Microarray experiments to specifically-expressed genes

GSM ID GSM142772
Assay name AM002_ATH1_A7-MCCOR-GFB
GSE experiment GSE6169: Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
79.199.9172.3At1g18330838413EPR1 (EARLY-PHYTOCHROME-RESPONSIVE1)EARLY-PHYTOCHROME-RESPONSIVE1O.I.C.G.H.G.
75.899.9142.7At1g08630837385THA1 (Threonine Aldolase 1)Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.O.I.C.G.H.G.
61.799.849.3At3g15620820804UVR3 (UV REPAIR DEFECTIVE 3)Required for photorepair of 6-4 photoproducts in Arabidopsis thaliana.O.I.C.G.H.G.
58.199.8102.8At1g54740841915-F:molecular_function unknown;P:biological_process unknown;C:unknown;OPMBFO.I.C.G.H.G.
49.399.857.7At3g50560824220short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
40.299.8124.4At3g14770820705nodulin MtN3 family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMOO.I.C.G.H.G.
38.499.8115.4At4g17245827437zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
36.199.791.7At3g49790824141ATP bindingF:ATP binding;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
35.399.7175.2At4g37220829876stress-responsive protein, putativeF:molecular_function unknown;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus, response to stress;C:cellular_component unknown;PO.I.C.G.H.G.
33.499.764.9At5g50450835113zinc finger (MYND type) family proteinF:binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;FPBMOO.I.C.G.H.G.
30.899.760.6At5g15780831434pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFVAO.I.C.G.H.G.
29.499.770.8At5g47610834811zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
28.999.748.1At5g52250835301transducin family protein / WD-40 repeat family proteinEncodes a transducin protein whose gene expression is induced by UV-B. This induction is reduced in hy5 mutant and may be a target of HY5 during UV-B response.O.I.C.G.H.G.
28.699.769.6At3g21870821742CYCP2F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;FOMPBO.I.C.G.H.G.
27.599.723.5At5g14470831298GHMP kinase-relatedF:kinase activity, phosphotransferase activity, alcohol group as acceptor, galactokinase activity, ATP binding;P:metabolic process, phosphorylation;C:cytoplasm;BOPAMO.I.C.G.H.G.
27.199.718.4At3g30460822758zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.C.G.H.G.
26.999.723.6At1g78720844208protein transport protein sec61, putativeF:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:protein secretion, protein transport;C:membrane;BOMAFPO.I.C.G.H.G.
25.099.6189.8At5g02840831766LCL1 (LHY/CCA1-like 1)CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.O.I.C.G.H.G.
25.099.6111.5At5g56100835709glycine-rich protein / oleosinF:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PBO.I.C.G.H.G.
24.899.6101.7At5g53970835480aminotransferase, putativeencodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatmentO.I.C.G.H.G.
24.899.640.1At1g49650841389cell death associated protein-relatedF:hydrolase activity;P:metabolic process;C:unknown;BOPFMAVO.I.C.G.H.G.
23.499.658.9At5g23730832438nucleotide bindingF:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPAO.I.C.G.H.G.
21.099.673.2At1g214008387392-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putativeF:oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity;P:metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
21.099.655.9At2g33250817887unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
20.899.660.5At2g36630818235unknown proteinF:unknown;P:N-terminal protein myristoylation;C:endomembrane system, integral to membrane;BOPAO.I.C.G.H.G.
20.799.661.0At1g22430838849alcohol dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAVO.I.C.G.H.G.
20.199.6106.8At1g29090839784peptidase C1A papain family proteinF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
19.899.668.0At2g40420818635amino acid transporter family proteinEncodes a putative amino acid transporter.O.I.C.G.H.G.
19.699.630.1At1g79360844274ATOCT2 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 2)F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:ion transport;C:integral to membrane, membrane;BMFPOAO.I.C.G.H.G.
19.499.637.6At4g17810827503nucleic acid binding / transcription factor/ zinc ion bindingF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PO.I.C.G.H.G.
19.299.6238.8At2g39570818542ACT domain-containing proteinF:amino acid binding;P:metabolic process;C:unknown;POBO.I.C.G.H.G.
18.299.5251.1At3g48360823994BT2 (BTB AND TAZ DOMAIN PROTEIN 2)encodes a protein (BT2) that is an essential component of the TAC1-mediated telomerase activation pathway. Acts redundantly with BT3 and BT1 during female gametophyte development and with BT3 during male gametophyte development.O.I.C.G.H.G.
18.199.555.2At1g76410843974ATL8F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
17.999.5138.3At1g10070837543ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.O.I.C.G.H.G.
17.999.535.8At5g57360835842ZTL (ZEITLUPE)Encodes clock-associated PAS protein ZTL; Also known as FKF1-like protein 2 or ADAGIO1(ADO1). A protein containing a PAS domain ZTL contributes to the plant fitness (carbon fixation, biomass) by influencing the circadian clock period. ZTL is the F-box component of an SCF complex implicated in the degradation of TOC1.O.I.C.G.H.G.
17.799.5101.0At5g20520832174WAV2 (WAVY GROWTH 2)Encodes a Bem46-like protein. WAV2 negatively regulates root bending when roots alter their growth direction. It's not involved in sensing environmental stimuli (e.g. gravity, light, water, touch).O.I.C.G.H.G.
17.499.5159.6At5g59030836020COPT1 (copper transporter 1)encodes a putative copper transport protein that contains copper-binding motif and functionally complements in copper-transport defective yeast strainsO.I.C.G.H.G.
17.299.584.4At1g80160844356lactoylglutathione lyase family protein / glyoxalase I family proteinF:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:unknown;BPOO.I.C.G.H.G.
16.999.599.5At5g56750835777Ndr family proteinF:molecular_function unknown;P:cell differentiation;C:cellular_component unknown;MPBOO.I.C.G.H.G.
16.999.579.6At1g78140844150methyltransferase-relatedF:methyltransferase activity;P:metabolic process;C:chloroplast, plastoglobule;BOAPFMO.I.C.G.H.G.
16.799.551.2At4g16690827371MES16 (METHYL ESTERASE 16)Encodes a protein shown to have carboxylesterase activity, methyl IAA esterase activity, and methyl jasmonate esterase activity in vitro. This protein does not act on MeSA, MeGA4, or MEGA9 in vitro. Although MES16 is similar to MES17, a MeIAA hydrolase, two mes16 mutant lines (SALK_151578) and (SALK_139756) do not show altered sensitivity to MeIAA in root growth assays. MES16 transcripts appear to be more than 10-fold less abundant than those of MES17 in roots.O.I.C.G.H.G.
16.799.540.4At1g13640837925phosphatidylinositol 3- and 4-kinase family proteinF:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:unknown;C:cellular_component unknown;MPOFBO.I.C.G.H.G.
16.499.530.6At4g18740827608transcription termination factorF:transcription termination factor activity;P:transcription termination;C:unknown;MPOBVFO.I.C.G.H.G.
16.299.526.9At5g64110836532peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:membrane;PFOBO.I.C.G.H.G.
16.099.5226.8At1g80380844378phosphoribulokinase/uridine kinase-relatedencodes a glycerate kinase which catalyzes the last step of photorespiration C2 cycle.O.I.C.G.H.G.
16.099.5126.6At4g25700828675BETA-OHASE 1 (BETA-HYDROXYLASE 1)Converts beta-carotene to zeaxanthin via cryptoxanthin.O.I.C.G.H.G.
15.699.565.8At5g28770832990BZO2H3bZIP protein BZO2H3 mRNA, partial cdsO.I.C.G.H.G.
15.499.5158.7At3g61060825278AtPP2-A13 (Arabidopsis thaliana phloem protein 2-A13)F:carbohydrate binding;P:N-terminal protein myristoylation, response to wounding;C:unknown;PO.I.C.G.H.G.
15.399.4121.9At4g34030829549MCCB (3-METHYLCROTONYL-COA CARBOXYLASE)MCC-B is involved in leucine degradation in mitochondria. The active protein is a dimer of MCC-A and MCC-B. MCC-A is biotinylated whereas MCC-B is not.O.I.C.G.H.G.
15.299.4187.2At1g19530838540unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
14.999.4205.9At2g38210818400PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4)F:unknown;P:response to ethylene stimulus, response to stress;C:plasma membrane;BOAFPMO.I.C.G.H.G.
14.699.423.7At4g39070830062zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:response to chitin, regulation of transcription;C:intracellular;POMO.I.C.G.H.G.
14.699.416.4At4g12690826881unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.399.443.4At5g17290831594APG5 (AUTOPHAGY 5)Autophagy protein ATG5. Forms a conjugate with ATG12 with an essential role in plant nutrient recycling. Mutants missing ATG5 display early senescence and are hypersensitive to nitrogen or carbon starvation, accompanied by a more rapid loss of organellar and cytoplasmic proteins.O.I.C.G.H.G.
14.299.4132.5At1g06570837168PDS1 (PHYTOENE DESATURATION 1)Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants.O.I.C.G.H.G.
14.299.472.5At5g24120832477SIGE (SIGMA FACTOR E)Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.O.I.C.G.H.G.
14.199.442.3At5g23340832398-F:unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBVO.I.C.G.H.G.
14.099.473.5At4g25910828697NFU3Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU1 and 2 than to NFU4 and 5. Targeted to the chloroplast.O.I.C.G.H.G.
13.599.436.3At1g57770842152amine oxidase familyF:oxidoreductase activity;P:unknown;C:chloroplast;OBMPAFO.I.C.G.H.G.
13.499.465.7At3g27390822360unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
13.399.460.9At5g58650835979PSY1 (plant peptide containing sulfated tyrosine 1)Encodes PSY1, an18-aa tyrosine-sulfated glycopeptide that promotes cellular proliferation and expansion. PSY1 is widely expressed in various tissues, including shoot apical meristem, and is highly up-regulated by wounding. Perception of PSY1 depends on At1g72300, a leucine-rich repeat receptor kinase (LRR-RK).O.I.C.G.H.G.
13.299.457.5At1g23860838997RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21)Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing.O.I.C.G.H.G.
13.199.469.0At5g59440836063ZEU1 (ZEUS1)Encodes thymidylate kinase which exists in two isoforms in plants. The longer variant of 263 amino acids with a N-terminal extension that is required for localization to the mitochondrion. The second isoform of 224 residues is localized to the cytoplasm and nucleoplasm. Peak of expression occurs during G1/S phase transition.O.I.C.G.H.G.
13.099.471.7At4g28040828919nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;PBOAMO.I.C.G.H.G.
12.899.318.6At4g26150828721CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1)F:transcription factor activity;P:response to cytokinin stimulus;C:nucleus;FPOMO.I.C.G.H.G.
12.799.355.9At1g78290844164--O.I.C.G.H.G.
12.699.344.3At5g17300831595myb family transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;PMOFVBO.I.C.G.H.G.
12.599.3119.0At5g211708322435'-AMP-activated protein kinase beta-2 subunit, putativeF:AMP-activated protein kinase activity;P:N-terminal protein myristoylation;C:chloroplast;MFPOBO.I.C.G.H.G.
12.599.321.9At3g57190824886peptide chain release factor, putativeF:translation release factor activity, codon specific, translation release factor activity;P:translational termination;C:cytoplasm;BOMPFO.I.C.G.H.G.
12.399.3118.5At4g37760829932SQE3 (squalene epoxidase 3)F:squalene monooxygenase activity;P:response to jasmonic acid stimulus, sterol biosynthetic process, response to wounding;C:endomembrane system, integral to membrane;BOFMPAO.I.C.G.H.G.
12.299.344.2At4g31870829316ATGPX7 (glutathione peroxidase 7)Encodes glutathione peroxidase.O.I.C.G.H.G.
12.199.366.3At5g24460832517unknown proteinF:unknown;P:biological_process unknown;C:cell wall;PFOO.I.C.G.H.G.
12.199.350.0At5g14170831267CHC1CHC1 is predicted to encode a protein that belongs to the chromodomain remodeling complex. Two RNAi knock-down lines have a dwarf phenotype and reduced rates of Agrobacterium-mediated transformation. The low rate of root-mediated transformation rate may result from altered root morphology or reduced root growth rates.O.I.C.G.H.G.
12.099.332.5At4g34138829561UGT73B1 (UDP-glucosyl transferase 73B1)F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOFO.I.C.G.H.G.
12.099.329.3At5g49700835033DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:unknown;PMBFO.I.C.G.H.G.
11.999.3155.6At5g48485834904DIR1 (DEFECTIVE IN INDUCED RESISTANCE 1)encodes a putative apoplastic lipid transfer protein that is involved in systemic acquired resistance. Mutants in this gene exhibit wild-type local resistance to avirulent and virulent Pseudomonas syringae, but pathogenesis-related gene expression is abolished in uninoculated distant leaves and fail to develop SAR to virulent Pseudomonas or Peronospora parasitica.O.I.C.G.H.G.
11.999.355.0At2g36885818261unknown proteinF:molecular_function unknown;P:unknown;C:chloroplast;BOPO.I.C.G.H.G.
11.699.3146.8At1g61740842471unknown proteinF:unknown;P:unknown;C:endomembrane system, integral to membrane;BOPAO.I.C.G.H.G.
11.699.3111.4At5g18110831929NCBP (NOVEL CAP-BINDING PROTEIN)F:RNA binding, translation initiation factor activity;P:translational initiation;C:cytoplasm;MOFPO.I.C.G.H.G.
11.699.361.1At5g53050835385hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BOMPFAVO.I.C.G.H.G.
11.599.3241.9At3g47340823888ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.O.I.C.G.H.G.
11.599.355.6At1g55510841998BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT)branched-chain alpha-keto acid decarboxylase E1 betaO.I.C.G.H.G.
11.499.3221.9At3g57520824919AtSIP2 (Arabidopsis thaliana seed imbibition 2)F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:unknown;C:cellular_component unknown;PFBAOO.I.C.G.H.G.
11.499.372.1At1g55805842030BolA-like family proteinF:transcription regulator activity;P:biological_process unknown;C:chloroplast;BOMFPAO.I.C.G.H.G.
11.499.324.9At1g51360841560DABB1 (DIMERIC A/B BARREL DOMAINS-PROTEIN 1)Involved in defense against fungal pathogens and located in cytosol.O.I.C.G.H.G.
11.399.3109.1At5g24690832541-F:unknown;P:biological_process unknown;C:mitochondrion, chloroplast, plastid, chloroplast inner membrane, chloroplast envelope;POMBFVO.I.C.G.H.G.
11.199.221.2At3g26630822275pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POFMO.I.C.G.H.G.
11.099.2297.6At5g49360834996BXL1 (BETA-XYLOSIDASE 1)Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members.O.I.C.G.H.G.
11.099.2260.3At4g15610827238integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
11.099.2155.0At2g33340817897nucleotide binding / ubiquitin-protein ligaseF:ubiquitin-protein ligase activity, nucleotide binding;P:protein ubiquitination;C:cell wall, chloroplast, CUL4 RING ubiquitin ligase complex;MFOBPAO.I.C.G.H.G.
11.099.235.5At2g36000818173mitochondrial transcription termination factor-related / mTERF-relatedF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMO.I.C.G.H.G.
10.999.2130.1At5g51010835174rubredoxin family proteinF:electron carrier activity, metal ion binding;P:unknown;C:unknown;BPAOO.I.C.G.H.G.
10.899.2235.3At4g26530828759fructose-bisphosphate aldolase, putativeF:fructose-bisphosphate aldolase activity;P:glycolysis, metabolic process;C:chloroplast;OMBPFO.I.C.G.H.G.
10.899.234.0At5g04770830355CAT6 (CATIONIC AMINO ACID TRANSPORTER 6)Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs. Expressed in sink tissues. Induced during infestation of roots by the plant parasitic root-knot nematode, Meloidogyne incognita. Localized in the plasma membrane.O.I.C.G.H.G.
10.799.2113.0At1g11530837696ATCXXS1 (C-terminal cysteine residue is changed to a serine 1)Encodes a monocysteinic thioredoxin, thioredoxin in which the second cysteine of the redox site is replaced by a serine, with low disulfide reductase but efficient disulfide isomerase activity.O.I.C.G.H.G.
10.799.261.7At1g61900842486unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PO.I.C.G.H.G.
10.799.258.3At1g11360837678universal stress protein (USP) family proteinF:unknown;P:response to stress;C:cytosol, plasma membrane;PBMFAOO.I.C.G.H.G.
10.799.231.6At2g43400818941ETFQO (electron-transfer flavoprotein:ubiquinone oxidoreductase)Encodes a unique electron-transfer flavoprotein:ubiquinone oxidoreductase that is localized to the mitochondrion. Mutants are more sensitive to sugar starvation when plants are kept in the dark for long periods.O.I.C.G.H.G.
10.699.2277.0At3g15850820828FAD5 (FATTY ACID DESATURASE 5)Chloroplastic enzyme responsible for the synthesis of 16:1 fatty acids from galactolipids and sulpholipids. Uses ferredoxin as electron donor.O.I.C.G.H.G.
10.699.254.2At5g58090835921glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFBOO.I.C.G.H.G.



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