CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM142814

Assay name SS002_ATH1_A6-smith-12h

GSE experiment GSE6174: Gene expression and carbohydrate metabolism through the diurnal cycle

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
74.9 99.9 217.5 At3g02380 821298 COL2 (constans-like 2) homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins O.I. C.G. H.G.
64.8 99.8 61.6 At1g49200 841343 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
62.6 99.8 49.0 At1g29720 839850 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
44.4 99.8 83.2 At5g17300 831595 myb family transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;PMOFVB O.I. C.G. H.G.
41.5 99.8 28.4 At3g15310 820762 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
37.5 99.7 141.1 At2g41250 818724 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:mitochondrion;BOMAPF O.I. C.G. H.G.
34.5 99.7 41.8 At5g22390 832300 unknown protein F:unknown;P:unknown;C:unknown;PMOF O.I. C.G. H.G.
34.0 99.7 68.8 At1g64500 842758 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF O.I. C.G. H.G.
33.9 99.7 42.3 At5g39660 833962 CDF2 (CYCLING DOF FACTOR 2) Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions. O.I. C.G. H.G.
32.6 99.7 69.5 At5g35490 833513 unknown protein Encodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine. O.I. C.G. H.G.
31.7 99.7 244.3 At1g01060 839341 LHY (LATE ELONGATED HYPOCOTYL) LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 O.I. C.G. H.G.
29.8 99.7 11.3 At5g04190 830297 PKS4 (phytochrome kinase substrate 4) Encodes phytochrome kinase substrate 4, a phytochrome signaling component involved in phototropism. O.I. C.G. H.G.
28.7 99.7 61.1 At2g21650 816703 MEE3 (MATERNAL EFFECT EMBRYO ARREST 3) F:transcription factor activity, DNA binding;P:embryonic development ending in seed dormancy, regulation of transcription, DNA-dependent;C:unknown;PMO O.I. C.G. H.G.
25.0 99.6 119.3 At2g46830 819296 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. O.I. C.G. H.G.
23.0 99.6 96.0 At5g15850 831442 COL1 (constans-like 1) Homologous to the flowering-time gene CONSTANS. O.I. C.G. H.G.
22.7 99.6 74.7 At1g78290 844164 - - O.I. C.G. H.G.
21.1 99.6 108.4 At5g18670 831985 BMY3 putative beta-amylase BMY3 (BMY3) O.I. C.G. H.G.
21.0 99.6 21.6 At4g15430 827214 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMO O.I. C.G. H.G.
19.9 99.6 58.0 At3g21870 821742 CYCP2 F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;FOMPB O.I. C.G. H.G.
19.7 99.6 16.4 At1g26790 839220 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:endomembrane system;POMF O.I. C.G. H.G.
18.7 99.5 66.0 At4g00050 828175 UNE10 (unfertilized embryo sac 10) F:transcription factor activity, DNA binding;P:double fertilization forming a zygote and endosperm, regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.
17.9 99.5 100.4 At2g31380 817696 STH a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction. O.I. C.G. H.G.
17.7 99.5 114.7 At3g54500 824615 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB O.I. C.G. H.G.
17.1 99.5 104.3 At5g13770 831222 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFMAB O.I. C.G. H.G.
17.0 99.5 31.1 At4g18740 827608 transcription termination factor F:transcription termination factor activity;P:transcription termination;C:unknown;MPOBVF O.I. C.G. H.G.
16.9 99.5 55.1 At1g50730 841495 unknown protein F:unknown;P:unknown;C:unknown;MOPF O.I. C.G. H.G.
16.7 99.5 50.1 At1g75100 843847 JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1) Contains a J-domain at the C-terminus which is similar to the J-domain of auxilin, a clathrin-uncoating factor in cow, yeast and worm. Arabidopsis contains 6 other proteins similar to auxilin. Expressed in leaves and stems, but not in roots. Localized in the cytoplasm. Required for the chloroplast accumulation response, but not for the avoidance response. No molecular function known. O.I. C.G. H.G.
15.7 99.5 127.5 At1g55960 842047 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MPO O.I. C.G. H.G.
15.1 99.4 179.5 At5g10380 830902 RING1 Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators. O.I. C.G. H.G.
14.7 99.4 70.6 At3g54920 824657 PMR6 (powdery mildew resistant 6) Powdery mildew resistant mutant encodes a pectate lyase-like protein O.I. C.G. H.G.
14.7 99.4 30.7 At2g40670 818662 ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16) response regulator 16 O.I. C.G. H.G.
14.5 99.4 28.4 At2g19650 816484 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:unknown;POM O.I. C.G. H.G.
14.2 99.4 107.0 At1g68440 843173 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB O.I. C.G. H.G.
14.1 99.4 239.0 At1g66100 842924 thionin, putative Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. O.I. C.G. H.G.
14.1 99.4 31.1 At3g26200 822221 CYP71B22 putative cytochrome P450 O.I. C.G. H.G.
14.0 99.4 71.1 At1g42550 840860 PMI1 (PLASTID MOVEMENT IMPAIRED1) Encodes a plant-specific protein of unknown function that appears to be conserved among angiosperms. O.I. C.G. H.G.
13.7 99.4 39.3 At1g69730 843309 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system, integral to membrane;MPOBFVA O.I. C.G. H.G.
13.7 99.4 37.0 At4g37560 829911 formamidase, putative / formamide amidohydrolase, putative F:formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;P:metabolic process;C:cellular_component unknown;BOFAP O.I. C.G. H.G.
12.7 99.3 16.6 At1g65870 842898 disease resistance-responsive family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:cell wall;P O.I. C.G. H.G.
12.6 99.3 134.8 At5g02840 831766 LCL1 (LHY/CCA1-like 1) CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. O.I. C.G. H.G.
12.6 99.3 10.4 At3g09600 820117 myb family transcription factor F:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOF O.I. C.G. H.G.
12.4 99.3 201.6 At2g26020 817143 PDF1.2b (plant defensin 1.2b) Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
12.4 99.3 28.5 At4g02420 828035 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
12.1 99.3 56.9 At3g13062 820493 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO O.I. C.G. H.G.
11.8 99.3 54.4 At3g22420 821810 WNK2 (WITH NO K 2) Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms. O.I. C.G. H.G.
11.6 99.3 23.4 At5g58120 835924 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA O.I. C.G. H.G.
11.3 99.3 77.7 At1g35710 840475 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
11.2 99.2 40.8 At2g33250 817887 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
11.0 99.2 48.5 At2g24540 816990 AFR (ATTENUATED FAR-RED RESPONSE) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA O.I. C.G. H.G.
10.8 99.2 10.8 At4g11900 826797 S-locus lectin protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;PMOFBV O.I. C.G. H.G.
10.7 99.2 42.3 At5g54130 835500 - - O.I. C.G. H.G.
10.6 99.2 34.2 At1g49010 841324 myb family transcription factor F:transcription factor activity, DNA binding;P:in 6 processes;C:unknown;PMOFBV O.I. C.G. H.G.
10.4 99.2 172.7 At5g64840 836607 ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5) member of GCN subfamily O.I. C.G. H.G.
10.3 99.2 66.6 At2g03750 814902 sulfotransferase family protein F:sulfotransferase activity;P:biological_process unknown;C:endomembrane system;MPOBF O.I. C.G. H.G.
10.1 99.2 29.9 At5g44870 834517 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA O.I. C.G. H.G.
9.8 99.1 3.4 At4g00960 827937 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
9.6 99.1 108.7 At1g68520 843181 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POMF O.I. C.G. H.G.
9.6 99.1 71.5 At1g12520 837808 ATCCS (COPPER CHAPERONE FOR SOD1) Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta. O.I. C.G. H.G.
9.6 99.1 35.5 At3g44630 823589 disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation, defense response;C:intrinsic to membrane;PMBOFAV O.I. C.G. H.G.
9.6 99.1 11.2 At4g19510 827692 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMOBFA O.I. C.G. H.G.
9.5 99.1 142.6 At2g40100 818599 LHCB4.3 (light harvesting complex PSII) Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II O.I. C.G. H.G.
9.5 99.1 106.9 At1g64860 842794 SIGA (SIGMA FACTOR A) Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme O.I. C.G. H.G.
9.5 99.1 49.4 At5g03555 831791 permease, cytosine/purines, uracil, thiamine, allantoin family protein F:nucleobase transmembrane transporter activity;P:nucleobase, nucleoside, nucleotide and nucleic acid transport;C:membrane;BOFAPM O.I. C.G. H.G.
9.4 99.1 23.1 At4g04500 825780 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
9.3 99.1 46.8 At5g01015 831731 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
9.2 99.1 103.8 At4g38840 830039 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus, response to cold;C:plasma membrane;PO O.I. C.G. H.G.
9.2 99.1 76.8 At5g63180 836439 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:unknown;BPFO O.I. C.G. H.G.
9.2 99.1 72.2 At2g30010 817552 - F:unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
9.2 99.1 26.0 At1g53090 841743 SPA4 (SPA1-RELATED 4) Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. O.I. C.G. H.G.
9.1 99.1 55.1 At1g07010 837211 calcineurin-like phosphoesterase family protein F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:peroxisome;OBPFAV O.I. C.G. H.G.
9.1 99.1 46.4 At3g01550 821114 PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2) F:antiporter activity, triose-phosphate transmembrane transporter activity;P:triose phosphate transport, transport;C:integral to membrane, chloroplast, membrane;PMFOBA O.I. C.G. H.G.
9.1 99.1 41.1 At2g46450 819253 ATCNGC12 Member of Cyclic nucleotide gated channel family.Positive regulator of resistance against avirulent fungal pathogen.Suppresses the phenotype conferred by cpr22 in a dosage-dependent manner. O.I. C.G. H.G.
8.9 99.0 27.8 At3g17609 821027 HYH (HY5-HOMOLOG) F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO O.I. C.G. H.G.
8.9 99.0 22.8 At5g59670 836088 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
8.8 99.0 137.2 At5g51720 835246 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPO O.I. C.G. H.G.
8.8 99.0 70.1 At1g55000 841942 peptidoglycan-binding LysM domain-containing protein F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:endomembrane system;MPOB O.I. C.G. H.G.
8.8 99.0 43.1 At4g38860 830041 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
8.8 99.0 27.1 At5g56850 835787 unknown protein F:unknown;P:unknown;C:unknown;OMBFPAV O.I. C.G. H.G.
8.7 99.0 49.3 At1g15290 838097 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MBOFPAV O.I. C.G. H.G.
8.7 99.0 29.6 At4g04540 825785 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
8.7 99.0 29.3 At1g32520 840146 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPO O.I. C.G. H.G.
8.6 99.0 239.7 At5g49730 835036 ATFRO6 (FERRIC REDUCTION OXIDASE 6) Encodes a plasma membrane-located ferric chelate reductase. Its mRNA is expressed in green aerial tissues (shoot, flower and cotyledon) in a light- and cell differentiation-specific manner. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
74.9	99.9	217.5	At3g02380	821298	COL2 (constans-like 2)	homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins	O.I.	C.G.	H.G.
64.8	99.8	61.6	At1g49200	841343	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
62.6	99.8	49.0	At1g29720	839850	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
44.4	99.8	83.2	At5g17300	831595	myb family transcription factor	F:transcription factor activity;P:regulation of transcription;C:unknown;PMOFVB	O.I.	C.G.	H.G.
41.5	99.8	28.4	At3g15310	820762	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
37.5	99.7	141.1	At2g41250	818724	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:mitochondrion;BOMAPF	O.I.	C.G.	H.G.
34.5	99.7	41.8	At5g22390	832300	unknown protein	F:unknown;P:unknown;C:unknown;PMOF	O.I.	C.G.	H.G.
34.0	99.7	68.8	At1g64500	842758	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF	O.I.	C.G.	H.G.
33.9	99.7	42.3	At5g39660	833962	CDF2 (CYCLING DOF FACTOR 2)	Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions.	O.I.	C.G.	H.G.
32.6	99.7	69.5	At5g35490	833513	unknown protein	Encodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine.	O.I.	C.G.	H.G.
31.7	99.7	244.3	At1g01060	839341	LHY (LATE ELONGATED HYPOCOTYL)	LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1	O.I.	C.G.	H.G.
29.8	99.7	11.3	At5g04190	830297	PKS4 (phytochrome kinase substrate 4)	Encodes phytochrome kinase substrate 4, a phytochrome signaling component involved in phototropism.	O.I.	C.G.	H.G.
28.7	99.7	61.1	At2g21650	816703	MEE3 (MATERNAL EFFECT EMBRYO ARREST 3)	F:transcription factor activity, DNA binding;P:embryonic development ending in seed dormancy, regulation of transcription, DNA-dependent;C:unknown;PMO	O.I.	C.G.	H.G.
25.0	99.6	119.3	At2g46830	819296	CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)	Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.	O.I.	C.G.	H.G.
23.0	99.6	96.0	At5g15850	831442	COL1 (constans-like 1)	Homologous to the flowering-time gene CONSTANS.	O.I.	C.G.	H.G.
22.7	99.6	74.7	At1g78290	844164	-	-	O.I.	C.G.	H.G.
21.1	99.6	108.4	At5g18670	831985	BMY3	putative beta-amylase BMY3 (BMY3)	O.I.	C.G.	H.G.
21.0	99.6	21.6	At4g15430	827214	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMO	O.I.	C.G.	H.G.
19.9	99.6	58.0	At3g21870	821742	CYCP2	F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;FOMPB	O.I.	C.G.	H.G.
19.7	99.6	16.4	At1g26790	839220	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:endomembrane system;POMF	O.I.	C.G.	H.G.
18.7	99.5	66.0	At4g00050	828175	UNE10 (unfertilized embryo sac 10)	F:transcription factor activity, DNA binding;P:double fertilization forming a zygote and endosperm, regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.
17.9	99.5	100.4	At2g31380	817696	STH	a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction.	O.I.	C.G.	H.G.
17.7	99.5	114.7	At3g54500	824615	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB	O.I.	C.G.	H.G.
17.1	99.5	104.3	At5g13770	831222	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFMAB	O.I.	C.G.	H.G.
17.0	99.5	31.1	At4g18740	827608	transcription termination factor	F:transcription termination factor activity;P:transcription termination;C:unknown;MPOBVF	O.I.	C.G.	H.G.
16.9	99.5	55.1	At1g50730	841495	unknown protein	F:unknown;P:unknown;C:unknown;MOPF	O.I.	C.G.	H.G.
16.7	99.5	50.1	At1g75100	843847	JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1)	Contains a J-domain at the C-terminus which is similar to the J-domain of auxilin, a clathrin-uncoating factor in cow, yeast and worm. Arabidopsis contains 6 other proteins similar to auxilin. Expressed in leaves and stems, but not in roots. Localized in the cytoplasm. Required for the chloroplast accumulation response, but not for the avoidance response. No molecular function known.	O.I.	C.G.	H.G.
15.7	99.5	127.5	At1g55960	842047	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPO	O.I.	C.G.	H.G.
15.1	99.4	179.5	At5g10380	830902	RING1	Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators.	O.I.	C.G.	H.G.
14.7	99.4	70.6	At3g54920	824657	PMR6 (powdery mildew resistant 6)	Powdery mildew resistant mutant encodes a pectate lyase-like protein	O.I.	C.G.	H.G.
14.7	99.4	30.7	At2g40670	818662	ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16)	response regulator 16	O.I.	C.G.	H.G.
14.5	99.4	28.4	At2g19650	816484	DC1 domain-containing protein	F:unknown;P:intracellular signaling cascade;C:unknown;POM	O.I.	C.G.	H.G.
14.2	99.4	107.0	At1g68440	843173	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB	O.I.	C.G.	H.G.
14.1	99.4	239.0	At1g66100	842924	thionin, putative	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.	O.I.	C.G.	H.G.
14.1	99.4	31.1	At3g26200	822221	CYP71B22	putative cytochrome P450	O.I.	C.G.	H.G.
14.0	99.4	71.1	At1g42550	840860	PMI1 (PLASTID MOVEMENT IMPAIRED1)	Encodes a plant-specific protein of unknown function that appears to be conserved among angiosperms.	O.I.	C.G.	H.G.
13.7	99.4	39.3	At1g69730	843309	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system, integral to membrane;MPOBFVA	O.I.	C.G.	H.G.
13.7	99.4	37.0	At4g37560	829911	formamidase, putative / formamide amidohydrolase, putative	F:formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;P:metabolic process;C:cellular_component unknown;BOFAP	O.I.	C.G.	H.G.
12.7	99.3	16.6	At1g65870	842898	disease resistance-responsive family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:cell wall;P	O.I.	C.G.	H.G.
12.6	99.3	134.8	At5g02840	831766	LCL1 (LHY/CCA1-like 1)	CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.	O.I.	C.G.	H.G.
12.6	99.3	10.4	At3g09600	820117	myb family transcription factor	F:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOF	O.I.	C.G.	H.G.
12.4	99.3	201.6	At2g26020	817143	PDF1.2b (plant defensin 1.2b)	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
12.4	99.3	28.5	At4g02420	828035	lectin protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
12.1	99.3	56.9	At3g13062	820493	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO	O.I.	C.G.	H.G.
11.8	99.3	54.4	At3g22420	821810	WNK2 (WITH NO K 2)	Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms.	O.I.	C.G.	H.G.
11.6	99.3	23.4	At5g58120	835924	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA	O.I.	C.G.	H.G.
11.3	99.3	77.7	At1g35710	840475	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
11.2	99.2	40.8	At2g33250	817887	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
11.0	99.2	48.5	At2g24540	816990	AFR (ATTENUATED FAR-RED RESPONSE)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA	O.I.	C.G.	H.G.
10.8	99.2	10.8	At4g11900	826797	S-locus lectin protein kinase family protein	F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;PMOFBV	O.I.	C.G.	H.G.
10.7	99.2	42.3	At5g54130	835500	-	-	O.I.	C.G.	H.G.
10.6	99.2	34.2	At1g49010	841324	myb family transcription factor	F:transcription factor activity, DNA binding;P:in 6 processes;C:unknown;PMOFBV	O.I.	C.G.	H.G.
10.4	99.2	172.7	At5g64840	836607	ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5)	member of GCN subfamily	O.I.	C.G.	H.G.
10.3	99.2	66.6	At2g03750	814902	sulfotransferase family protein	F:sulfotransferase activity;P:biological_process unknown;C:endomembrane system;MPOBF	O.I.	C.G.	H.G.
10.1	99.2	29.9	At5g44870	834517	disease resistance protein (TIR-NBS-LRR class), putative	F:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA	O.I.	C.G.	H.G.
9.8	99.1	3.4	At4g00960	827937	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
9.6	99.1	108.7	At1g68520	843181	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POMF	O.I.	C.G.	H.G.
9.6	99.1	71.5	At1g12520	837808	ATCCS (COPPER CHAPERONE FOR SOD1)	Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta.	O.I.	C.G.	H.G.
9.6	99.1	35.5	At3g44630	823589	disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation, defense response;C:intrinsic to membrane;PMBOFAV	O.I.	C.G.	H.G.
9.6	99.1	11.2	At4g19510	827692	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMOBFA	O.I.	C.G.	H.G.
9.5	99.1	142.6	At2g40100	818599	LHCB4.3 (light harvesting complex PSII)	Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II	O.I.	C.G.	H.G.
9.5	99.1	106.9	At1g64860	842794	SIGA (SIGMA FACTOR A)	Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme	O.I.	C.G.	H.G.
9.5	99.1	49.4	At5g03555	831791	permease, cytosine/purines, uracil, thiamine, allantoin family protein	F:nucleobase transmembrane transporter activity;P:nucleobase, nucleoside, nucleotide and nucleic acid transport;C:membrane;BOFAPM	O.I.	C.G.	H.G.
9.4	99.1	23.1	At4g04500	825780	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
9.3	99.1	46.8	At5g01015	831731	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
9.2	99.1	103.8	At4g38840	830039	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus, response to cold;C:plasma membrane;PO	O.I.	C.G.	H.G.
9.2	99.1	76.8	At5g63180	836439	pectate lyase family protein	F:lyase activity, pectate lyase activity;P:biological_process unknown;C:unknown;BPFO	O.I.	C.G.	H.G.
9.2	99.1	72.2	At2g30010	817552	-	F:unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
9.2	99.1	26.0	At1g53090	841743	SPA4 (SPA1-RELATED 4)	Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants.	O.I.	C.G.	H.G.
9.1	99.1	55.1	At1g07010	837211	calcineurin-like phosphoesterase family protein	F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:peroxisome;OBPFAV	O.I.	C.G.	H.G.
9.1	99.1	46.4	At3g01550	821114	PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2)	F:antiporter activity, triose-phosphate transmembrane transporter activity;P:triose phosphate transport, transport;C:integral to membrane, chloroplast, membrane;PMFOBA	O.I.	C.G.	H.G.
9.1	99.1	41.1	At2g46450	819253	ATCNGC12	Member of Cyclic nucleotide gated channel family.Positive regulator of resistance against avirulent fungal pathogen.Suppresses the phenotype conferred by cpr22 in a dosage-dependent manner.	O.I.	C.G.	H.G.
8.9	99.0	27.8	At3g17609	821027	HYH (HY5-HOMOLOG)	F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO	O.I.	C.G.	H.G.
8.9	99.0	22.8	At5g59670	836088	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
8.8	99.0	137.2	At5g51720	835246	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPO	O.I.	C.G.	H.G.
8.8	99.0	70.1	At1g55000	841942	peptidoglycan-binding LysM domain-containing protein	F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:endomembrane system;MPOB	O.I.	C.G.	H.G.
8.8	99.0	43.1	At4g38860	830041	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
8.8	99.0	27.1	At5g56850	835787	unknown protein	F:unknown;P:unknown;C:unknown;OMBFPAV	O.I.	C.G.	H.G.
8.7	99.0	49.3	At1g15290	838097	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;MBOFPAV	O.I.	C.G.	H.G.
8.7	99.0	29.6	At4g04540	825785	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
8.7	99.0	29.3	At1g32520	840146	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPO	O.I.	C.G.	H.G.
8.6	99.0	239.7	At5g49730	835036	ATFRO6 (FERRIC REDUCTION OXIDASE 6)	Encodes a plasma membrane-located ferric chelate reductase. Its mRNA is expressed in green aerial tissues (shoot, flower and cotyledon) in a light- and cell differentiation-specific manner.	O.I.	C.G.	H.G.

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GSM ID	GSM142814
Assay name	SS002_ATH1_A6-smith-12h
GSE experiment	GSE6174: Gene expression and carbohydrate metabolism through the diurnal cycle

Microarray experiments to specifically-expressed genes

GSM ID GSM142814 Assay name SS002_ATH1_A6-smith-12h GSE experiment GSE6174: Gene expression and carbohydrate metabolism through the diurnal cycle

GSM ID GSM142814

Assay name SS002_ATH1_A6-smith-12h

GSE experiment GSE6174: Gene expression and carbohydrate metabolism through the diurnal cycle