
13.4	99.4	183.0	At2g43570	818959	chitinase, putative	F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMV	O.I.	C.G.	H.G.
13.4	99.4	12.6	At4g14610	3770075	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
13.3	99.4	24.1	At3g23110	821886	AtRLP37 (Receptor Like Protein 37)	F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
13.2	99.4	67.0	At5g65870	836716	ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR)	Probable phytosulfokines 5 precursor, coding for a unique plant peptide growth factor.	O.I.	C.G.	H.G.
13.0	99.4	22.8	At1g17090	838279	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
12.9	99.3	23.7	At2g36590	818232	ProT3 (PROLINE TRANSPORTER 3)	Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed in leaves, flowers and siliques but to a much lesser extent in roots.	O.I.	C.G.	H.G.
12.8	99.3	35.0	At3g48720	824033	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
12.8	99.3	12.9	At3g08870	820035	lectin protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
12.7	99.3	155.6	At2g21970	816733	SEP2 (STRESS ENHANCED PROTEIN 2)	stress enhanced protein 2 (SEP2) chlorophyll a/b-binding protein	O.I.	C.G.	H.G.
12.7	99.3	88.1	At1g31170	840004	SRX (SULFIREDOXIN)	encodes a cysteine-sulfinic acid reductase (sulfiredoxin - EC 1.8.98.2) capable of reducing overoxidized plastidic 2-Cys-Prx involved in peroxide detoxification and response to oxidative stress	O.I.	C.G.	H.G.
12.6	99.3	102.2	At2g15050	815994	LTP	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
12.6	99.3	50.5	At3g60540	825225	sec61beta family protein	F:protein transporter activity;P:protein transport;C:unknown;MFPO	O.I.	C.G.	H.G.
12.5	99.3	55.5	At1g78290	844164	-	-	O.I.	C.G.	H.G.
12.5	99.3	13.9	At5g41900	834195	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
12.3	99.3	49.9	At4g11890	826796	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
12.2	99.3	58.1	At3g45050	823640	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
12.2	99.3	12.5	At5g36930	833662	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV	O.I.	C.G.	H.G.
11.8	99.3	92.0	At3g45860	823729	receptor-like protein kinase, putative	F:kinase activity;P:defense response;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
11.8	99.3	65.8	At1g77930	844128	DNAJ heat shock N-terminal domain-containing protein	F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV	O.I.	C.G.	H.G.
11.7	99.3	25.4	At1g64380	842745	AP2 domain-containing transcription factor, putative	encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.	O.I.	C.G.	H.G.
11.5	99.3	117.0	At1g11530	837696	ATCXXS1 (C-terminal cysteine residue is changed to a serine 1)	Encodes a monocysteinic thioredoxin, thioredoxin in which the second cysteine of the redox site is replaced by a serine, with low disulfide reductase but efficient disulfide isomerase activity.	O.I.	C.G.	H.G.
11.5	99.3	28.8	At4g09350	826517	DNAJ heat shock N-terminal domain-containing protein	F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV	O.I.	C.G.	H.G.
11.5	99.3	4.4	At2g30760	817627	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.4	99.3	82.2	At1g07440	837256	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
11.3	99.3	22.7	At3g05340	819698	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF	O.I.	C.G.	H.G.
11.3	99.3	11.1	At4g11900	826797	S-locus lectin protein kinase family protein	F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;PMOFBV	O.I.	C.G.	H.G.
11.2	99.2	59.0	At2g17040	816209	anac036 (Arabidopsis NAC domain containing protein 36)	F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.1	99.2	35.3	At5g54250	835513	ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4)	member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent.	O.I.	C.G.	H.G.
11.1	99.2	21.3	At3g28080	822432	nodulin MtN21 family protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;PBOAM	O.I.	C.G.	H.G.
11.0	99.2	13.7	At5g43860	834408	ATCLH2	Encodes a chlorophyllase, the first enzyme in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to chlorophyllide and phytol. AtCLH2 has a typical signal sequence for the chloroplast. Gene expression does not respond to methyljasmonate, a known promoter of senescence and chlorophyll degradation.	O.I.	C.G.	H.G.
10.9	99.2	143.2	At2g01670	814696	atnudt17 (Arabidopsis thaliana Nudix hydrolase homolog 17)	F:hydrolase activity;P:biological_process unknown;C:unknown;MBPOF	O.I.	C.G.	H.G.
10.9	99.2	59.4	At1g66820	843000	glycine-rich protein	F:molecular_function unknown;P:unknown;C:cellular_component unknown;MPOBVFA	O.I.	C.G.	H.G.
10.8	99.2	54.7	At4g10920	826690	KELP	Transcriptional co-activator. Forms homodimers or heterodimers with the kiwi protein. Both proteins are involved in gene activation during pathogen defense and plant development.	O.I.	C.G.	H.G.
10.7	99.2	32.4	At1g32520	840146	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPO	O.I.	C.G.	H.G.
10.6	99.2	149.7	At4g14400	827085	ACD6 (ACCELERATED CELL DEATH 6)	encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae.	O.I.	C.G.	H.G.
10.6	99.2	36.2	At2g33530	817918	scpl46 (serine carboxypeptidase-like 46)	F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOB	O.I.	C.G.	H.G.
10.6	99.2	18.8	At4g02075	828146	PIT1 (pitchoun 1)	F:protein binding, zinc ion binding;P:unknown;C:plasma membrane;MPOFV	O.I.	C.G.	H.G.
10.5	99.2	88.7	At5g06530	830541	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:plasma membrane;BOMFAPV	O.I.	C.G.	H.G.
10.5	99.2	77.9	At3g03640	821201	BGLU25 (BETA GLUCOSIDASE 25)	Encodes beta-glucosidase (GLUC).	O.I.	C.G.	H.G.
10.5	99.2	40.3	At1g64400	842748	long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative	F:catalytic activity;P:fatty acid biosynthetic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
10.4	99.2	94.0	At2g18230	816338	AtPPa2 (Arabidopsis thaliana pyrophosphorylase 2)	Encodes a protein that might have inorganic pyrophosphatase activity.	O.I.	C.G.	H.G.
10.3	99.2	123.7	At1g21770	838781	-	F:molecular_function unknown;P:biological_process unknown;C:peroxisome;BPOAM	O.I.	C.G.	H.G.
10.3	99.2	36.2	At2g01870	814718	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P	O.I.	C.G.	H.G.
10.3	99.2	32.4	At5g60900	836211	RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1)	Encodes a receptor-like protein kinase.	O.I.	C.G.	H.G.
10.2	99.2	75.2	At2g15580	816051	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFBV	O.I.	C.G.	H.G.
10.2	99.2	59.9	At3g27050	822323	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
10.1	99.2	52.7	At1g26560	839196	BGLU40 (BETA GLUCOSIDASE 40)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:apoplast, chloroplast;BOPMFA	O.I.	C.G.	H.G.
10.1	99.2	36.8	At2g41940	818794	ZFP8 (ZINC FINGER PROTEIN 8)	Encodes a zinc finger protein containing only a single zinc finger.	O.I.	C.G.	H.G.
10.0	99.2	69.6	At1g52590	841691	-	F:molecular_function unknown;P:biological_process unknown;C:plastoglobule;BOP	O.I.	C.G.	H.G.
10.0	99.2	42.1	At2g32680	817828	AtRLP23 (Receptor Like Protein 23)	F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
10.0	99.2	29.2	At1g16510	838221	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
10.0	99.2	14.9	At3g07520	819940	GLR1.4 (GLUTAMATE RECEPTOR 1.4)	member of Putative ligand-gated ion channel subunit family. Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis.	O.I.	C.G.	H.G.
9.9	99.1	169.0	At4g21620	828249	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
9.9	99.1	51.3	At4g30993	829225	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
9.9	99.1	10.5	At2g32290	817789	BAM6 (BETA-AMYLASE 6)	F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO	O.I.	C.G.	H.G.
9.7	99.1	150.8	At5g24530	832524	DMR6 (DOWNY MILDEW RESISTANT 6)	Encodes a putative 2OG-Fe(II) oxygenase that is defense-associated but required for susceptibility to downy mildew.	O.I.	C.G.	H.G.
9.7	99.1	55.6	At2g46430	819251	ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3)	cyclic nucleotide gated channel (CNGC4), downstream component of the signaling pathways leading to HR/resistance	O.I.	C.G.	H.G.
9.6	99.1	31.1	At5g38895	833881	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:response to chitin;C:unknown;MPOFV	O.I.	C.G.	H.G.
9.5	99.1	40.3	At3g50770	824241	calmodulin-related protein, putative	F:calcium ion binding;P:biological_process unknown;C:chloroplast;MFPOB	O.I.	C.G.	H.G.

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GSM ID	GSM142841
Assay name	MG001_ATH1_A22-Torres-7N1
GSE experiment	GSE6176: Impact of Type III effectors on plant defense responses

Microarray experiments to specifically-expressed genes

GSM ID GSM142841 Assay name MG001_ATH1_A22-Torres-7N1 GSE experiment GSE6176: Impact of Type III effectors on plant defense responses

GSM ID GSM142841

Assay name MG001_ATH1_A22-Torres-7N1

GSE experiment GSE6176: Impact of Type III effectors on plant defense responses