Microarray experiments to specifically-expressed genes

GSM ID GSM142804
Assay name SS001_ATH1_A7-Smith-10
GSE experiment GSE6174: Gene expression and carbohydrate metabolism through the diurnal cycle

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
229.4100.066.7At3g15310820762transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
116.499.9113.0At5g42760834285-F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMFO.I.C.G.H.G.
95.599.9289.3At5g15950831452adenosylmethionine decarboxylase family proteinF:adenosylmethionine decarboxylase activity;P:spermidine biosynthetic process, spermine biosynthetic process, polyamine biosynthetic process;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
84.799.943.0At1g65870842898disease resistance-responsive family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:cell wall;PO.I.C.G.H.G.
75.999.9112.7At5g54130835500--O.I.C.G.H.G.
55.499.868.2At3g21890821744zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:response to UV-B, regulation of transcription;C:intracellular;POO.I.C.G.H.G.
49.399.836.5At4g26150828721CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1)F:transcription factor activity;P:response to cytokinin stimulus;C:nucleus;FPOMO.I.C.G.H.G.
47.399.819.5At1g01520839337myb family transcription factorF:transcription factor activity, DNA binding;P:response to salt stress, regulation of transcription, DNA-dependent;C:unknown;POMO.I.C.G.H.G.
40.399.829.8At3g58070824976GIS (GLABROUS INFLORESCENCE STEMS)Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenileľadult leaf transition and inducing the formation of rosette leaves on inflorescence stems.O.I.C.G.H.G.
34.599.756.0At2g27420817287cysteine proteinase, putativeF:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPBVAFO.I.C.G.H.G.
33.599.741.4At2g15020815991unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
32.899.7136.8At2g46830819296CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.O.I.C.G.H.G.
32.099.742.1At1g73870843723zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POO.I.C.G.H.G.
27.599.7211.5At1g32900840184starch synthase, putativeF:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFMO.I.C.G.H.G.
27.099.738.8At2g19650816484DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:unknown;POMO.I.C.G.H.G.
26.599.7165.5At1g55960842047-F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOO.I.C.G.H.G.
26.199.728.3At5g56860835788GNC (GATA, nitrate-inducible, carbon metabolism-involved)F:transcription factor activity;P:glucose mediated signaling, regulation of nitrogen compound metabolic process;C:nucleus;FPOMBO.I.C.G.H.G.
24.599.653.5At1g78510844187SPS1 (solanesyl diphosphate synthase 1)Encodes a protein with solanesyl diphosphate synthase activity.O.I.C.G.H.G.
24.499.695.0At5g24120832477SIGE (SIGMA FACTOR E)Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.O.I.C.G.H.G.
24.199.645.6At3g17609821027HYH (HY5-HOMOLOG)F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFOO.I.C.G.H.G.
23.899.664.7At2g36630818235unknown proteinF:unknown;P:N-terminal protein myristoylation;C:endomembrane system, integral to membrane;BOPAO.I.C.G.H.G.
23.699.6210.8At1g01060839341LHY (LATE ELONGATED HYPOCOTYL)LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1O.I.C.G.H.G.
21.099.6187.8At3g56290824796unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
21.099.673.5At5g03555831791permease, cytosine/purines, uracil, thiamine, allantoin family proteinF:nucleobase transmembrane transporter activity;P:nucleobase, nucleoside, nucleotide and nucleic acid transport;C:membrane;BOFAPMO.I.C.G.H.G.
20.799.656.5At5g14760831328AO (L-ASPARTATE OXIDASE)At5g14760 encodes for L-aspartate oxidase involved in the early steps of NAD biosynthesis. In contrary to the EC 1.4.3.16 (l-aspartate oxidase - deaminating) the enzyme catalyzes the reaction L-aspartate + O2 = iminoaspartate (alpha-iminosuccinate) + H2O2O.I.C.G.H.G.
20.499.6223.2At1g65490842861unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
20.099.668.2At4g00050828175UNE10 (unfertilized embryo sac 10)F:transcription factor activity, DNA binding;P:double fertilization forming a zygote and endosperm, regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
19.299.664.6At5g52570835334BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)Converts β-carotene to zeaxanthin via cryptoxanthin.O.I.C.G.H.G.
19.199.651.6At1g64500842758glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOFO.I.C.G.H.G.
18.899.586.7At5g15850831442COL1 (constans-like 1)Homologous to the flowering-time gene CONSTANS.O.I.C.G.H.G.
18.899.543.4At4g04540825785protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
18.599.568.5At5g58770835991dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putativeF:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:chloroplast;OBAFMPO.I.C.G.H.G.
18.299.5319.6At4g17090827419CT-BMY (CHLOROPLAST BETA-AMYLASE)Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected).O.I.C.G.H.G.
18.199.5110.8At4g01080827902unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
16.799.5120.8At2g47440819357DNAJ heat shock N-terminal domain-containing proteinF:binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
16.599.5135.1At5g24150832480SQP1squalene monooxygenase gene homologO.I.C.G.H.G.
16.099.542.9At5g62430836364CDF1 (CYCLING DOF FACTOR 1)Dof-type zinc finger domain-containing protein, similar to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Represses expression of Constans (CO), a circadian regulator of flowering time. Interacts with LKP2 and FKF1. Expression oscillates under constant light conditions. Mainly expressed in the vasculature of cotyledons, leaves and hypocotyls, but also in stomata. Localized to the nucleus and acts as a repressor of CONSTANS through binding to the Dof binding sites in the CO promoter. Protein gets degraded by FKF1 in the afternoon.O.I.C.G.H.G.
15.899.557.8At2g01290814657ribose-5-phosphate isomeraseF:ribose-5-phosphate isomerase activity;P:glucose catabolic process to lactate and acetate, 5-phosphoribose 1-diphosphate biosynthetic process, reductive pentose-phosphate cycle, D-ribose catabolic process, pentose-phosphate shunt, non-oxidative branch;C:cytoplasm;BOAFMPO.I.C.G.H.G.
15.599.560.6At3g01550821114PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2)F:antiporter activity, triose-phosphate transmembrane transporter activity;P:triose phosphate transport, transport;C:integral to membrane, chloroplast, membrane;PMFOBAO.I.C.G.H.G.
15.599.514.6At1g26790839220Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:endomembrane system;POMFO.I.C.G.H.G.
14.999.4175.4At3g21670821721nitrate transporter (NTP3)F:transporter activity;P:oligopeptide transport;C:membrane;BPMOFO.I.C.G.H.G.
14.999.442.0At1g70000843337DNA-binding family proteinF:transcription factor activity, nucleic acid binding;P:in 9 processes;C:unknown;POMO.I.C.G.H.G.
14.699.419.6At1g70985843437hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PMBFOVAO.I.C.G.H.G.
14.699.411.2At3g09600820117myb family transcription factorF:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOFO.I.C.G.H.G.
14.599.4103.8At3g54500824615-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBO.I.C.G.H.G.
14.599.427.4At4g17880827511basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOVBO.I.C.G.H.G.
14.399.460.6At1g17050838275SPS2 (Solanesyl diphosphate synthase 2)Encodes a protein with solanesyl diphosphate synthase activity.O.I.C.G.H.G.
14.299.466.9At3g47430823897PEX11Bmember of the peroxin11 (PEX11) gene family, located on the peroxisome membrane, controls peroxisome proliferation.O.I.C.G.H.G.
13.799.445.8At4g27030828811small conjugating protein ligaseF:small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:chloroplast;MOPBVO.I.C.G.H.G.
13.699.492.8At3g02380821298COL2 (constans-like 2)homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteinsO.I.C.G.H.G.
13.599.454.3At5g11650831037hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:chloroplast;BOPMFVAO.I.C.G.H.G.
13.499.487.0At2g31380817696STHa B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction.O.I.C.G.H.G.
12.999.352.5At2g24540816990AFR (ATTENUATED FAR-RED RESPONSE)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVAO.I.C.G.H.G.
12.999.347.4At2g40400818633unknown proteinF:unknown;P:unknown;C:chloroplast thylakoid lumen;PBOMO.I.C.G.H.G.
12.999.346.9At5g47610834811zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
12.799.3197.0At1g62180842514APR2 (5'ADENYLYLPHOSPHOSULFATE REDUCTASE 2)encodes a adenosine 5'-phosphosulfate reductase, involved in sulfate assimilation. Is a major effect locus for natural variation of shoot sulfate content in Arabidopsis.O.I.C.G.H.G.
12.699.364.9At1g07010837211calcineurin-like phosphoesterase family proteinF:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:peroxisome;OBPFAVO.I.C.G.H.G.
12.699.332.4At5g50100835074-F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OBPMO.I.C.G.H.G.
12.399.369.0At3g14770820705nodulin MtN3 family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMOO.I.C.G.H.G.
12.199.329.7At1g53090841743SPA4 (SPA1-RELATED 4)Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants.O.I.C.G.H.G.
12.099.339.7At3g44630823589disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation, defense response;C:intrinsic to membrane;PMBOFAVO.I.C.G.H.G.
11.999.3159.1At5g10380830902RING1Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators.O.I.C.G.H.G.
11.999.342.0At5g23730832438nucleotide bindingF:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPAO.I.C.G.H.G.
11.799.3205.7At3g17800821048-mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stemO.I.C.G.H.G.
11.399.3213.6At1g66100842924thionin, putativePredicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.O.I.C.G.H.G.
11.199.240.6At5g35490833513unknown proteinEncodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine.O.I.C.G.H.G.
10.999.255.9At2g47490819362mitochondrial substrate carrier family proteinF:transporter activity, binding;P:transport, mitochondrial transport;C:endomembrane system, mitochondrial inner membrane, membrane;MFPOVO.I.C.G.H.G.
10.999.236.8At2g33530817918scpl46 (serine carboxypeptidase-like 46)F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOBO.I.C.G.H.G.
10.899.281.2At3g17510821016CIPK1 (CBL-INTERACTING PROTEIN KINASE 1)Encodes a CBL-interacting protein kinase. Specifically interacts with ECT1 and ECT2.O.I.C.G.H.G.
10.599.279.6At3g12320820411unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
10.599.251.1At3g16910820946AAE7 (ACYL-ACTIVATING ENZYME 7)Encodes a peroxisomal protein with acetyl-CoA synthetase activity that is responsible for the activation of acetate for entry into the glyoxylate cycle.O.I.C.G.H.G.
10.599.226.3At4g02420828035lectin protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
10.399.269.1At1g07180837229NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1)Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane.O.I.C.G.H.G.
10.299.254.6At4g20170827763unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOFO.I.C.G.H.G.
10.299.213.9At5g1620083147850S ribosomal protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.199.219.7At1g29720839850protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
9.999.121.6At2g23130816845AGP17 (ARABINOGALACTAN PROTEIN 17)AGP17 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP18 and AGP19, other lysine-rich AGPs. 84% of its proline residues are hydroxylated to hydroproline and its heavy glycosylation accounts for appr. 69% of the molecular weight. The main glycosyl residues are arabinose (30.1%) and galactose (55.1%). Glycosyl linkages are consistent with type II arabinogalactans. AGP17 is predicted to have a glycosylphosphatidylinositol (GPI)anchor and is localized to the plasma membrane and Hechtian strands. It is expressed in young/old leaves, shoots, suspension cultures and flowers.O.I.C.G.H.G.
9.899.124.5At2g41120818711unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;BOPO.I.C.G.H.G.
9.799.186.1At2g41560818754ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)encodes a calmodulin-regulated Ca(2+)-ATPase that improves salt tolerance in yeast. localized to the vacuole.O.I.C.G.H.G.
9.699.175.7At3g08730820020PK1 (PROTEIN-SERINE KINASE 1)Encodes a protein-serine kinase that phosphorylates ribosomal protein in vitro. Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Involved in translational up-regulation of ribosomal proteins. Phosphorylated by PDK1. Interacts with RAPTOR1, which in turn interacts with TOR. SPK6 activity is affected by osmotic stress, and plants overexpressing S6k1 are hypersensitive to osmotic stress. The gene is expressed in all tissues examined, with highest expression level detected in metabolically active tissues.O.I.C.G.H.G.
9.599.1225.7At4g26850828792VTC2 (vitamin c defective 2)Encodes a novel protein involved in ascorbate biosynthesis, which was shown to catalyze the transfer of GMP from GDP-galactose to a variety of hexose-1-phosphate acceptors. Recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light.O.I.C.G.H.G.
9.499.158.2At1g42550840860PMI1 (PLASTID MOVEMENT IMPAIRED1)Encodes a plant-specific protein of unknown function that appears to be conserved among angiosperms.O.I.C.G.H.G.
9.299.157.5At4g16490827347bindingF:binding;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
9.299.126.3At4g14240827065-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
9.199.138.7At2g21320816671zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POMO.I.C.G.H.G.
9.199.137.4At5g62220836343exostosin family proteinF:catalytic activity;P:unknown;C:chloroplast, membrane;POMO.I.C.G.H.G.
9.199.133.4At2g28200817366nucleic acid binding / transcription factor/ zinc ion bindingF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MPOFO.I.C.G.H.G.
9.199.129.4At5g19850832105hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BOMPFAO.I.C.G.H.G.
9.099.118.5At5g55380835631membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-relatedF:acyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BPOFO.I.C.G.H.G.
9.099.118.4At1g05170839292galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOO.I.C.G.H.G.
8.899.050.2At1g23030838911armadillo/beta-catenin repeat family protein / U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;PMOFBVO.I.C.G.H.G.
8.899.025.1At4g09350826517DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAVO.I.C.G.H.G.
8.899.018.4At1g19700838558BEL10 (BEL1-LIKE HOMEODOMAIN 10)Encodes a member of the BEL family of homeodomain proteins. Its interaction with PLP (PAS/LOV PROTEIN) is diminished by blue light.O.I.C.G.H.G.
8.799.074.2At3g01060821278unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;BOFPO.I.C.G.H.G.
8.799.061.0At3g44450823570unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
8.799.022.3At4g18740827608transcription termination factorF:transcription termination factor activity;P:transcription termination;C:unknown;MPOBVFO.I.C.G.H.G.
8.699.033.9At2g41940818794ZFP8 (ZINC FINGER PROTEIN 8)Encodes a zinc finger protein containing only a single zinc finger.O.I.C.G.H.G.
8.699.015.9At5g54470835535zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POFMO.I.C.G.H.G.
8.699.011.1At5g06790830569unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.



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