Microarray experiments to specifically-expressed genes

GSM ID GSM142811
Assay name SS002_ATH1_A3-smith-02h
GSE experiment GSE6174: Gene expression and carbohydrate metabolism through the diurnal cycle

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
63.799.880.0At3g11010820272AtRLP34 (Receptor Like Protein 34)F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAVO.I.C.G.H.G.
59.499.859.0At5g59670836088leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
33.199.7138.8At4g23140828413CRK6 (CYSTEINE-RICH RLK 6)Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)O.I.C.G.H.G.
29.099.771.8At2g32680817828AtRLP23 (Receptor Like Protein 23)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
27.599.7140.6At3g45860823729receptor-like protein kinase, putativeF:kinase activity;P:defense response;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
25.999.751.0At4g04540825785protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
25.999.746.4At5g58310835943MES18 (METHYL ESTERASE 18)Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
25.699.7233.8At2g40100818599LHCB4.3 (light harvesting complex PSII)Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem IIO.I.C.G.H.G.
20.299.69.9At4g13810827015AtRLP47 (Receptor Like Protein 47)F:protein binding;P:signal transduction, defense response;C:unknown;PMOBFAVO.I.C.G.H.G.
19.999.6255.3At2g26020817143PDF1.2b (plant defensin 1.2b)Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
19.899.639.4At5g60800836201heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:unknown;POMFBVAO.I.C.G.H.G.
16.099.5183.6At4g14400827085ACD6 (ACCELERATED CELL DEATH 6)encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae.O.I.C.G.H.G.
16.099.592.4At1g35710840475leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
15.699.570.6At2g46430819251ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3)cyclic nucleotide gated channel (CNGC4), downstream component of the signaling pathways leading to HR/resistanceO.I.C.G.H.G.
15.699.513.0At4g11900826797S-locus lectin protein kinase family proteinF:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;PMOFBVO.I.C.G.H.G.
15.099.4216.3At5g44420834469PDF1.2Encodes an ethylene- and jasmonate-responsive plant defensin. mRNA levels are not responsive to salicylic acid treatment; although jasmonate and salicylic acid can act synergistically to enhance the expression of this gene. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
15.099.411.5At3g01960821109unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.699.412.1At3g16360820883AHP4 (HPT PHOSPHOTRANSMITTER 4)Encodes AHP4, a histidine-containing phosphotransmitter involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHP4 is one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).O.I.C.G.H.G.
14.099.429.2At5g64000836521SAL23'(2'),5'-bisphosphate nucleotidaseO.I.C.G.H.G.
13.299.492.2At5g63180836439pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:unknown;BPFOO.I.C.G.H.G.
13.199.465.5At4g00490827959BAM2 (BETA-AMYLASE 2)Encodes a chloroplast beta-amylase. The enzyme activity is very weak compared to BAM1 and BAM3. Mutant of BAM2 has no visible phenotype.O.I.C.G.H.G.
12.799.333.1At4g03450827913ankyrin repeat family proteinF:protein binding;P:unknown;C:unknown;MOPFBVAO.I.C.G.H.G.
12.799.329.5At3g26200822221CYP71B22putative cytochrome P450O.I.C.G.H.G.
12.099.364.9At3g20810821629transcription factor jumonji (jmjC) domain-containing proteinF:transcription factor activity;P:biological_process unknown;C:cellular_component unknown;MBOFPVO.I.C.G.H.G.
11.999.339.2At1g63880842692disease resistance protein (TIR-NBS-LRR class), putativeEncodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans.O.I.C.G.H.G.
11.799.333.6At2g47880819400glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBOO.I.C.G.H.G.
11.799.316.6At4g18250827551receptor serine/threonine kinase, putativeF:transmembrane receptor protein serine/threonine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
11.499.322.3At3g23110821886AtRLP37 (Receptor Like Protein 37)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
11.299.255.8At1g61180842411disease resistance protein (CC-NBS-LRR class), putativeF:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:plasma membrane;PMBOFAO.I.C.G.H.G.
11.299.238.2At2g21650816703MEE3 (MATERNAL EFFECT EMBRYO ARREST 3)F:transcription factor activity, DNA binding;P:embryonic development ending in seed dormancy, regulation of transcription, DNA-dependent;C:unknown;PMOO.I.C.G.H.G.
11.299.225.1At1g79110844252protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVFO.I.C.G.H.G.
10.999.241.9At1g53230841756TCP3Encodes a member of a recently identified plant transcription factor family that includes Teosinte branched 1, Cycloidea 1, and proliferating cell nuclear antigen (PCNA) factors, PCF1 and 2. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation.O.I.C.G.H.G.
10.899.218.8At3g26230822224CYP71B24putative cytochrome P450O.I.C.G.H.G.
10.599.27.8At1g17600838336disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAO.I.C.G.H.G.
10.499.224.2At4g04500825780protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
10.399.259.5At2g41180818717sigA-binding protein-relatedF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
10.199.233.7At1g69730843309protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system, integral to membrane;MPOBFVAO.I.C.G.H.G.
9.999.1141.7At1g73655843700FK506 binding / peptidyl-prolyl cis-trans isomeraseF:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast;BOPMFO.I.C.G.H.G.
9.999.111.2At5g36930833662disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAVO.I.C.G.H.G.
9.799.119.3At1g29720839850protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
9.599.168.4At3g04210819576disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBMOO.I.C.G.H.G.
9.499.169.7At1g66940843012protein kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO.I.C.G.H.G.
9.399.124.4At2g40670818662ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16)response regulator 16O.I.C.G.H.G.
9.299.140.6At5g39210833917CRR7 (CHLORORESPIRATORY REDUCTION 7)Encodes a protein of the chloroplastic NAD(P)H dehydrogenase complex (NDH Complex) involved in respiration, photosystem I (PSI) cyclic electron transport and CO2 uptake. The product of this gene appears to be essential for the stable formation of the NDH Complex.O.I.C.G.H.G.
9.299.119.4At3g28080822432nodulin MtN21 family proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PBOAMO.I.C.G.H.G.
9.199.148.7At1g21270838723WAK2cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase.O.I.C.G.H.G.
8.999.028.7At2g36430818217unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage