Microarray experiments to specifically-expressed genes

GSM ID GSM142726
Assay name CH001_ATH1_A005-Hampt-wsb_repeat
GSE experiment GSE6161: Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
174.5100.056.0At3g60270825198uclacyanin, putativeF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBVFMAO.I.C.G.H.G.
156.699.959.2At1g65680842879ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
115.199.984.0At4g08380826395proline-rich extensin-like family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFOBVAO.I.C.G.H.G.
108.699.9171.8At3g29410822602terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POO.I.C.G.H.G.
70.199.929.7At2g38600818442acid phosphatase class B family proteinF:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOO.I.C.G.H.G.
67.599.8358.2At1g26250839166proline-rich extensin, putativeF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVAO.I.C.G.H.G.
65.799.833.2At5g43360834354PHT3 (PHOSPHATE TRANSPORTER 3)phosphate transporterO.I.C.G.H.G.
60.999.824.3At2g31085817664CLE6 (CLAVATA3/ESR-RELATED 6)Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can replace CLV3 function in vivo.O.I.C.G.H.G.
52.299.820.2At2g34180817979CIPK13 (CBL-INTERACTING PROTEIN KINASE 13)Encodes CBL-interacting protein kinase 13 (CIPK13).O.I.C.G.H.G.
48.499.869.8At3g58810825050MTPA2 (METAL TOLERANCE PROTEIN A2)Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane.O.I.C.G.H.G.
42.999.867.6At3g01260821171aldose 1-epimerase/ carbohydrate binding / catalytic/ isomeraseF:carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVAO.I.C.G.H.G.
41.699.8161.8At5g19890832111peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:nucleus, cytoplasm;PFOBO.I.C.G.H.G.
38.199.843.2At5g14650831317polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.C.G.H.G.
38.099.829.4At1g24430839059transferase/ transferase, transferring acyl groups other than amino-acyl groupsF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PFO.I.C.G.H.G.
36.699.7175.8At5g48430834898aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PO.I.C.G.H.G.
34.999.7157.4At4g19690827713IRT1 (iron-regulated transporter 1)Fe(II) transport protein (IRT1)O.I.C.G.H.G.
34.799.726.2At1g64480842756CBL8 (CALCINEURIN B-LIKE PROTEIN 8)calcineurin B-like protein 8, member of plant-specific family of calcium sensor proteins containing 3 EF-hand motifsO.I.C.G.H.G.
33.799.751.3At5g59680836089leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
31.799.789.4At3g03670821193peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOBO.I.C.G.H.G.
31.199.745.9At4g31875829317unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
30.999.790.2At5g38930833885germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:cell wall;PFOO.I.C.G.H.G.
30.799.718.5At1g49030841326unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.C.G.H.G.
30.699.793.8At5g38020833781S-adenosyl-L-methionine:carboxyl methyltransferase family proteinencodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)O.I.C.G.H.G.
30.599.767.2At3g51330824296aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOBVO.I.C.G.H.G.
30.299.740.4At2g41810818780-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO.I.C.G.H.G.
30.199.7292.4At4g33720829514pathogenesis-related protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBO.I.C.G.H.G.
29.499.7140.0At4g08770826447peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:vacuole;POFO.I.C.G.H.G.
29.099.737.8At4g18510827583CLE2 (CLAVATA3/ESR-RELATED)CLE2, putative ligand, member of large gene family homologous to Clavata3O.I.C.G.H.G.
28.699.7132.1At4g11290826731peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBO.I.C.G.H.G.
28.699.720.5At4g10550826647subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.C.G.H.G.
28.399.738.0At4g30420829165nodulin MtN21 family proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;BOPAMO.I.C.G.H.G.
27.299.739.2At1g26240839165proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVAO.I.C.G.H.G.
26.499.742.0At5g10210830885-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
26.299.724.6At3g02850821052SKORmember of Stelar K+ outward rectifying channel (SKOR) family. Mediates the delivery of K+ from stelar cells to the xylem in the roots towards the shoot. mRNA accumulation is modulated by abscisic acid. K+ gating activity is modulated by external and internal K+.O.I.C.G.H.G.
26.199.7269.1At1g08090837327ATNRT2:1 (NITRATE TRANSPORTER 2:1)High-affinity nitrate transporter. Up-regulated by nitrate. Functions as a repressor of lateral root initiation independently of nitrate uptake.O.I.C.G.H.G.
25.499.638.3At4g08620826426SULTR1High affinity sulfate transporter. Contains STAS domain, essential for sulfur uptake function. Expressed in roots and guard cells. Up-regulated by sulfur deficiency. Down-regulated by cytokinin. Localized to the plasma membrane.O.I.C.G.H.G.
25.299.625.2At3g51350824298aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOBAVO.I.C.G.H.G.
24.999.650.4At5g03570831787ATIREG2 (IRON-REGULATED PROTEIN 2)Encodes a tonoplast localized nickel transport protein.O.I.C.G.H.G.
24.999.646.3At5g63590836478FLS3 (FLAVONOL SYNTHASE 3)F:flavonol synthase activity;P:response to light stimulus, response to sucrose stimulus, flavonoid biosynthetic process;C:cellular_component unknown;POBFMO.I.C.G.H.G.
24.699.6137.7At4g14630827113GLP9 (GERMIN-LIKE PROTEIN 9)germin-like protein with N-terminal signal sequence that may target it to the vacuole, plasma membrane and/or outside the cell.O.I.C.G.H.G.
21.799.6113.0At2g39530818538integral membrane protein, putativeF:molecular_function unknown;P:biological_process unknown;C:membrane;PO.I.C.G.H.G.
21.399.6267.1At1g49860841409ATGSTF14Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
21.199.639.5At3g49860824148ATARLA1B (ADP-ribosylation factor-like A1B)A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.O.I.C.G.H.G.
20.799.662.1At3g05950819765germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFBOO.I.C.G.H.G.
20.499.6317.2At2g38380818419peroxidase 22 (PER22) (P22) (PRXEA) / basic peroxidase EF:electron carrier activity, peroxidase activity, heme binding;P:response to salt stress;C:plant-type cell wall;PFOO.I.C.G.H.G.
20.199.6234.3At3g01190821314peroxidase 27 (PER27) (P27) (PRXR7)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMO.I.C.G.H.G.
20.099.616.9At3g47980823953integral membrane HPP family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast;BOFPO.I.C.G.H.G.
19.899.6189.3At1g05240839237peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOBO.I.C.G.H.G.
19.899.622.1At1g34670840371AtMYB93 (myb domain protein 93)Member of the R2R3 factor gene family.O.I.C.G.H.G.
19.799.616.5At4g03500827731ankyrin repeat family proteinF:protein binding;P:unknown;C:unknown;MOFPBVAO.I.C.G.H.G.
19.699.674.1At5g63660836486PDF2.5Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
19.099.553.6At1g33800840272unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBO.I.C.G.H.G.
18.899.519.6At5g24230832490-F:unknown;P:unknown;C:cellular_component unknown;PFMO.I.C.G.H.G.
18.399.5110.8At5g67400836876peroxidase 73 (PER73) (P73) (PRXR11)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
18.399.524.2At1g62280842525SLAH1 (SLAC1 HOMOLOGUE 1)Encodes a protein with ten predicted transmembrane helices. The SLAH1 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. Although it is not expressed in guard cells, it can complement a slac1-2 mutant suggesting that it performs a similar function. SLAH1:GFP localizes to the plasma membrane.O.I.C.G.H.G.
18.299.545.7At4g08780826448peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:vacuole;POFMO.I.C.G.H.G.
18.199.5223.5At5g50200835085WR3 (WOUND-RESPONSIVE 3)Wound-responsive gene 3 (WR3). Encodes a high-affinity nitrate transporter. Up-regulated by nitrate. Involved in jasmonic acid-independent wound signal transduction.O.I.C.G.H.G.
17.999.513.9At2g23960816929defense-related protein, putativeF:catalytic activity;P:defense response;C:cellular_component unknown;OBAFPMO.I.C.G.H.G.
17.499.513.7At5g14330831283unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
17.499.510.8At1g73270843661scpl6 (serine carboxypeptidase-like 6)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOO.I.C.G.H.G.
16.999.518.3At1g53640841800unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFOBVO.I.C.G.H.G.
16.799.5346.4At1g11580837701PMEPCRA (METHYLESTERASE PCR A)F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plasma membrane, plant-type cell wall;PBFMOO.I.C.G.H.G.
16.499.556.1At2g22510816784hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMBVFAO.I.C.G.H.G.
15.899.560.6At5g28630832966glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBAO.I.C.G.H.G.
15.799.5169.7At4g39675830122unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
15.599.5315.7At1g66270842944BGLU21F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:cellular response to phosphate starvation, response to salt stress;C:vacuole, membrane;BOPMFAO.I.C.G.H.G.
15.599.5119.8At2g24980817037proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVAO.I.C.G.H.G.
15.499.59.3At4g13440826976calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
15.299.446.7At1g11540837697unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBAPO.I.C.G.H.G.
15.199.4131.9At4g26010828707peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
15.199.489.0At2g13820815865protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to plasma membrane, plasma membrane;PFO.I.C.G.H.G.
15.199.462.3At3g06390819813integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
15.099.4110.9At5g10580830923unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOO.I.C.G.H.G.
15.099.48.6At2g38490818431CIPK22 (CBL-INTERACTING PROTEIN KINASE 22)member of AtCIPKsO.I.C.G.H.G.
14.999.495.4At4g36430829795peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to other organism;C:cell wall;PFOBMO.I.C.G.H.G.
14.899.420.8At2g28710817420zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMOO.I.C.G.H.G.
14.799.435.9At1g78090844144ATTPPB (TREHALOSE-6-PHOSPHATE PHOSPHATASE)homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatasesO.I.C.G.H.G.
14.799.412.2At5g19700832090MATE efflux protein-relatedF:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
14.599.427.3At4g25250828628invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PMOO.I.C.G.H.G.
14.599.424.1At1g17090838279unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
14.599.414.1At5g51310835205gibberellin 20-oxidase-relatedF:oxidoreductase activity, iron ion binding;P:gibberellin biosynthetic process;C:unknown;POBFMO.I.C.G.H.G.
14.399.4189.6At3g13610820564oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, dioxygenase activity;P:coumarin biosynthetic process, response to cyclopentenone, hydrogen peroxide-mediated programmed cell death, secondary metabolic process;C:cellular_component unknown;POBFMO.I.C.G.H.G.
14.299.413.9At3g49760824138AtbZIP5 (Arabidopsis thaliana basic leucine-zipper 5)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFO.I.C.G.H.G.
14.299.412.2At1g50050841429pathogenesis-related protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFBOO.I.C.G.H.G.
14.199.441.6At1g08320837353bZIP family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFO.I.C.G.H.G.
14.099.4303.5At4g12550826868AIR1isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus.O.I.C.G.H.G.
13.999.444.6At3g28550822485proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPFBOVAO.I.C.G.H.G.
13.799.418.9At5g14150831265unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PBOO.I.C.G.H.G.
13.699.493.7At1g23720838982proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MBFOPVAO.I.C.G.H.G.
13.599.441.0At1g74760--O.I.C.G.H.G.
13.599.416.9At4g35030829655protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVAO.I.C.G.H.G.
13.499.438.5At1g30110839890ATNUDX25 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 25)F:bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity;P:diadenosine tetraphosphate catabolic process;C:cellular_component unknown;BOPMAO.I.C.G.H.G.
13.499.47.8At5g19040832023IPT5Encodes cytokinin synthase.O.I.C.G.H.G.
13.399.429.3At2g39040818490peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
13.299.467.6At4g19030827641NLM1an aquaporin whose expression level is reduced by ABA, NaCl, dark, and dessication. is expressed at relatively low levels under normal conditions. Also functions in arsenite transport and tolerance.O.I.C.G.H.G.
13.299.49.8At3g46710823824disease resistance protein (CC-NBS-LRR class), putativeF:ATP binding;P:defense response, apoptosis;C:cellular_component unknown;PMBOFVAO.I.C.G.H.G.
13.199.467.7At2g25810817123TIP4F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAO.I.C.G.H.G.
13.199.421.7At1g49960841419xanthine/uracil permease family proteinF:transmembrane transporter activity;P:transport;C:membrane;BOMPFAVO.I.C.G.H.G.
13.099.445.6At1g60680842362aldo/keto reductase family proteinF:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:unknown;BOMFPAO.I.C.G.H.G.
13.099.431.0At5g40590834057DC1 domain-containing proteinF:unknown;P:unknown;C:cellular_component unknown;POFO.I.C.G.H.G.



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