Microarray experiments to specifically-expressed genes

GSM ID GSM142819
Assay name SS002_ATH1_A11-smith-24h_repeat
GSE experiment GSE6174: Gene expression and carbohydrate metabolism through the diurnal cycle

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
47.999.823.0At2g32290817789BAM6 (BETA-AMYLASE 6)F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBOO.I.C.G.H.G.
45.099.851.4At5g59670836088leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
35.299.7105.8At1g68600843190unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BPFOO.I.C.G.H.G.
34.599.753.5At5g58310835943MES18 (METHYL ESTERASE 18)Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
29.099.7308.0At2g26020817143PDF1.2b (plant defensin 1.2b)Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
27.899.7241.9At4g14400827085ACD6 (ACCELERATED CELL DEATH 6)encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae.O.I.C.G.H.G.
25.099.632.0At3g28080822432nodulin MtN21 family proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PBOAMO.I.C.G.H.G.
21.499.6101.0At2g40080818596ELF4 (EARLY FLOWERING 4)Encodes a novel nuclear 111 amino-acid phytochrome-regulated component of a negative feedback loop involving the circadian clock central oscillator components CCA1 and LHY. ELF4 is necessary for light-induced expression of both CCA1 and LHY, and conversely, CCA1 and LHY act negatively on light-induced ELF4 expression. ELF4 promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. It is involved in the phyB-mediated constant red light induced seedling de-etiolation process and may function to coregulate the expression of a subset of phyB-regulated genes.O.I.C.G.H.G.
21.299.6116.9At5g63180836439pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:unknown;BPFOO.I.C.G.H.G.
19.999.647.4At1g07050837216CONSTANS-like protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFO.I.C.G.H.G.
18.999.5242.8At5g44420834469PDF1.2Encodes an ethylene- and jasmonate-responsive plant defensin. mRNA levels are not responsive to salicylic acid treatment; although jasmonate and salicylic acid can act synergistically to enhance the expression of this gene. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
18.999.5116.5At3g45860823729receptor-like protein kinase, putativeF:kinase activity;P:defense response;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
18.999.533.5At5g60100836132APRR3 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 3)Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL.O.I.C.G.H.G.
18.699.59.5At4g13810827015AtRLP47 (Receptor Like Protein 47)F:protein binding;P:signal transduction, defense response;C:unknown;PMOBFAVO.I.C.G.H.G.
18.299.5103.9At1g07440837256tropinone reductase, putative / tropine dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
16.999.594.2At4g12310826840CYP706A5member of CYP706AO.I.C.G.H.G.
16.799.541.0At3g11010820272AtRLP34 (Receptor Like Protein 34)F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAVO.I.C.G.H.G.
16.399.588.2At3g55630824729ATDFD (A. THALIANA DHFS-FPGS HOMOLOG D)F:tetrahydrofolylpolyglutamate synthase activity;P:one-carbon compound metabolic process;C:cytosol;BOFMPAO.I.C.G.H.G.
15.599.515.9At5g43740834394disease resistance protein (CC-NBS-LRR class), putativeF:protein binding, ATP binding;P:defense response, apoptosis;C:endomembrane system;PMBOFAO.I.C.G.H.G.
15.399.4141.8At5g23240832388DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAVO.I.C.G.H.G.
15.399.470.0At2g46430819251ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3)cyclic nucleotide gated channel (CNGC4), downstream component of the signaling pathways leading to HR/resistanceO.I.C.G.H.G.
15.299.4180.1At2g40100818599LHCB4.3 (light harvesting complex PSII)Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem IIO.I.C.G.H.G.
14.999.440.9At5g54250835513ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4)member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent.O.I.C.G.H.G.
14.599.425.0At1g66980843016protein kinase family protein / glycerophosphoryl diester phosphodiesterase family proteinF:kinase activity, glycerophosphodiester phosphodiesterase activity;P:protein amino acid phosphorylation, glycerol metabolic process, lipid metabolic process;C:unknown;MPOBFVAO.I.C.G.H.G.
13.399.441.7At2g21650816703MEE3 (MATERNAL EFFECT EMBRYO ARREST 3)F:transcription factor activity, DNA binding;P:embryonic development ending in seed dormancy, regulation of transcription, DNA-dependent;C:unknown;PMOO.I.C.G.H.G.
12.499.328.3At1g80940844434unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
12.399.3142.8At1g29395839815COR414-TM1encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.O.I.C.G.H.G.
12.399.384.0At3g28290822455AT14AEncodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed.O.I.C.G.H.G.
12.199.365.1At3g20810821629transcription factor jumonji (jmjC) domain-containing proteinF:transcription factor activity;P:biological_process unknown;C:cellular_component unknown;MBOFPVO.I.C.G.H.G.
12.199.316.3At3g58070824976GIS (GLABROUS INFLORESCENCE STEMS)Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenileľadult leaf transition and inducing the formation of rosette leaves on inflorescence stems.O.I.C.G.H.G.
12.099.3119.9At5g63780836498SHA1 (shoot apical meristem arrest 1)Encodes SHA1 (shoot apical meristem arrest), a putative E3 ligase (a RING finger protein) required for post-embryonic SAM maintenance. The mutant sha1-1 shows a primary SAM-deficient phenotype at the adult stage.O.I.C.G.H.G.
12.099.384.3At4g10120826603ATSPS4FEncodes a protein with putative sucrose-phosphate synthase activity.O.I.C.G.H.G.
12.099.329.0At5g48730834931pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBAO.I.C.G.H.G. efflux carrier family proteinF:auxin:hydrogen symporter activity;P:auxin polar transport;C:endomembrane system, integral to membrane;PFOO.I.C.G.H.G.
11.899.3112.6At5g26570832706ATGWD3chloroplastidic phosphoglucan, water dikinase (PWD) which is required for normal degradation of leaf starch in Arabidopsis. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C3 position.O.I.C.G.H.G.
11.899.343.7At1g53230841756TCP3Encodes a member of a recently identified plant transcription factor family that includes Teosinte branched 1, Cycloidea 1, and proliferating cell nuclear antigen (PCNA) factors, PCF1 and 2. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation.O.I.C.G.H.G.
11.699.382.2At4g23140828413CRK6 (CYSTEINE-RICH RLK 6)Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)O.I.C.G.H.G.
11.699.355.1At1g21270838723WAK2cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase.O.I.C.G.H.G.
11.499.374.8At4g09020826481ISA3 (ISOAMYLASE 3)Encodes an isoamylase-like protein. Mutant studies show that the gene is strongly involved in starch breakdown. A GUS-protein fusion product was shown to localize to the surface of chloroplastic structures reminiscent of starch granules. In the mutants, the chloroplastic α-amylase AMY3 is upregulated.O.I.C.G.H.G.
11.399.349.1At5g54610835550ANK (ankyrin)Induced in response to Salicylic acid. Belongs to the ankyrin repeat protein family.O.I.C.G.H.G. (recognition of peronospora parasitica 1)Encodes a TIR-NB-LRR R-protein RPP1 that confers resistance to Peronospora parasitica (downy mildew).O.I.C.G.H.G.
11.199.2208.4At3g25690822157CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1)actin binding protein required for normal chloroplast positioningO.I.C.G.H.G. (UDP-GLUCOSYL TRANSFERASE 71B1)F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVFO.I.C.G.H.G. transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOFO.I.C.G.H.G. a cyclin-dependent kinase inhibitor protein that functions as a negative regulator of cell division and promoter of endoreduplication. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Both SKP2b and RKP appear to be involved in the degradation of KRP1.O.I.C.G.H.G.
10.999.245.6At2g03550814884hydrolaseF:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAVO.I.C.G.H.G.
10.999.216.2At4g04750825811carbohydrate transmembrane transporter/ sugar:hydrogen symporterF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOAO.I.C.G.H.G.
10.899.259.5At4g00490827959BAM2 (BETA-AMYLASE 2)Encodes a chloroplast beta-amylase. The enzyme activity is very weak compared to BAM1 and BAM3. Mutant of BAM2 has no visible phenotype.O.I.C.G.H.G.
10.899.237.1At2g01870814718unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO.I.C.G.H.G.
10.799.229.5At4g23260828425ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:response to abscisic acid stimulus;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
10.699.2171.5At1g19960838585-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBO.I.C.G.H.G.
10.599.250.3At1g03310839531isoamylase, putative / starch debranching enzyme, putativeEncodes a protein with strong similarity to isoamylase (EC: however lacks critical residues known to be important for activity. Appears to co localize with ISA1 in the chloroplast isoamylase complex. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. It has been postulated that AtISA2 interacts with AtISA1 to form the Iso1 complex.O.I.C.G.H.G.
10.599.233.8At5g20935832218unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;BPOO.I.C.G.H.G.
10.599.232.4At4g04540825785protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
10.599.216.2At5g53020835381unknown proteinF:unknown;P:biological_process unknown;C:unknown;MOBFPAVO.I.C.G.H.G. (CHLORORESPIRATORY REDUCTION 7)Encodes a protein of the chloroplastic NAD(P)H dehydrogenase complex (NDH Complex) involved in respiration, photosystem I (PSI) cyclic electron transport and CO2 uptake. The product of this gene appears to be essential for the stable formation of the NDH Complex.O.I.C.G.H.G. family proteinsimilar to ABC1 family protein, contains InterPro domain ABC1 protein (InterPro:IPR004147)O.I.C.G.H.G.
10.099.2234.6At1g49750841398leucine-rich repeat family proteinF:protein binding;P:unknown;C:chloroplast;MPBOFVAO.I.C.G.H.G. cytochrome P450O.I.C.G.H.G. (Receptor Like Protein 37)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
9.999.181.7At4g01080827902unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
9.999.131.8At5g60900836211RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1)Encodes a receptor-like protein kinase.O.I.C.G.H.G.
9.999.128.6At1g15410838111aspartate-glutamate racemase familyF:racemase and epimerase activity, acting on amino acids and derivatives;P:amino acid metabolic process, metabolic process;C:chloroplast;BOAPFO.I.C.G.H.G.
9.899.135.6At5g13730831218SIG4 (SIGMA FACTOR 4)Encodes sigma 4 factor, involved in regulating the activity of the plastid-encoded RNA polymerase PEP. Regulates the overall quantity of NDH complexes and thus influences NDH activity.O.I.C.G.H.G.
9.799.175.2At1g65190842826protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVO.I.C.G.H.G.
9.699.136.3At4g12830826895hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:chloroplast;BOMPFAO.I.C.G.H.G.
9.699.123.3At1g79110844252protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVFO.I.C.G.H.G.
9.699.112.0At5g44410834467FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAMO.I.C.G.H.G.
9.599.113.1At4g23130828412CRK5 (CYSTEINE-RICH RLK5)Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)O.I.C.G.H.G.
9.499.1172.7At2g43530818954trypsin inhibitor, putativeEncodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
9.399.149.4At3g01440821143oxygen evolving enhancer 3 (PsbQ) family proteinF:calcium ion binding;P:photosynthesis, light reaction;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast, oxygen evolving complex;PO.I.C.G.H.G.
9.299.1239.9At4g30650829188hydrophobic protein, putative / low temperature and salt responsive protein, putativeF:unknown;P:response to salt stress, hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;BFPMOO.I.C.G.H.G.
9.299.1226.3At3g46970823850PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2)Encodes a cytosolic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for branched polysaccharides, such as glycogen.O.I.C.G.H.G. activity;P:metabolic process;C:cellular_component unknown;BOPMAFO.I.C.G.H.G. kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system, integral to membrane;MPOBFVAO.I.C.G.H.G. family proteinF:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast, plastoglobule;OBMPFAVO.I.C.G.H.G. proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G. (A. THALIANA RECEPTOR KINASE 1)An alternatively spliced gene that encodes a functional transmembrane receptor serine/threonine kinase, alternate form may not have transmembrane domain.O.I.C.G.H.G. NPH3 family proteinF:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;PO.I.C.G.H.G.
8.699.08.7At1g17665838343unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OPMFO.I.C.G.H.G.

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